Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00330 and RR42_RS00335 are separated by 95 nucleotides RR42_RS00335 and RR42_RS00340 are separated by 21 nucleotides RR42_RS00340 and RR42_RS00345 are separated by 152 nucleotides
RR42_RS00330: RR42_RS00330 - glutathione peroxidase, at 92,479 to 93,117
_RS00330
RR42_RS00335: RR42_RS00335 - MBL fold metallo-hydrolase, at 93,213 to 94,004
_RS00335
RR42_RS00340: RR42_RS00340 - glutathione S-transferase, at 94,026 to 94,652
_RS00340
RR42_RS00345: RR42_RS00345 - LysR family transcriptional regulator, at 94,805 to 95,716
_RS00345
Position (kb) 94
95 Strain fitness (log2 ratio) -2
-1
0
1
2 at 93.043 kb on + strand, within RR42_RS00330 at 93.043 kb on + strand, within RR42_RS00330 at 93.043 kb on + strand, within RR42_RS00330 at 93.043 kb on + strand, within RR42_RS00330 at 93.044 kb on - strand, within RR42_RS00330 at 93.044 kb on - strand, within RR42_RS00330 at 93.044 kb on - strand, within RR42_RS00330 at 93.046 kb on - strand, within RR42_RS00330 at 93.046 kb on - strand, within RR42_RS00330 at 93.116 kb on - strand at 93.183 kb on + strand at 93.184 kb on - strand at 93.226 kb on + strand at 93.226 kb on + strand at 93.228 kb on + strand at 93.229 kb on - strand at 93.229 kb on - strand at 93.366 kb on + strand, within RR42_RS00335 at 93.367 kb on - strand, within RR42_RS00335 at 93.367 kb on - strand, within RR42_RS00335 at 93.378 kb on + strand, within RR42_RS00335 at 93.378 kb on + strand, within RR42_RS00335 at 93.378 kb on + strand, within RR42_RS00335 at 93.378 kb on + strand, within RR42_RS00335 at 93.379 kb on - strand, within RR42_RS00335 at 93.379 kb on - strand, within RR42_RS00335 at 93.379 kb on - strand, within RR42_RS00335 at 93.396 kb on + strand, within RR42_RS00335 at 93.420 kb on + strand, within RR42_RS00335 at 93.420 kb on + strand, within RR42_RS00335 at 93.420 kb on + strand, within RR42_RS00335 at 93.420 kb on + strand, within RR42_RS00335 at 93.420 kb on + strand, within RR42_RS00335 at 93.421 kb on - strand, within RR42_RS00335 at 93.421 kb on - strand, within RR42_RS00335 at 93.421 kb on - strand, within RR42_RS00335 at 93.421 kb on - strand, within RR42_RS00335 at 93.421 kb on - strand, within RR42_RS00335 at 93.450 kb on - strand, within RR42_RS00335 at 93.569 kb on + strand, within RR42_RS00335 at 93.570 kb on - strand, within RR42_RS00335 at 93.666 kb on + strand, within RR42_RS00335 at 93.666 kb on + strand, within RR42_RS00335 at 93.666 kb on + strand, within RR42_RS00335 at 93.666 kb on + strand, within RR42_RS00335 at 93.667 kb on - strand, within RR42_RS00335 at 93.795 kb on + strand, within RR42_RS00335 at 93.795 kb on + strand, within RR42_RS00335 at 93.796 kb on - strand, within RR42_RS00335 at 93.796 kb on - strand, within RR42_RS00335 at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.970 kb on - strand at 93.970 kb on - strand at 93.970 kb on - strand at 94.114 kb on + strand, within RR42_RS00340 at 94.115 kb on - strand, within RR42_RS00340 at 94.168 kb on + strand, within RR42_RS00340 at 94.168 kb on + strand, within RR42_RS00340 at 94.204 kb on + strand, within RR42_RS00340 at 94.204 kb on + strand, within RR42_RS00340 at 94.204 kb on + strand, within RR42_RS00340 at 94.205 kb on - strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.427 