Strain Fitness in Pantoea sp. MT58 around IAI47_12135

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,570,056	-		IAI47_12130	0.12	-1.1
2,570,139	+		IAI47_12130	0.19	-1.5
2,570,139	+		IAI47_12130	0.19	+2.5
2,570,140	-		IAI47_12130	0.19	-1.4
2,570,232	+		IAI47_12130	0.28	+1.3
2,570,295	+		IAI47_12130	0.33	+2.1
2,570,295	+		IAI47_12130	0.33	-0.4
2,570,295	+		IAI47_12130	0.33	-1.1
2,570,295	+		IAI47_12130	0.33	+1.2
2,570,295	+		IAI47_12130	0.33	-3.8
2,570,295	+		IAI47_12130	0.33	+0.7
2,570,295	+		IAI47_12130	0.33	-0.8
2,570,295	+		IAI47_12130	0.33	-0.7
2,570,296	-		IAI47_12130	0.34	-1.9
2,570,296	-		IAI47_12130	0.34	-0.7
2,570,296	-		IAI47_12130	0.34	-0.0
2,570,296	-		IAI47_12130	0.34	+0.6
2,570,337	+		IAI47_12130	0.37	-2.1
2,570,337	+		IAI47_12130	0.37	-2.4
2,570,338	-		IAI47_12130	0.37	+3.6
2,570,338	-		IAI47_12130	0.37	-0.2
2,570,338	-		IAI47_12130	0.37	-0.7
2,570,340	+		IAI47_12130	0.37	-2.9
2,570,340	+		IAI47_12130	0.37	-0.1
2,570,340	+		IAI47_12130	0.37	+0.4
2,570,341	-		IAI47_12130	0.38	-1.1
2,570,341	-		IAI47_12130	0.38	-0.4
2,570,341	-		IAI47_12130	0.38	-0.5
2,570,364	+		IAI47_12130	0.40	+0.2
2,570,424	+		IAI47_12130	0.45	-2.2
2,570,424	+		IAI47_12130	0.45	-1.0
2,570,424	+		IAI47_12130	0.45	-0.9
2,570,425	-		IAI47_12130	0.45	-0.7
2,570,425	-		IAI47_12130	0.45	+1.2
2,570,425	-		IAI47_12130	0.45	-1.3
2,570,425	-		IAI47_12130	0.45	-2.5
2,570,425	-		IAI47_12130	0.45	-1.8
2,570,425	-		IAI47_12130	0.45	+0.9
2,570,425	-		IAI47_12130	0.45	-2.3
2,570,454	+		IAI47_12130	0.48	+0.1
2,570,455	-		IAI47_12130	0.48	+0.3
2,570,455	-		IAI47_12130	0.48	-0.1
2,570,455	-		IAI47_12130	0.48	-0.7
2,570,455	-		IAI47_12130	0.48	+0.4
2,570,509	+		IAI47_12130	0.53	-1.7
2,570,509	+		IAI47_12130	0.53	+1.8
2,570,510	-		IAI47_12130	0.53	-0.2
2,570,510	-		IAI47_12130	0.53	+1.2
2,570,510	-		IAI47_12130	0.53	-1.0
2,570,529	+		IAI47_12130	0.55	+0.3
2,570,529	+		IAI47_12130	0.55	-3.8
2,570,529	+		IAI47_12130	0.55	-1.9
2,570,529	+		IAI47_12130	0.55	-0.6
2,570,530	-		IAI47_12130	0.55	-2.3
2,570,530	-		IAI47_12130	0.55	+2.5
2,570,530	-		IAI47_12130	0.55	-1.8
2,570,601	+		IAI47_12130	0.61	-0.0
2,570,601	+		IAI47_12130	0.61	-2.2
2,570,601	+		IAI47_12130	0.61	-0.8
2,570,601	+		IAI47_12130	0.61	-0.4
2,570,601	+		IAI47_12130	0.61	+0.1
2,570,601	+		IAI47_12130	0.61	-1.8
2,570,601	+		IAI47_12130	0.61	-0.9
2,570,601	+		IAI47_12130	0.61	-2.0
2,570,601	+		IAI47_12130	0.61	-1.1
2,570,602	-		IAI47_12130	0.61	+0.3
2,570,602	-		IAI47_12130	0.61	-2.7
2,570,602	-		IAI47_12130	0.61	-0.1
2,570,602	-		IAI47_12130	0.61	+0.2
2,570,602	-		IAI47_12130	0.61	-4.2
2,570,602	-		IAI47_12130	0.61	-0.3
2,570,602	-		IAI47_12130	0.61	+0.1
2,570,604	+		IAI47_12130	0.61	+0.7
2,570,605	-		IAI47_12130	0.61	-0.3
2,570,631	+		IAI47_12130	0.64	-0.3
2,570,631	+		IAI47_12130	0.64	+0.7
2,570,656	+		IAI47_12130	0.66	-0.8
2,570,656	+		IAI47_12130	0.66	-1.4
2,570,657	-		IAI47_12130	0.66	-2.1
2,570,688	+		IAI47_12130	0.69	-1.7
