Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02220 and RR42_RS02225 are separated by 27 nucleotides RR42_RS02225 and RR42_RS02230 are separated by 67 nucleotides
RR42_RS02220: RR42_RS02220 - LysR family transcriptional regulator, at 491,812 to 492,753
_RS02220
RR42_RS02225: RR42_RS02225 - ABC transporter substrate-binding protein, at 492,781 to 493,764
_RS02225
RR42_RS02230: RR42_RS02230 - sulfolactate dehydrogenase, at 493,832 to 494,836
_RS02230
Position (kb) 492
493
494 Strain fitness (log2 ratio) -1
0
1
2 at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.291 kb on - strand, within RR42_RS02220 at 492.291 kb on - strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.293 kb on - strand, within RR42_RS02220 at 492.293 kb on - strand, within RR42_RS02220 at 492.293 kb on - strand, within RR42_RS02220 at 492.651 kb on + strand, within RR42_RS02220 at 492.652 kb on - strand, within RR42_RS02220 at 492.652 kb on - strand, within RR42_RS02220 at 492.670 kb on + strand at 492.845 kb on + strand at 493.416 kb on + strand, within RR42_RS02225 at 493.524 kb on + strand, within RR42_RS02225 at 493.525 kb on - strand, within RR42_RS02225 at 493.646 kb on + strand, within RR42_RS02225 at 493.646 kb on + strand, within RR42_RS02225 at 493.739 kb on - strand at 493.845 kb on - strand at 493.992 kb on + strand, within RR42_RS02230 at 493.993 kb on - strand, within RR42_RS02230 at 493.993 kb on - strand, within RR42_RS02230 at 494.048 kb on - strand, within RR42_RS02230 at 494.627 kb on + strand, within RR42_RS02230 at 494.679 kb on + strand, within RR42_RS02230 at 494.679 kb on + strand, within RR42_RS02230 at 494.680 kb on - strand, within RR42_RS02230
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 492,290 + RR42_RS02220 0.51 +0.2 492,290 + RR42_RS02220 0.51 +2.5 492,290 + RR42_RS02220 0.51 -0.2 492,290 + RR42_RS02220 0.51 +0.1 492,290 + RR42_RS02220 0.51 +0.8 492,291 - RR42_RS02220 0.51 -0.4 492,291 - RR42_RS02220 0.51 +0.8 492,292 + RR42_RS02220 0.51 +0.4 492,292 + RR42_RS02220 0.51 -0.0 492,292 + RR42_RS02220 0.51 +2.1 492,292 + RR42_RS02220 0.51 +0.1 492,293 - RR42_RS02220 0.51 +1.0 492,293 - RR42_RS02220 0.51 -0.3 492,293 - RR42_RS02220 0.51 +0.5 492,651 + RR42_RS02220 0.89 +0.1 492,652 - RR42_RS02220 0.89 +0.0 492,652 - RR42_RS02220 0.89 -0.3 492,670 + -0.2 492,845 + +0.5 493,416 + RR42_RS02225 0.65 -0.1 493,524 + RR42_RS02225 0.76 -0.1 493,525 - RR42_RS02225 0.76 -0.5 493,646 + RR42_RS02225 0.88 -0.4 493,646 + RR42_RS02225 0.88 -1.3 493,739 - -0.4 493,845 - +0.6 493,992 + RR42_RS02230 0.16 +0.5 493,993 - RR42_RS02230 0.16 +0.7 493,993 - RR42_RS02230 0.16 -0.4 494,048 - RR42_RS02230 0.21 +1.7 494,627 + RR42_RS02230 0.79 +0.6 494,679 + RR42_RS02230 0.84 +0.6 494,679 + RR42_RS02230 0.84 +0.3 494,680 - RR42_RS02230 0.84 +1.5
Or see this region's nucleotide sequence