Strain Fitness in Pantoea sp. MT58 around IAI47_10145

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,146,413	+				-0.7
2,146,413	+				+1.2
2,146,413	+				+2.1
2,146,414	-				+0.3
2,146,414	-				-0.6
2,146,414	-				+0.9
2,146,414	-				+0.6
2,146,414	-				+2.5
2,146,450	+				-0.4
2,146,451	-				+1.3
2,146,545	+		IAI47_10140	0.16	+2.4
2,146,545	+		IAI47_10140	0.16	+3.1
2,146,545	+		IAI47_10140	0.16	-1.5
2,146,609	+		IAI47_10140	0.23	-0.7
2,146,609	+		IAI47_10140	0.23	-1.1
2,146,609	+		IAI47_10140	0.23	+0.5
2,146,609	+		IAI47_10140	0.23	-0.1
2,146,609	+		IAI47_10140	0.23	-0.1
2,146,609	+		IAI47_10140	0.23	-2.4
2,146,609	+		IAI47_10140	0.23	+0.2
2,146,609	+		IAI47_10140	0.23	+3.2
2,146,609	+		IAI47_10140	0.23	+1.7
2,146,609	+		IAI47_10140	0.23	+2.9
2,146,609	+		IAI47_10140	0.23	+0.9
2,146,609	+		IAI47_10140	0.23	+1.1
2,146,609	+		IAI47_10140	0.23	+1.1
2,146,610	-		IAI47_10140	0.23	+0.8
2,146,610	-		IAI47_10140	0.23	+0.0
2,146,610	-		IAI47_10140	0.23	-1.7
2,146,610	-		IAI47_10140	0.23	+1.1
2,146,610	-		IAI47_10140	0.23	-0.2
2,146,610	-		IAI47_10140	0.23	+0.0
2,146,610	-		IAI47_10140	0.23	-0.7
2,146,610	-		IAI47_10140	0.23	-2.3
2,146,654	+		IAI47_10140	0.28	+1.3
2,146,654	+		IAI47_10140	0.28	+0.5
2,146,655	-		IAI47_10140	0.28	-2.1
2,146,655	-		IAI47_10140	0.28	+1.2
2,146,685	-		IAI47_10140	0.32	-0.2
2,146,685	-		IAI47_10140	0.32	-1.3
2,146,702	+		IAI47_10140	0.34	+0.6
2,146,728	+		IAI47_10140	0.36	-0.2
2,146,729	-		IAI47_10140	0.37	-0.4
2,146,763	+		IAI47_10140	0.40	+0.2
2,146,794	+		IAI47_10140	0.44	+1.6
2,146,794	+		IAI47_10140	0.44	+3.9
2,146,794	+		IAI47_10140	0.44	-1.1
2,146,794	+		IAI47_10140	0.44	+0.7
2,146,794	+		IAI47_10140	0.44	-0.3
2,146,795	-		IAI47_10140	0.44	-0.8
2,146,795	-		IAI47_10140	0.44	-0.9
2,146,795	-		IAI47_10140	0.44	+4.1
2,146,890	+		IAI47_10140	0.54	+1.2
2,146,890	+		IAI47_10140	0.54	+1.3
2,146,891	-		IAI47_10140	0.55	+0.6
2,146,891	-		IAI47_10140	0.55	-0.7
2,146,891	-		IAI47_10140	0.55	+0.3
2,146,977	+		IAI47_10140	0.64	+1.1
2,146,977	+		IAI47_10140	0.64	+0.6
2,146,977	+		IAI47_10140	0.64	+0.3
2,146,978	-		IAI47_10140	0.64	+0.7
2,146,978	-		IAI47_10140	0.64	-0.4
2,146,980	+		IAI47_10140	0.64	-2.1
2,146,980	+		IAI47_10140	0.64	+0.3
2,146,981	-		IAI47_10140	0.65	-0.2
2,146,981	-		IAI47_10140	0.65	-0.3
2,146,981	-		IAI47_10140	0.65	+1.9
2,147,009	-		IAI47_10140	0.68	+4.0
2,147,152	+		IAI47_10140	0.84	+0.3
2,147,153	-		IAI47_10140	0.84	+1.8
2,147,153	-		IAI47_10140	0.84	-2.3
2,147,153	-		IAI47_10140	0.84	-1.0
2,147,153	-		IAI47_10140	0.84	+1.2
2,147,153	-		IAI47_10140	0.84	-1.2
2,147,153	-		IAI47_10140	0.84	-0.4
2,147,156	-		IAI47_10140	0.84	-0.8