2,570,808	+		IAI47_12130	0.80	-0.1
2,570,808	+		IAI47_12130	0.80	+0.1
2,570,808	+		IAI47_12130	0.80	-0.4
2,570,809	-		IAI47_12130	0.80	-1.9
2,570,809	-		IAI47_12130	0.80	-0.4
2,570,812	-		IAI47_12130	0.80	-2.1
2,570,848	-		IAI47_12130	0.83	+0.2
2,570,851	-		IAI47_12130	0.84	-1.5
2,570,851	-		IAI47_12130	0.84	-0.1
2,570,851	-		IAI47_12130	0.84	+2.7
2,570,948	-				-3.3
2,570,948	-				-0.9
2,571,023	-				-0.2
2,571,044	+				-1.5
2,571,044	+				-0.6
2,571,044	+				-0.1
2,571,045	-				+1.4
2,571,045	-				+1.4
2,571,045	-				-0.5
2,571,045	-				-0.0
2,571,045	-				-1.1
2,571,105	+				-1.7
2,571,105	+				+0.5
2,571,105	+				-0.6
2,571,105	+				-2.3
2,571,105	+				-1.8
2,571,106	-				-0.2
2,571,106	-				-1.5
2,571,106	-				+0.2
2,571,106	-				-1.3
2,571,107	+				-2.6
2,571,107	+				-0.8
2,571,107	+				-0.7
2,571,107	+				-1.0
2,571,107	+				-0.5
2,571,107	+				+0.3
2,571,107	+				-1.9
2,571,108	-				-0.8
2,571,108	-				+1.1
2,571,108	-				+0.3
2,571,108	-				-1.8
2,571,108	-				+1.5
2,571,122	+		IAI47_12135	0.11	+0.5
2,571,122	+		IAI47_12135	0.11	-2.3
2,571,123	-		IAI47_12135	0.11	-1.6
2,571,123	-		IAI47_12135	0.11	+0.0
2,571,130	-		IAI47_12135	0.12	+0.4
2,571,130	-		IAI47_12135	0.12	-0.3
2,571,150	+		IAI47_12135	0.15	-0.2
2,571,150	+		IAI47_12135	0.15	-0.9
2,571,151	-		IAI47_12135	0.15	-1.4
2,571,151	-		IAI47_12135	0.15	-0.3
2,571,151	-		IAI47_12135	0.15	-3.1
2,571,151	-		IAI47_12135	0.15	-1.1
2,571,151	-		IAI47_12135	0.15	+0.9
2,571,154	+		IAI47_12135	0.16	-1.8
2,571,155	-		IAI47_12135	0.16	-0.3
2,571,166	-		IAI47_12135	0.17	-1.4
2,571,228	+		IAI47_12135	0.26	-0.1
2,571,259	+		IAI47_12135	0.30	-0.6
2,571,259	+		IAI47_12135	0.30	+0.4
2,571,259	+		IAI47_12135	0.30	-0.3
2,571,259	+		IAI47_12135	0.30	-0.2
2,571,259	+		IAI47_12135	0.30	-0.4
2,571,259	+		IAI47_12135	0.30	-1.3
2,571,259	+		IAI47_12135	0.30	-1.5
2,571,260	-		IAI47_12135	0.31	-0.6
2,571,260	-		IAI47_12135	0.31	-0.6
2,571,260	-		IAI47_12135	0.31	-0.1
2,571,260	-		IAI47_12135	0.31	-1.3
2,571,260	-		IAI47_12135	0.31	+1.2
2,571,260	-		IAI47_12135	0.31	-0.6
2,571,260	-		IAI47_12135	0.31	+2.4
2,571,277	+		IAI47_12135	0.33	-1.3
2,571,278	-		IAI47_12135	0.33	+1.5
2,571,278	-		IAI47_12135	0.33	-0.4
2,571,278	-		IAI47_12135	0.33	-0.9
2,571,278	-		IAI47_12135	0.33	-0.5
2,571,278	-		IAI47_12135	0.33	-0.3
2,571,298	-		IAI47_12135	0.36	+0.2
2,571,315	+		IAI47_12135	0.38	+0.1
2,571,315	+		IAI47_12135	0.38	-0.5
2,571,315	+		IAI47_12135	0.38	-1.4
2,571,316	-		IAI47_12135	0.38	-1.8
2,571,316	-		IAI47_12135	0.38	-2.4
2,571,316	-		IAI47_12135	0.38	+0.3
2,571,318	+		IAI47_12135	0.39	+1.0
2,571,318	+		IAI47_12135	0.39	-0.6
2,571,318	+		IAI47_12135	0.39	+0.7
2,571,319	-		IAI47_12135	0.39	-1.2
2,571,319	-		IAI47_12135	0.39	-1.9
2,571,339	+		IAI47_12135	0.42	-0.5
2,571,340	-		IAI47_12135	0.42	-0.2
2,571,431	-		IAI47_12135	0.55	-1.6
2,571,432	+		IAI47_12135	0.55	+1.1
2,571,432	+		IAI47_12135	0.55	+2.4
2,571,433	-		IAI47_12135	0.55	-0.3
