Strain Fitness in Pantoea sp. MT58 around IAI47_14145

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,990,011	-		IAI47_14140	0.75	+0.1
2,990,056	+		IAI47_14140	0.77	+0.3
2,990,056	+		IAI47_14140	0.77	+0.9
2,990,056	+		IAI47_14140	0.77	+1.6
2,990,057	-		IAI47_14140	0.77	-1.0
2,990,057	-		IAI47_14140	0.77	-1.4
2,990,159	+		IAI47_14140	0.79	+1.0
2,990,159	+		IAI47_14140	0.79	+0.9
2,990,159	+		IAI47_14140	0.79	-0.7
2,990,160	-		IAI47_14140	0.79	+0.2
2,990,160	-		IAI47_14140	0.79	+4.6
2,990,160	-		IAI47_14140	0.79	-0.4
2,990,160	-		IAI47_14140	0.79	+1.8
2,990,160	-		IAI47_14140	0.79	+1.9
2,990,296	+		IAI47_14140	0.83	+0.6
2,990,296	+		IAI47_14140	0.83	+2.0
2,990,296	+		IAI47_14140	0.83	-1.8
2,990,297	-		IAI47_14140	0.83	-0.8
2,990,344	+		IAI47_14140	0.84	-0.7
2,990,345	-		IAI47_14140	0.84	-0.4
2,990,358	+		IAI47_14140	0.85	-1.7
2,990,358	+		IAI47_14140	0.85	+2.9
2,990,358	+		IAI47_14140	0.85	+1.7
2,990,358	+		IAI47_14140	0.85	+1.0
2,990,358	+		IAI47_14140	0.85	+0.3
2,990,359	-		IAI47_14140	0.85	-0.2
2,990,372	+		IAI47_14140	0.85	+0.4
2,990,372	+		IAI47_14140	0.85	-2.2
2,990,385	+		IAI47_14140	0.85	-2.2
2,990,385	+		IAI47_14140	0.85	-1.3
2,990,509	+		IAI47_14140	0.89	-0.8
2,990,509	+		IAI47_14140	0.89	-1.3
2,990,509	+		IAI47_14140	0.89	+0.8
2,990,509	+		IAI47_14140	0.89	+2.2
2,990,509	+		IAI47_14140	0.89	-0.7
2,990,509	+		IAI47_14140	0.89	-0.9
2,990,509	+		IAI47_14140	0.89	-1.4
2,990,510	-		IAI47_14140	0.89	-0.7
2,990,510	-		IAI47_14140	0.89	-1.2
2,990,513	-		IAI47_14140	0.89	-0.2
2,990,513	-		IAI47_14140	0.89	-2.6
2,990,524	-		IAI47_14140	0.89	+0.1
2,990,595	-				+0.5
2,990,611	+				-0.2
2,990,611	+				-0.5
2,990,611	+				+0.1
2,990,612	-				+0.9
2,990,612	-				-1.7
2,990,612	-				+0.9
2,990,612	-				-1.7
2,990,612	-				-0.9
2,990,612	-				-0.8
2,990,612	-				-0.5
2,990,733	+				+1.3
2,990,733	+				+0.4
2,990,733	+				-1.2
2,990,733	+				+2.3
2,990,733	+				-0.5
2,990,733	+				+0.9
2,990,733	+				+1.6
2,990,734	-				-1.6
2,990,734	-				+0.2
2,990,734	-				-1.9
2,990,734	-				-3.1
2,990,734	-				+0.6
2,990,734	-				+0.3
2,990,734	-				+0.6
2,990,734	-				+0.3
2,990,734	-				-1.0
2,990,740	+				-1.2
2,990,741	-				+0.4
2,990,746	+				+2.3
2,990,746	+				+1.2
2,990,746	+				-1.9
2,990,746	+				-1.2
2,990,746	+				+0.9
2,990,746	+				+0.7
2,990,747	-				+3.0
2,990,747	-				+0.9
2,990,755	+				-1.0
2,990,755	+				-0.5
2,990,755	+				-0.0
2,990,755	+				-0.3
2,990,755	+				+1.1
2,990,755	+				-0.9
2,990,755	+				-2.2
2,990,756	-				+2.6
2,990,756	-				-1.7
2,990,756	-				+1.0
2,990,756	-				+2.8
2,990,756	-				+0.6
2,990,756	-				-1.7
2,990,776	-				+1.2