2,147,444	+		IAI47_10145	0.26	-1.1
2,147,445	-		IAI47_10145	0.26	+0.9
2,147,445	-		IAI47_10145	0.26	-1.6
2,147,514	+		IAI47_10145	0.40	-1.5
2,147,515	-		IAI47_10145	0.41	+0.2
2,147,515	-		IAI47_10145	0.41	-1.0
2,147,515	-		IAI47_10145	0.41	-1.5
2,147,597	+		IAI47_10145	0.57	+2.7
2,147,598	-		IAI47_10145	0.57	-1.3
2,147,706	+		IAI47_10145	0.79	-0.8
2,147,707	-		IAI47_10145	0.79	-2.0
2,147,716	+		IAI47_10145	0.81	-2.1
2,147,716	+		IAI47_10145	0.81	-2.0
2,147,716	+		IAI47_10145	0.81	-0.9
2,147,716	+		IAI47_10145	0.81	+5.2
2,147,717	-		IAI47_10145	0.81	-1.7
2,147,831	+				+0.3
2,147,859	+				+3.4
2,147,860	-				+0.6
2,147,860	-				+1.2
2,147,862	+				+0.6
2,147,863	-				+0.3
2,147,863	-				+0.0
2,147,865	+				-1.8
2,147,865	+				+0.9
2,147,865	+				+0.6
2,147,865	+				+2.1
2,147,865	+				-1.5
2,147,865	+				-1.5
2,147,865	+				-1.7
2,147,866	-				+1.9
2,147,866	-				+0.9
2,147,866	-				+0.5
2,147,881	+				+0.3
2,147,881	+				-1.0
2,147,881	+				+0.7
2,147,881	+				-0.4
2,147,881	+				-1.7
2,147,882	-				-0.1
2,147,882	-				+0.2
2,147,882	-				-1.5
2,147,882	-				+0.3
2,147,882	-				+0.3
2,147,882	-				+0.5
2,147,924	+				+0.3
2,147,924	+				-0.9
2,147,924	+				+0.6
2,147,925	-				-0.8
2,147,925	-				-1.8
2,147,925	-				+0.9
2,148,029	+		IAI47_10150	0.16	+2.1
2,148,029	+		IAI47_10150	0.16	-0.1
2,148,030	-		IAI47_10150	0.16	+2.1
2,148,030	-		IAI47_10150	0.16	-0.3
2,148,047	+		IAI47_10150	0.18	-0.1
2,148,105	-		IAI47_10150	0.24	+2.0
2,148,112	+		IAI47_10150	0.25	+0.1
2,148,112	+		IAI47_10150	0.25	+1.3
2,148,112	+		IAI47_10150	0.25	+3.3
2,148,113	-		IAI47_10150	0.25	-1.8
2,148,134	-		IAI47_10150	0.27	-1.0
2,148,387	+		IAI47_10150	0.54	-0.8
2,148,387	+		IAI47_10150	0.54	-0.7
2,148,388	-		IAI47_10150	0.54	+0.0
2,148,403	+		IAI47_10150	0.56	+3.9
2,148,403	+		IAI47_10150	0.56	+1.3
2,148,439	+		IAI47_10150	0.60	-0.8
2,148,439	+		IAI47_10150	0.60	-0.1
2,148,440	-		IAI47_10150	0.60	-1.5
2,148,494	+		IAI47_10150	0.65	-0.7
2,148,494	+		IAI47_10150	0.65	-0.5
2,148,494	+		IAI47_10150	0.65	-1.7
2,148,495	-		IAI47_10150	0.65	+0.6
2,148,495	-		IAI47_10150	0.65	+0.3
2,148,495	-		IAI47_10150	0.65	+0.0
2,148,495	-		IAI47_10150	0.65	-2.1
2,148,699	+		IAI47_10150	0.87	+1.9
2,148,699	+		IAI47_10150	0.87	-0.3
2,148,700	-		IAI47_10150	0.87	+2.3
2,148,702	+		IAI47_10150	0.88	+0.4
2,148,702	+		IAI47_10150	0.88	+2.3
2,148,702	+		IAI47_10150	0.88	-1.5
2,148,703	-		IAI47_10150	0.88	+1.3
2,148,703	-		IAI47_10150	0.88	-0.3
2,148,703	-		IAI47_10150	0.88	+1.9
2,148,766	+				-2.2
2,148,766	+				+0.0
2,148,766	+				+0.2
2,148,767	-				+1.5
2,148,808	+				+1.9
2,148,808	+				-2.8