kb on - strand, within RR42_RS00340 at 94.427 kb on - strand, within RR42_RS00340 at 94.504 kb on - strand, within RR42_RS00340 at 94.510 kb on + strand, within RR42_RS00340 at 94.510 kb on + strand, within RR42_RS00340 at 94.510 kb on + strand, within RR42_RS00340 at 94.511 kb on - strand, within RR42_RS00340 at 94.511 kb on - strand, within RR42_RS00340 at 94.639 kb on + strand at 94.639 kb on + strand at 94.639 kb on + strand at 94.640 kb on - strand at 94.642 kb on + strand at 94.643 kb on - strand at 94.735 kb on - strand at 94.812 kb on + strand at 94.813 kb on - strand at 94.818 kb on - strand at 94.985 kb on + strand, within RR42_RS00345 at 94.986 kb on - strand, within RR42_RS00345
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 93,043 + RR42_RS00330 0.88 +0.3 93,043 + RR42_RS00330 0.88 -0.3 93,043 + RR42_RS00330 0.88 +0.3 93,043 + RR42_RS00330 0.88 +1.3 93,044 - RR42_RS00330 0.88 -0.2 93,044 - RR42_RS00330 0.88 -2.2 93,044 - RR42_RS00330 0.88 -1.3 93,046 - RR42_RS00330 0.89 +0.1 93,046 - RR42_RS00330 0.89 +0.3 93,116 - +0.3 93,183 + -0.2 93,184 - -0.7 93,226 + -0.4 93,226 + -1.0 93,228 + -0.2 93,229 - -0.5 93,229 - -0.5 93,366 + RR42_RS00335 0.19 -0.4 93,367 - RR42_RS00335 0.19 -0.4 93,367 - RR42_RS00335 0.19 +0.3 93,378 + RR42_RS00335 0.21 -0.2 93,378 + RR42_RS00335 0.21 +0.2 93,378 + RR42_RS00335 0.21 +0.4 93,378 + RR42_RS00335 0.21 +0.3 93,379 - RR42_RS00335 0.21 -0.4 93,379 - RR42_RS00335 0.21 -0.7 93,379 - RR42_RS00335 0.21 -2.3 93,396 + RR42_RS00335 0.23 -0.5 93,420 + RR42_RS00335 0.26 +0.3 93,420 + RR42_RS00335 0.26 -0.1 93,420 + RR42_RS00335 0.26 +1.2 93,420 + RR42_RS00335 0.26 -1.8 93,420 + RR42_RS00335 0.26 -0.2 93,421 - RR42_RS00335 0.26 -0.2 93,421 - RR42_RS00335 0.26 +0.0 93,421 - RR42_RS00335 0.26 -0.5 93,421 - RR42_RS00335 0.26 +0.4 93,421 - RR42_RS00335 0.26 +1.0 93,450 - RR42_RS00335 0.30 -0.4 93,569 + RR42_RS00335 0.45 -0.0 93,570 - RR42_RS00335 0.45 +0.6 93,666 + RR42_RS00335 0.57 +0.8 93,666 + RR42_RS00335 0.57 -0.8 93,666 + RR42_RS00335 0.57 +0.2 93,666 + RR42_RS00335 0.57 +0.3 93,667 - RR42_RS00335 0.57 +0.4 93,795 + RR42_RS00335 0.73 +2.6 93,795 + RR42_RS00335 0.73 +0.6 93,796 - RR42_RS00335 0.74 -0.2 93,796 - RR42_RS00335 0.74 -0.9 93,969 + -0.8 93,969 + -0.2 93,969 + -0.3 93,969 + -0.2 93,969 + -0.1 93,969 + -0.4 93,969 + -0.2 93,970 - +0.1 93,970 - +0.1 93,970 - -0.6 94,114 + RR42_RS00340 0.14 +0.2 94,115 - RR42_RS00340 0.14 +0.2 94,168 + RR42_RS00340 0.23 +0.4 94,168 + RR42_RS00340 0.23 -0.4 94,204 + RR42_RS00340 0.28 -0.5 94,204 + RR42_RS00340 0.28 +0.0 94,204 + RR42_RS00340 0.28 -0.9 94,205 - RR42_RS00340 0.29 +0.8 94,426 + RR42_RS00340 0.64 +0.1 94,426 + RR42_RS00340 0.64 -1.1 94,426 + RR42_RS00340 0.64 +0.7 94,426 + RR42_RS00340 0.64 -0.3 94,426 + RR42_RS00340 0.64 +0.2 94,427 - RR42_RS00340 0.64 +0.2 94,427 - RR42_RS00340 0.64 -0.7 94,504 - RR42_RS00340 0.76 +0.2 94,510 + RR42_RS00340 0.77 -0.5 94,510 + RR42_RS00340 0.77 +1.1 94,510 + RR42_RS00340 0.77 -0.3 94,511 - RR42_RS00340 0.77 -0.1 94,511 - RR42_RS00340 0.77 +0.2 94,639 + +0.6 94,639 + -0.4 94,639 + +0.8 94,640 - +0.1 94,642 + -0.6 94,643 - +0.2 94,735 - -0.8 94,812 + +0.2 94,813 - -0.4 94,818 - +0.2 94,985 + RR42_RS00345 0.20 -0.4 94,986 - RR42_RS00345 0.20 +0.2
Or see this region's nucleotide sequence