Strain Fitness in Pantoea sp. MT58 around IAI47_18375

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,909,508	+		IAI47_18365	0.72	+1.8
3,909,509	-		IAI47_18365	0.72	-0.2
3,909,509	-		IAI47_18365	0.72	-0.9
3,909,529	+		IAI47_18365	0.74	+1.1
3,909,529	+		IAI47_18365	0.74	+3.7
3,909,529	+		IAI47_18365	0.74	+0.7
3,909,529	+		IAI47_18365	0.74	+2.3
3,909,530	-		IAI47_18365	0.74	+1.4
3,909,530	-		IAI47_18365	0.74	-1.6
3,909,530	-		IAI47_18365	0.74	-0.1
3,909,531	+		IAI47_18365	0.74	+0.4
3,909,531	+		IAI47_18365	0.74	-0.7
3,909,531	+		IAI47_18365	0.74	-1.0
3,909,531	+		IAI47_18365	0.74	+1.0
3,909,531	+		IAI47_18365	0.74	-1.5
3,909,531	+		IAI47_18365	0.74	+0.9
3,909,532	-		IAI47_18365	0.74	-0.8
3,909,532	-		IAI47_18365	0.74	+0.3
3,909,532	-		IAI47_18365	0.74	-0.4
3,909,532	-		IAI47_18365	0.74	+4.0
3,909,532	-		IAI47_18365	0.74	-0.2
3,909,551	-		IAI47_18365	0.76	+1.1
3,909,566	-		IAI47_18365	0.78	+4.0
3,909,566	-		IAI47_18365	0.78	+2.1
3,909,567	+		IAI47_18365	0.78	-1.0
3,909,567	+		IAI47_18365	0.78	+0.3
3,909,567	+		IAI47_18365	0.78	+0.2
3,909,567	+		IAI47_18365	0.78	+0.0
3,909,567	+		IAI47_18365	0.78	+0.5
3,909,567	+		IAI47_18365	0.78	-2.7
3,909,567	+		IAI47_18365	0.78	+0.8
3,909,568	-		IAI47_18365	0.78	-2.5
3,909,568	-		IAI47_18365	0.78	+0.6
3,909,568	-		IAI47_18365	0.78	-0.6
3,909,568	-		IAI47_18365	0.78	-0.9
3,909,568	-		IAI47_18365	0.78	+1.5
3,909,568	-		IAI47_18365	0.78	+2.7
3,909,568	-		IAI47_18365	0.78	+1.8
3,909,573	+		IAI47_18365	0.79	-0.6
3,909,573	+		IAI47_18365	0.79	-0.6
3,909,573	+		IAI47_18365	0.79	+1.0
3,909,573	+		IAI47_18365	0.79	-0.1
3,909,573	+		IAI47_18365	0.79	-0.5
3,909,573	+		IAI47_18365	0.79	+0.4
3,909,573	+		IAI47_18365	0.79	-0.1
3,909,573	+		IAI47_18365	0.79	+0.5
3,909,573	+		IAI47_18365	0.79	-0.6
3,909,574	-		IAI47_18365	0.79	+0.8
3,909,574	-		IAI47_18365	0.79	+0.3
3,909,582	+		IAI47_18365	0.80	+1.7
3,909,582	+		IAI47_18365	0.80	+0.6
3,909,583	-		IAI47_18365	0.80	+0.8
3,909,583	-		IAI47_18365	0.80	-1.2
3,909,583	-		IAI47_18365	0.80	-0.5
3,909,583	-		IAI47_18365	0.80	-0.1
3,909,583	-		IAI47_18365	0.80	-0.7
3,909,583	-		IAI47_18365	0.80	-1.7
3,909,583	-		IAI47_18365	0.80	-0.5
3,909,583	-		IAI47_18365	0.80	+2.2
3,909,595	-		IAI47_18365	0.81	+0.4
3,909,595	-		IAI47_18365	0.81	+0.7
3,909,600	+		IAI47_18365	0.82	+1.0