2,990,815	-				+0.6
2,990,815	-				-0.4
2,990,815	-				+0.2
2,990,833	+				+0.1
2,990,834	-				-2.8
2,990,834	-				+0.1
2,990,849	-				+0.4
2,990,851	+				+0.4
2,990,851	+				-2.2
2,990,851	+				-2.5
2,990,851	+				-1.0
2,990,851	+				-3.7
2,990,852	-				+0.6
2,990,852	-				-1.5
2,990,852	-				-0.9
2,990,852	-				+0.8
2,990,852	-				+2.1
2,990,880	+				-3.2
2,990,880	+				+1.3
2,990,881	-				-0.7
2,990,941	+				-0.5
2,990,953	+				+0.3
2,990,994	+		IAI47_14145	0.13	-2.7
2,990,994	+		IAI47_14145	0.13	-0.2
2,990,994	+		IAI47_14145	0.13	-2.3
2,990,994	+		IAI47_14145	0.13	+0.7
2,990,995	-		IAI47_14145	0.13	-1.7
2,990,995	-		IAI47_14145	0.13	-0.7
2,991,035	-		IAI47_14145	0.25	-2.7
2,991,035	-		IAI47_14145	0.25	+0.8
2,991,035	-		IAI47_14145	0.25	-1.2
2,991,081	+		IAI47_14145	0.39	-0.4
2,991,081	+		IAI47_14145	0.39	+2.6
2,991,081	+		IAI47_14145	0.39	+0.6
2,991,081	+		IAI47_14145	0.39	-1.0
2,991,081	+		IAI47_14145	0.39	-0.4
2,991,081	+		IAI47_14145	0.39	+0.6
2,991,170	+		IAI47_14145	0.66	+0.5
2,991,170	+		IAI47_14145	0.66	+1.2
2,991,171	-		IAI47_14145	0.66	-1.9
2,991,171	-		IAI47_14145	0.66	+1.6
2,991,171	-		IAI47_14145	0.66	-0.4
2,991,171	-		IAI47_14145	0.66	-0.8
2,991,171	-		IAI47_14145	0.66	-2.9
2,991,215	-		IAI47_14145	0.80	-0.5
2,991,215	-		IAI47_14145	0.80	-0.4
2,991,261	+				+0.1
2,991,262	-				+0.2
2,991,275	+				+0.5
2,991,275	+				+3.2
2,991,286	+				+0.5
2,991,314	+				+2.5
2,991,315	-				-1.1
2,991,315	-				+0.1
2,991,317	+				-1.9
2,991,318	-				+3.1
2,991,328	+				+0.9
2,991,328	+				+0.5
2,991,328	+				+0.3
2,991,328	+				+0.6
2,991,328	+				-2.4
2,991,328	+				+1.5
2,991,328	+				-0.8
2,991,328	+				+0.5
2,991,328	+				+0.6
2,991,329	-				+0.6
2,991,329	-				-2.5
2,991,329	-				+0.6
2,991,329	-				+3.3
2,991,329	-				-0.7
2,991,329	-				+2.1
2,991,329	-				-1.3
2,991,329	-				+0.1
2,991,329	-				-1.8
2,991,329	-				+0.9
2,991,329	-				-0.7
2,991,329	-				-3.0
2,991,354	+				+0.6
2,991,354	+				-0.3
2,991,354	+				-0.9
2,991,355	-				-2.4
2,991,355	-				-1.7
2,991,355	-				+1.4
2,991,360	+				-0.2
2,991,360	+				-1.8
2,991,361	-				-2.5
2,991,361	-				-1.5
2,991,381	+				+1.2
2,991,381	+				-1.7
2,991,381	+				-0.8
2,991,382	-				+0.3
2,991,382	-				-2.0
2,991,382	-				-0.9
2,991,382	-				-1.6
2,991,382	-				+1.6
2,991,386	+				-1.7
2,991,387	-				-0.8
2,991,409	+				+1.8
2,991,409	+				+0.6
2,991,410	-				+0.5
2,991,410	-				-0.1
2,991,486	+				+2.3
2,991,486	+				-3.4
2,991,487	-				-2.5
2,991,490	+				-1.5
2,991,491	-				+0.6
2,991,497	+				+1.5
2,991,497	+				-2.2
2,991,497	+				-1.4
2,991,498	-				+1.5
2,991,498	-				+1.8
2,991,522	+				+0.1
