Strain Fitness in Pantoea sp. MT58 around IAI47_13515

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,866,653	+				+0.6
2,866,677	-				-1.8
2,866,717	+				+2.5
2,866,819	-				+0.3
2,866,880	+				+0.2
2,866,880	+				-0.9
2,866,881	-				-0.7
2,866,881	-				+3.4
2,866,915	+				+1.8
2,866,916	-				-0.4
2,866,916	-				-1.3
2,866,916	-				+0.2
2,866,935	+				-0.7
2,866,949	+				-0.1
2,866,950	-				+0.8
2,866,950	-				-0.6
2,866,950	-				+2.7
2,867,075	+		IAI47_13510	0.24	+0.4
2,867,075	+		IAI47_13510	0.24	+1.4
2,867,076	-		IAI47_13510	0.24	-0.1
2,867,157	+		IAI47_13510	0.35	-1.0
2,867,157	+		IAI47_13510	0.35	+2.4
2,867,157	+		IAI47_13510	0.35	+1.0
2,867,157	+		IAI47_13510	0.35	-0.6
2,867,157	+		IAI47_13510	0.35	-1.5
2,867,157	+		IAI47_13510	0.35	+2.9
2,867,157	+		IAI47_13510	0.35	+2.0
2,867,157	+		IAI47_13510	0.35	-0.7
2,867,157	+		IAI47_13510	0.35	+2.1
2,867,158	-		IAI47_13510	0.35	-1.6
2,867,158	-		IAI47_13510	0.35	+1.6
2,867,183	+		IAI47_13510	0.38	+0.2
2,867,204	+		IAI47_13510	0.41	+1.1
2,867,204	+		IAI47_13510	0.41	-0.2
2,867,205	-		IAI47_13510	0.41	+1.0
2,867,205	-		IAI47_13510	0.41	+1.4
2,867,205	-		IAI47_13510	0.41	-1.3
2,867,272	+		IAI47_13510	0.51	-0.4
2,867,296	-		IAI47_13510	0.54	+0.2
2,867,296	-		IAI47_13510	0.54	-2.9
2,867,463	-		IAI47_13510	0.77	+0.0
2,867,463	-		IAI47_13510	0.77	+3.7
2,867,491	+		IAI47_13510	0.81	-0.7
2,867,492	-		IAI47_13510	0.81	+1.3
2,867,532	+		IAI47_13510	0.87	-0.6
2,867,532	+		IAI47_13510	0.87	+0.4
2,867,533	-				+1.6
2,867,533	-		IAI47_13510	0.87	-0.8
2,867,606	+				+0.7
2,867,606	+				-3.3
2,867,607	-				+0.6
2,867,632	+				+2.0
2,867,632	+				-1.6
2,867,632	+				+0.6
2,867,633	-				-1.0
2,867,633	-				+0.4
2,867,633	-				-1.7
2,867,650	+				+0.4
2,867,650	+				+0.6
2,867,650	+				+1.6
2,867,651	-				-1.4
2,867,651	-				-0.3
2,867,684	+				+0.0
2,867,684	+				+1.4
2,867,684	+				+0.9
2,867,685	-				-3.2
2,867,685	-				+0.6
2,867,685	-				-3.4
2,867,689	+				+2.0
2,867,690	-				-1.9
2,867,690	-				-1.6
2,867,743	+		IAI47_13515	0.17	+1.1
2,867,743	+		IAI47_13515	0.17	-2.0
2,867,744	-		IAI47_13515	0.17	+1.3
2,867,744	-		IAI47_13515	0.17	+2.8
2,867,744	-		IAI47_13515	0.17	-2.1
2,867,744	-		IAI47_13515	0.17	+0.4
2,867,861	+		IAI47_13515	0.34	-0.5
2,867,861	+		IAI47_13515	0.34	+0.6
2,867,861	+		IAI47_13515	0.34	+1.1
2,867,902	-		IAI47_13515	0.40	-0.2
2,867,914	+		IAI47_13515	0.42	+1.2
2,867,914	+		IAI47_13515	0.42	+2.3
2,867,914	+		IAI47_13515	0.42	+0.6
2,867,914	+		IAI47_13515	0.42	+0.2
2,867,914	+		IAI47_13515	0.42	+0.0
2,867,915	-		IAI47_13515	0.42	+3.2
2,867,915	-		IAI47_13515	0.42	-1.4
2,867,915	-		IAI47_13515	0.42	-0.4