3,909,601	-		IAI47_18365	0.82	+0.9
3,909,601	-		IAI47_18365	0.82	+1.3
3,909,638	-		IAI47_18365	0.86	-0.5
3,909,638	-		IAI47_18365	0.86	-0.7
3,909,638	-		IAI47_18365	0.86	-0.9
3,909,643	+		IAI47_18365	0.87	+0.3
3,909,643	+		IAI47_18365	0.87	+0.7
3,909,643	+		IAI47_18365	0.87	+1.7
3,909,643	+		IAI47_18365	0.87	+1.0
3,909,644	-		IAI47_18365	0.87	+0.8
3,909,644	-		IAI47_18365	0.87	-1.2
3,909,644	-		IAI47_18365	0.87	+4.9
3,909,644	-		IAI47_18365	0.87	+0.8
3,909,644	-		IAI47_18365	0.87	-1.0
3,909,682	+				+1.6
3,909,683	-				+0.7
3,909,719	+				+0.4
3,909,719	+				-0.7
3,909,719	+				+0.0
3,909,720	-				-1.0
3,909,751	+				+1.0
3,909,751	+				+0.3
3,909,751	+				+0.3
3,909,752	-				+3.3
3,909,752	-				+0.1
3,909,752	-				-1.7
3,909,752	-				+1.4
3,909,752	-				+2.3
3,909,752	-				-0.7
3,909,757	+				+1.0
3,909,757	+				-0.2
3,909,757	+				+0.7
3,909,757	+				+0.1
3,909,757	+				-0.6
3,909,758	-				+1.6
3,909,758	-				-0.6
3,909,758	-				-0.2
3,909,782	+				+2.2
3,909,783	-				-0.5
3,909,783	-				+0.3
3,909,791	-				-2.6
3,909,807	+				-0.5
3,909,807	+				+1.2
3,909,808	-				-0.3
3,909,824	+				+2.2
3,909,824	+				+0.7
3,909,824	+				-1.7
3,909,825	-				+2.0
3,909,825	-				+0.7
3,909,825	-				-0.5
3,909,825	-				-1.0
3,909,862	-				-1.2
3,909,889	+				+0.4
3,909,889	+				-2.4
3,909,889	+				-0.2
3,909,889	+				-1.0
3,909,890	-				+0.8
3,909,890	-				-1.9
3,909,890	-				-1.7
3,909,890	-				-0.7
3,909,890	-				+1.5
3,909,890	-				+0.4
3,909,890	-				-0.0
3,909,890	-				-0.5
3,909,890	-				-0.3
3,909,890	-				+0.5
3,909,894	+				-1.7
3,909,894	+				+2.2
3,909,894	+				-1.2
3,909,894	+				-1.9
3,909,894	+				-0.4
3,909,894	+				-0.7
3,909,895	-				-0.2
3,909,895	-				+1.3
3,909,987	+				+0.9
3,909,987	+				+0.6
3,909,987	+				-0.1
3,909,987	+				+0.4
3,909,987	+				-0.6
3,909,988	-				-1.2
3,910,013	-		IAI47_18370	0.13	+1.5
3,910,026	+		IAI47_18370	0.16	+0.3
3,910,069	+		IAI47_18370	0.25	+1.0
3,910,069	+		IAI47_18370	0.25	-0.4
3,910,069	+		IAI47_18370	0.25	+2.3
3,910,069	+		IAI47_18370	0.25	-2.4
3,910,069	+		IAI47_18370	0.25	-2.2
3,910,070	-		IAI47_18370	0.25	-2.2
3,910,106	+		IAI47_18370	0.33	+1.2
3,910,106	+		IAI47_18370	0.33	+1.4
3,910,107	-		IAI47_18370	0.33	-0.2
3,910,107	-		IAI47_18370	0.33	-1.6
3,910,107	-		IAI47_18370	0.33	-2.0
3,910,107	-		IAI47_18370	0.33	-2.6