2,991,522	+				+1.9
2,991,523	-				-1.4
2,991,523	-				+3.8
2,991,564	+				-2.2
2,991,565	-				-0.7
2,991,565	-				+0.1
2,991,642	-				-0.8
2,991,734	-				+0.2
2,991,785	+		IAI47_14150	0.12	-1.5
2,991,803	+		IAI47_14150	0.14	+0.3
2,991,803	+		IAI47_14150	0.14	-0.3
2,991,803	+		IAI47_14150	0.14	-0.3
2,991,803	+		IAI47_14150	0.14	+1.1
2,991,804	-		IAI47_14150	0.14	+0.6
2,991,820	+		IAI47_14150	0.15	+0.6
2,991,824	+		IAI47_14150	0.15	+2.1
2,991,824	+		IAI47_14150	0.15	+4.9
2,991,825	-		IAI47_14150	0.15	-2.4
2,991,836	+		IAI47_14150	0.16	-1.0
2,991,837	-		IAI47_14150	0.16	-1.5
2,991,837	-		IAI47_14150	0.16	+0.1
2,991,854	+		IAI47_14150	0.18	+3.4
2,991,907	-		IAI47_14150	0.22	+0.3
2,991,907	-		IAI47_14150	0.22	+0.6
2,992,068	+		IAI47_14150	0.35	-1.5
2,992,068	+		IAI47_14150	0.35	+1.2
2,992,068	+		IAI47_14150	0.35	+0.2
2,992,068	+		IAI47_14150	0.35	-1.4
2,992,068	+		IAI47_14150	0.35	-1.4
2,992,068	+		IAI47_14150	0.35	+2.8
2,992,068	+		IAI47_14150	0.35	-0.5
2,992,068	+		IAI47_14150	0.35	+0.6
2,992,068	+		IAI47_14150	0.35	-1.1
2,992,069	-		IAI47_14150	0.35	+0.9
2,992,069	-		IAI47_14150	0.35	-0.7
2,992,069	-		IAI47_14150	0.35	+0.2
2,992,069	-		IAI47_14150	0.35	+1.3
2,992,069	-		IAI47_14150	0.35	+1.3
2,992,069	-		IAI47_14150	0.35	+2.6
2,992,069	-		IAI47_14150	0.35	+0.3
2,992,088	+		IAI47_14150	0.37	-1.4
2,992,088	+		IAI47_14150	0.37	-0.4
2,992,088	+		IAI47_14150	0.37	-1.5
2,992,088	+		IAI47_14150	0.37	+1.6
2,992,088	+		IAI47_14150	0.37	+0.3
2,992,089	-		IAI47_14150	0.37	+1.7
2,992,089	-		IAI47_14150	0.37	+2.2
2,992,089	-		IAI47_14150	0.37	-2.2
2,992,089	-		IAI47_14150	0.37	+1.9
2,992,092	-		IAI47_14150	0.37	-1.2
2,992,098	-		IAI47_14150	0.38	-0.6
2,992,140	+		IAI47_14150	0.41	-0.7
2,992,140	+		IAI47_14150	0.41	-0.1
2,992,140	+		IAI47_14150	0.41	-0.9
2,992,140	+		IAI47_14150	0.41	+2.5
2,992,141	-		IAI47_14150	0.41	+0.6
2,992,141	-		IAI47_14150	0.41	+1.1
2,992,141	-		IAI47_14150	0.41	-1.2
2,992,141	-		IAI47_14150	0.41	-1.5
2,992,173	+		IAI47_14150	0.44	-0.1
2,992,173	+		IAI47_14150	0.44	+1.3
2,992,173	+		IAI47_14150	0.44	+1.4
2,992,173	+		IAI47_14150	0.44	+1.6
2,992,173	+		IAI47_14150	0.44	+1.0
2,992,174	-		IAI47_14150	0.44	+0.5
2,992,174	-		IAI47_14150	0.44	+1.8
2,992,180	+		IAI47_14150	0.44	+0.3
2,992,181	-		IAI47_14150	0.44	+2.1
2,992,181	-		IAI47_14150	0.44	-1.2
2,992,181	-		IAI47_14150	0.44	+0.4
2,992,181	-		IAI47_14150	0.44	-0.1
2,992,181	-		IAI47_14150	0.44	+1.6
2,992,181	-		IAI47_14150	0.44	+1.3
2,992,215	+		IAI47_14150	0.47	-0.7
2,992,215	+		IAI47_14150	0.47	+1.1
2,992,216	-		IAI47_14150	0.47	-0.9
2,992,216	-		IAI47_14150	0.47	-0.5
2,992,216	-		IAI47_14150	0.47	-0.5