Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00715 and RR42_RS00720 are separated by 219 nucleotides RR42_RS00720 and RR42_RS00725 are separated by 69 nucleotides
RR42_RS00715: RR42_RS00715 - ferritin, at 180,744 to 181,607
_RS00715
RR42_RS00720: RR42_RS00720 - patatin, at 181,827 to 183,068
_RS00720
RR42_RS00725: RR42_RS00725 - hypothetical protein, at 183,138 to 184,046
_RS00725
Position (kb) 181
182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 180.858 kb on - strand, within RR42_RS00715 at 180.858 kb on - strand, within RR42_RS00715 at 181.103 kb on - strand, within RR42_RS00715 at 181.166 kb on - strand, within RR42_RS00715 at 181.611 kb on - strand at 181.721 kb on - strand at 181.773 kb on - strand at 181.773 kb on - strand at 181.773 kb on - strand at 181.773 kb on - strand at 181.824 kb on - strand at 181.866 kb on - strand at 181.866 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 181.925 kb on - strand at 182.018 kb on - strand, within RR42_RS00720 at 182.018 kb on - strand, within RR42_RS00720 at 182.584 kb on + strand, within RR42_RS00720 at 182.585 kb on - strand, within RR42_RS00720 at 182.585 kb on - strand, within RR42_RS00720 at 182.610 kb on - strand, within RR42_RS00720 at 182.610 kb on - strand, within RR42_RS00720 at 182.612 kb on - strand, within RR42_RS00720 at 182.612 kb on - strand, within RR42_RS00720 at 182.612 kb on - strand, within RR42_RS00720 at 183.006 kb on + strand at 183.007 kb on - strand at 183.159 kb on - strand at 183.450 kb on - strand, within RR42_RS00725 at 183.657 kb on - strand, within RR42_RS00725 at 183.657 kb on - strand, within RR42_RS00725 at 183.706 kb on + strand, within RR42_RS00725 at 183.706 kb on + strand, within RR42_RS00725 at 183.707 kb on - strand, within RR42_RS00725
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 180,858 - RR42_RS00715 0.13 +0.6 180,858 - RR42_RS00715 0.13 -1.9 181,103 - RR42_RS00715 0.42 -1.4 181,166 - RR42_RS00715 0.49 -0.8 181,611 - -1.5 181,721 - -0.1 181,773 - +0.1 181,773 - -0.2 181,773 - -0.4 181,773 - +0.7 181,824 - +0.6 181,866 - -1.1 181,866 - +0.9 181,925 - -2.1 181,925 - +0.3 181,925 - +0.7 181,925 - -0.7 181,925 - +1.0 181,925 - -0.6 181,925 - +1.0 182,018 - RR42_RS00720 0.15 -0.1 182,018 - RR42_RS00720 0.15 -0.1 182,584 + RR42_RS00720 0.61 -0.4 182,585 - RR42_RS00720 0.61 +0.2 182,585 - RR42_RS00720 0.61 -1.7 182,610 - RR42_RS00720 0.63 -1.7 182,610 - RR42_RS00720 0.63 +0.3 182,612 - RR42_RS00720 0.63 -0.4 182,612 - RR42_RS00720 0.63 +0.4 182,612 - RR42_RS00720 0.63 +0.5 183,006 + -2.9 183,007 - +0.2 183,159 - -1.6 183,450 - RR42_RS00725 0.34 +0.2 183,657 - RR42_RS00725 0.57 -0.7 183,657 - RR42_RS00725 0.57 +0.5 183,706 + RR42_RS00725 0.62 +0.7 183,706 + RR42_RS00725 0.62 -0.0 183,707 - RR42_RS00725 0.63 -1.0
Or see this region's nucleotide sequence