3,910,110	+		IAI47_18370	0.34	-1.2
3,910,110	+		IAI47_18370	0.34	-0.0
3,910,111	-		IAI47_18370	0.34	-1.6
3,910,154	+		IAI47_18370	0.43	+1.4
3,910,155	-		IAI47_18370	0.43	-2.8
3,910,188	+		IAI47_18370	0.50	-1.4
3,910,188	+		IAI47_18370	0.50	-0.7
3,910,188	+		IAI47_18370	0.50	+1.3
3,910,188	+		IAI47_18370	0.50	+1.2
3,910,188	+		IAI47_18370	0.50	-0.1
3,910,188	+		IAI47_18370	0.50	+0.4
3,910,188	+		IAI47_18370	0.50	+1.9
3,910,189	-		IAI47_18370	0.50	-0.1
3,910,189	-		IAI47_18370	0.50	-2.2
3,910,189	-		IAI47_18370	0.50	+0.3
3,910,263	+		IAI47_18370	0.66	+1.3
3,910,263	+		IAI47_18370	0.66	-1.7
3,910,263	+		IAI47_18370	0.66	-0.2
3,910,264	-		IAI47_18370	0.66	-1.6
3,910,264	-		IAI47_18370	0.66	+2.5
3,910,264	-		IAI47_18370	0.66	+0.9
3,910,264	-		IAI47_18370	0.66	+1.4
3,910,264	-		IAI47_18370	0.66	+0.6
3,910,264	-		IAI47_18370	0.66	-2.1
3,910,264	-		IAI47_18370	0.66	-1.2
3,910,276	+		IAI47_18370	0.69	+0.6
3,910,276	+		IAI47_18370	0.69	+0.6
3,910,277	-		IAI47_18370	0.69	-0.2
3,910,280	+		IAI47_18370	0.70	-0.8
3,910,280	+		IAI47_18370	0.70	-0.5
3,910,280	+				+0.8
3,910,280	+		IAI47_18370	0.70	+0.3
3,910,280	+		IAI47_18370	0.70	-0.2
3,910,281	-		IAI47_18370	0.70	-0.6
3,910,281	-		IAI47_18370	0.70	+0.4
3,910,281	-		IAI47_18370	0.70	-0.2
3,910,281	-		IAI47_18370	0.70	-0.2
3,910,384	+				-1.5
3,910,385	-				+0.3
3,910,392	+				+0.4
3,910,408	+				-0.8
3,910,408	+				-0.3
3,910,408	+				+2.1
3,910,408	+				-0.0
3,910,408	+				+3.1
3,910,408	+				-0.6
3,910,408	+				+1.1
3,910,408	+				-0.6
3,910,408	+				+0.3
3,910,408	+				+0.3
3,910,408	+				+0.5
3,910,408	+				-0.4
3,910,408	+				-1.0
3,910,409	-				+0.1
3,910,409	-				+0.8
3,910,409	-				+1.5
3,910,409	-				+1.8
3,910,409	-				-1.9
3,910,409	-				+0.7
3,910,409	-				-0.4
3,910,409	-				+2.6
3,910,409	-				-0.9
3,910,409	-				+0.4
3,910,409	-				-0.7
3,910,409	-				+1.0
3,910,409	-				-1.2
3,910,409	-				-1.5
3,910,409	-				+0.6
3,910,409	-				-0.2
3,910,409	-				-0.8
3,910,409	-				-2.5
3,910,409	-				-1.4
3,910,413	+				+1.7
3,910,414	-				+0.8
3,910,414	-				+1.3
3,910,445	+				-3.2
3,910,445	+				+0.3
3,910,445	+				-2.4
3,910,445	+				-0.2
3,910,451	+				+1.6
3,910,494	+				-0.2
3,910,494	+				+0.6
3,910,494	+				-0.6
3,910,494	+				-1.8
3,910,495	-				+0.7
3,910,495	-				-2.1
3,910,495	-				-0.6