2,571,507	+		IAI47_12135	0.65	-0.1
2,571,507	+		IAI47_12135	0.65	-1.8
2,571,507	+		IAI47_12135	0.65	-1.9
2,571,507	+		IAI47_12135	0.65	-0.3
2,571,508	-		IAI47_12135	0.65	-0.5
2,571,531	+		IAI47_12135	0.69	-0.4
2,571,569	+		IAI47_12135	0.74	-0.7
2,571,569	+		IAI47_12135	0.74	+0.7
2,571,569	+		IAI47_12135	0.74	-1.6
2,571,570	-		IAI47_12135	0.74	-0.7
2,571,570	-		IAI47_12135	0.74	+0.6
2,571,570	-		IAI47_12135	0.74	-1.1
2,571,570	-		IAI47_12135	0.74	-0.6
2,571,570	-		IAI47_12135	0.74	-0.1
2,571,573	+		IAI47_12135	0.75	-1.0
2,571,573	+		IAI47_12135	0.75	+0.6
2,571,574	-		IAI47_12135	0.75	+0.8
2,571,574	-		IAI47_12135	0.75	-0.1
2,571,574	-		IAI47_12135	0.75	-0.9
2,571,595	+		IAI47_12135	0.78	+0.8
2,571,630	+		IAI47_12135	0.83	-0.5
2,571,630	+		IAI47_12135	0.83	-0.2
2,571,631	-		IAI47_12135	0.83	-1.1
2,571,631	-		IAI47_12135	0.83	-1.7
2,571,631	-		IAI47_12135	0.83	+0.6
2,571,631	-		IAI47_12135	0.83	-3.8
2,571,631	-		IAI47_12135	0.83	-1.5
2,571,631	-		IAI47_12135	0.83	-0.2
2,571,691	-				-1.8
2,571,715	+				-1.8
2,571,767	+				-1.8
2,571,767	+				+0.1
2,571,767	+				-2.1
2,571,767	+				-2.6
2,571,767	+				-3.3
2,571,768	-				-1.3
2,571,768	-				-1.3
2,571,768	-				+0.5
2,571,768	-				-1.9
2,571,768	-				-0.5
2,571,768	-				+0.6
2,571,770	+				+0.2
2,571,770	+				+1.7
2,571,770	+				-0.2
2,571,770	+				-0.7
2,571,770	+				-0.6
2,571,770	+				+0.9
2,571,770	+				-0.1
2,571,771	-				+1.1
2,571,771	-				+1.0
2,571,771	-				+1.4
2,571,771	-				+1.1
2,571,826	+				+0.6
2,571,826	+				-0.1
2,571,920	-		IAI47_12140	0.14	-2.4
2,571,944	+		IAI47_12140	0.17	-1.2
2,571,954	-		IAI47_12140	0.18	-0.6
2,571,954	-		IAI47_12140	0.18	+0.4
2,572,062	+		IAI47_12140	0.32	-0.3
2,572,062	+		IAI47_12140	0.32	-0.5
2,572,062	+		IAI47_12140	0.32	-1.5
2,572,062	+		IAI47_12140	0.32	-1.3
2,572,078	+		IAI47_12140	0.34	-0.4
2,572,079	-		IAI47_12140	0.34	-0.2
2,572,149	+		IAI47_12140	0.43	-2.1
2,572,149	+		IAI47_12140	0.43	-0.4
2,572,149	+		IAI47_12140	0.43	-3.0
2,572,149	+		IAI47_12140	0.43	-0.5
2,572,255	-		IAI47_12140	0.56	-0.8
2,572,256	+		IAI47_12140	0.56	-1.8
2,572,256	+		IAI47_12140	0.56	-0.5
2,572,257	-		IAI47_12140	0.57	+3.3
2,572,257	-		IAI47_12140	0.57	-0.9
2,572,257	-		IAI47_12140	0.57	-1.9
2,572,257	-		IAI47_12140	0.57	-1.5
2,572,257	-		IAI47_12140	0.57	+0.7
2,572,257	-		IAI47_12140	0.57	-0.5
2,572,293	-		IAI47_12140	0.61	-0.0
2,572,314	+		IAI47_12140	0.64	+1.7
2,572,315	-		IAI47_12140	0.64	-1.2
2,572,315	-		IAI47_12140	0.64	-0.1
2,572,315	-		IAI47_12140	0.64	-2.8
2,572,353	+		IAI47_12140	0.69	-0.6
2,572,353	+		IAI47_12140	0.69	+4.1
2,572,354	-		IAI47_12140	0.69	-0.4
2,572,460	+		IAI47_12140	0.83	-2.7
2,572,461	-		IAI47_12140	0.83	-1.1
2,572,494	+		IAI47_12140	0.87	-0.7
2,572,572	+				-0.5
2,572,573	-				-0.3
2,572,573	-				-0.8
2,572,582	+				-1.1
2,572,582	+				-1.1
2,572,583	-				-0.3
2,572,603	-				+1.1
2,572,712	+		IAI47_12145	0.13	+0.2
2,572,713	-		IAI47_12145	0.13	-0.1
2,572,713	-		IAI47_12145	0.13	-0.2