2,867,915	-		IAI47_13515	0.42	+0.3
2,867,915	-		IAI47_13515	0.42	+0.4
2,867,915	-		IAI47_13515	0.42	-1.0
2,867,941	+		IAI47_13515	0.46	+0.2
2,867,941	+		IAI47_13515	0.46	-1.4
2,868,074	+		IAI47_13515	0.66	-1.9
2,868,075	-		IAI47_13515	0.66	-2.0
2,868,075	-		IAI47_13515	0.66	+0.6
2,868,100	+		IAI47_13515	0.70	+2.5
2,868,100	+		IAI47_13515	0.70	+0.6
2,868,101	-		IAI47_13515	0.70	+2.0
2,868,101	-		IAI47_13515	0.70	+1.6
2,868,101	-		IAI47_13515	0.70	-1.0
2,868,194	+		IAI47_13515	0.84	+0.0
2,868,194	+		IAI47_13515	0.84	-1.6
2,868,194	+		IAI47_13515	0.84	+4.0
2,868,195	-		IAI47_13515	0.84	-2.6
2,868,195	-		IAI47_13515	0.84	-0.1
2,868,195	-		IAI47_13515	0.84	+0.3
2,868,196	+		IAI47_13515	0.84	-1.8
2,868,196	+		IAI47_13515	0.84	+1.5
2,868,197	-		IAI47_13515	0.84	+3.3
2,868,197	-		IAI47_13515	0.84	+0.2
2,868,260	+				-2.0
2,868,261	-				+2.1
2,868,284	+				-0.4
2,868,288	-				-0.8
2,868,288	-				-0.9
2,868,288	-				+0.6
2,868,288	-				+0.3
2,868,319	-				-2.7
2,868,319	-				+2.6
2,868,323	+				+0.8
2,868,324	-				+1.6
2,868,324	-				+2.1
2,868,331	-				+1.1
2,868,331	-				-0.4
2,868,374	+				-1.4
2,868,374	+				+3.5
2,868,375	-		IAI47_13520	0.10	+0.8
2,868,401	+		IAI47_13520	0.13	-0.2
2,868,401	+		IAI47_13520	0.13	-0.1
2,868,401	+		IAI47_13520	0.13	+1.2
2,868,401	+		IAI47_13520	0.13	-1.6
2,868,401	+		IAI47_13520	0.13	+1.7
2,868,402	-		IAI47_13520	0.14	-1.7
2,868,402	-		IAI47_13520	0.14	-0.6
2,868,402	-		IAI47_13520	0.14	+0.8
2,868,554	-		IAI47_13520	0.34	-0.8
2,868,554	-		IAI47_13520	0.34	+1.5
2,868,731	+		IAI47_13520	0.57	-2.4
2,868,731	+		IAI47_13520	0.57	-1.0
2,868,732	-		IAI47_13520	0.57	-1.0
2,868,732	-		IAI47_13520	0.57	-1.0
2,868,749	-		IAI47_13520	0.60	+0.9
2,868,749	-		IAI47_13520	0.60	+2.1
2,868,786	+		IAI47_13520	0.64	-1.3
2,868,786	+		IAI47_13520	0.64	+0.0
2,868,786	+		IAI47_13520	0.64	+0.0
2,868,786	+		IAI47_13520	0.64	+2.0
2,868,786	+		IAI47_13520	0.64	-2.8
2,868,786	+		IAI47_13520	0.64	-0.7
2,868,787	-		IAI47_13520	0.65	-0.5
2,868,787	-		IAI47_13520	0.65	+1.3
2,868,787	-		IAI47_13520	0.65	-0.7
2,868,787	-		IAI47_13520	0.65	+3.7
2,868,885	+		IAI47_13520	0.78	+0.6
2,868,886	-		IAI47_13520	0.78	+0.3
2,868,886	-		IAI47_13520	0.78	+0.6
2,868,993	+				-1.0
2,868,993	+				-2.1
2,868,993	+				+0.2
2,869,036	+				+0.3
2,869,037	-				-1.1
2,869,037	-				-0.3
2,869,037	-				+1.0
2,869,037	-				+1.1
2,869,079	+				-1.6
2,869,080	-				-0.6
2,869,080	-				-0.5
2,869,109	+				-1.5
2,869,109	+				-0.1
2,869,110	-				-1.7
2,869,110	-				-0.1
2,869,110	-				-0.7
2,869,211	+		IAI47_13525	0.15	-1.7
2,869,211	+		IAI47_13525	0.15	-2.0
2,869,212	-		IAI47_13525	0.15	-0.9
2,869,212	-		IAI47_13525	0.15	-1.9