3,910,499	+				-1.2
3,910,499	+				-0.5
3,910,499	+				-0.7
3,910,499	+				+0.1
3,910,500	-				+0.8
3,910,500	-				+1.1
3,910,521	+				-0.2
3,910,522	-				-0.9
3,910,592	+		IAI47_18375	0.16	+0.4
3,910,592	+		IAI47_18375	0.16	+0.4
3,910,607	+		IAI47_18375	0.18	-0.4
3,910,608	-		IAI47_18375	0.18	+1.4
3,910,633	+		IAI47_18375	0.21	+0.1
3,910,633	+		IAI47_18375	0.21	-0.0
3,910,634	-		IAI47_18375	0.21	+0.8
3,910,634	-		IAI47_18375	0.21	+1.3
3,910,634	-		IAI47_18375	0.21	-0.3
3,910,634	-		IAI47_18375	0.21	-0.1
3,910,642	+		IAI47_18375	0.22	+0.3
3,910,643	-		IAI47_18375	0.22	-1.0
3,910,643	-		IAI47_18375	0.22	+0.5
3,910,643	-		IAI47_18375	0.22	+0.7
3,910,643	-		IAI47_18375	0.22	-1.6
3,910,739	+		IAI47_18375	0.32	-0.3
3,910,739	+		IAI47_18375	0.32	+1.0
3,910,739	+		IAI47_18375	0.32	+8.1
3,910,739	+		IAI47_18375	0.32	+0.9
3,910,739	+		IAI47_18375	0.32	-0.5
3,910,739	+		IAI47_18375	0.32	+1.7
3,910,739	+		IAI47_18375	0.32	+2.0
3,910,739	+		IAI47_18375	0.32	+0.8
3,910,739	+		IAI47_18375	0.32	+2.9
3,910,739	+		IAI47_18375	0.32	+1.0
3,910,739	+		IAI47_18375	0.32	-1.6
3,910,740	-		IAI47_18375	0.32	+0.8
3,910,740	-		IAI47_18375	0.32	-3.6
3,910,740	-		IAI47_18375	0.32	+1.2
3,910,740	-		IAI47_18375	0.32	+0.9
3,910,740	-		IAI47_18375	0.32	+0.2
3,910,740	-		IAI47_18375	0.32	-0.4
3,910,740	-		IAI47_18375	0.32	+4.0
3,910,740	-		IAI47_18375	0.32	-0.4
3,910,740	-		IAI47_18375	0.32	+2.6
3,910,762	-		IAI47_18375	0.35	+0.3
3,910,766	+		IAI47_18375	0.35	-0.1
3,910,766	+		IAI47_18375	0.35	+1.5
3,910,766	+				+1.8
3,910,767	-		IAI47_18375	0.35	+7.6
3,910,767	-		IAI47_18375	0.35	+1.1
3,910,767	-		IAI47_18375	0.35	+2.4
3,910,767	-		IAI47_18375	0.35	+1.7
3,910,767	-		IAI47_18375	0.35	+1.6
3,910,769	+		IAI47_18375	0.36	-1.3
3,910,769	+		IAI47_18375	0.36	+2.3
3,910,782	-		IAI47_18375	0.37	+3.6
3,910,901	+		IAI47_18375	0.50	-0.0
3,910,901	+		IAI47_18375	0.50	-0.2
3,910,935	+		IAI47_18375	0.54	+1.3
3,910,935	+		IAI47_18375	0.54	-0.8
3,910,936	-		IAI47_18375	0.54	-0.7
3,910,979	+		IAI47_18375	0.59	+0.0
3,910,979	+		IAI47_18375	0.59	-1.6
3,910,979	+		IAI47_18375	0.59	+2.1
3,910,980	-		IAI47_18375	0.59	-0.1
3,911,022	+		IAI47_18375	0.64	-0.2
3,911,022	+		IAI47_18375	0.64	-1.2
3,911,023	-		IAI47_18375	0.64	+0.9
3,911,023	-		IAI47_18375	0.64	-1.7
3,911,023	-		IAI47_18375	0.64	+2.3
3,911,023	-		IAI47_18375	0.64	-0.7
3,911,111	+		IAI47_18375	0.73	-1.6
3,911,111	+		IAI47_18375	0.73	+1.6
3,911,112	-		IAI47_18375	0.74	-1.9
3,911,112	-		IAI47_18375	0.74	-0.2
3,911,185	-		IAI47_18375	0.82	-1.6
3,911,226	+		IAI47_18375	0.86	+0.5
3,911,227	-		IAI47_18375	0.86	-0.1
3,911,227	-		IAI47_18375	0.86	-1.3
3,911,345	-				-0.1
3,911,354	+				-1.5
3,911,354	+				-1.3
3,911,355	-				+1.8
3,911,355	-				-0.7
3,911,355	-				+0.5
3,911,364	+				-0.5
3,911,365	-				-0.1
3,911,390	+				+1.0
3,911,391	-				-1.1
3,911,391	-				-1.7
3,911,391	-				+0.3
3,911,429	+		IAI47_18380	0.11	-0.5
3,911,429	+		IAI47_18380	0.11	-1.2
3,911,430	-		IAI47_18380	0.11	-0.0
3,911,453	+		IAI47_18380	0.13	-1.0
3,911,454	-		IAI47_18380	0.13	-0.4
3,911,454	-		IAI47_18380	0.13	+0.3
3,911,454	-		IAI47_18380	0.13	+1.3
3,911,494	+		IAI47_18380	0.17	-0.3
3,911,494	+		IAI47_18380	0.17	+0.0
3,911,495	-		IAI47_18380	0.17	+0.6
3,911,495	-		IAI47_18380	0.17	-0.3
3,911,495	-		IAI47_18380	0.17	-1.4
3,911,512	-		IAI47_18380	0.19	+1.1
3,911,662	+		IAI47_18380	0.33	-1.6
3,911,662	+		IAI47_18380	0.33	-1.9
3,911,662	+		IAI47_18380	0.33	+0.5
3,911,662	+		IAI47_18380	0.33	-0.5
3,911,663	-		IAI47_18380	0.33	+0.3
3,911,663	-		IAI47_18380	0.33	+0.5
3,911,663	-		IAI47_18380	0.33	+0.2
3,911,694	+		IAI47_18380	0.36	+0.9
3,911,694	+		IAI47_18380	0.36	-1.6
3,911,694	+		IAI47_18380	0.36	-1.0
3,911,694	+		IAI47_18380	0.36	-0.0
3,911,694	+		IAI47_18380	0.36	-2.0
3,911,694	+		IAI47_18380	0.36	-0.6
3,911,695	-		IAI47_18380	0.36	+2.5
3,911,695	-		IAI47_18380	0.36	+1.3
3,911,695	-		IAI47_18380	0.36	+1.8
3,911,695	-		IAI47_18380	0.36	-2.3
3,911,695	-		IAI47_18380	0.36	+1.0
3,911,697	+		IAI47_18380	0.36	+0.8
3,911,705	+		IAI47_18380	0.37	+0.7
3,911,705	+		IAI47_18380	0.37	+2.8
3,911,705	+		IAI47_18380	0.37	+1.7
3,911,705	+		IAI47_18380	0.37	-1.2
3,911,706	-		IAI47_18380	0.37	-0.2
3,911,706	-		IAI47_18380	0.37	-1.3
3,911,706	-		IAI47_18380	0.37	-2.0
3,911,814	-		IAI47_18380	0.47	+2.9
3,911,932	+		IAI47_18380	0.58	-0.4
3,911,933	-		IAI47_18380	0.58	-0.4
3,912,111	+		IAI47_18380	0.75	-2.2
3,912,111	+		IAI47_18380	0.75	+0.5
3,912,212	+		IAI47_18380	0.85	-0.4
3,912,213	-		IAI47_18380	0.85	+0.9
3,912,238	-		IAI47_18380	0.87	+0.2
3,912,274	-				-1.1
3,912,298	+				-1.7
3,912,298	+				+0.1
3,912,332	-				-2.2