Strain Fitness in Pantoea sp. MT58 around IAI47_07730

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,638,536	+		IAI47_07725	0.46	+1.3
1,638,582	+		IAI47_07725	0.49	-0.6
1,638,582	+		IAI47_07725	0.49	-1.0
1,638,582	+		IAI47_07725	0.49	+0.4
1,638,583	-		IAI47_07725	0.49	+2.3
1,638,583	-		IAI47_07725	0.49	-1.6
1,638,583	-		IAI47_07725	0.49	-1.3
1,638,738	+		IAI47_07725	0.59	-1.6
1,638,739	-		IAI47_07725	0.59	-1.1
1,638,771	+		IAI47_07725	0.61	-0.9
1,638,771	+		IAI47_07725	0.61	+0.6
1,638,771	+		IAI47_07725	0.61	+2.9
1,638,771	+		IAI47_07725	0.61	-0.9
1,638,772	-		IAI47_07725	0.61	-0.1
1,638,795	+		IAI47_07725	0.63	-0.1
1,638,795	+		IAI47_07725	0.63	+5.1
1,638,807	+		IAI47_07725	0.63	+0.5
1,638,831	+		IAI47_07725	0.65	-0.6
1,638,831	+		IAI47_07725	0.65	+1.6
1,638,832	-		IAI47_07725	0.65	-0.3
1,638,854	+		IAI47_07725	0.67	-0.1
1,638,855	-		IAI47_07725	0.67	+0.8
1,638,855	-		IAI47_07725	0.67	-1.2
1,638,855	-		IAI47_07725	0.67	-0.1
1,638,873	+		IAI47_07725	0.68	-2.6
1,638,873	+		IAI47_07725	0.68	-0.3
1,638,873	+		IAI47_07725	0.68	-0.9
1,638,873	+		IAI47_07725	0.68	-1.2
1,638,873	+		IAI47_07725	0.68	+0.1
1,638,874	-		IAI47_07725	0.68	-0.9
1,638,874	-		IAI47_07725	0.68	-1.6
1,638,891	+		IAI47_07725	0.69	+2.0
1,638,906	+		IAI47_07725	0.70	+1.4
1,638,907	-		IAI47_07725	0.70	+1.9
1,638,954	+		IAI47_07725	0.73	-0.6
1,638,955	-		IAI47_07725	0.73	-1.7
1,639,049	+		IAI47_07725	0.79	+1.0
1,639,049	+		IAI47_07725	0.79	-0.8
1,639,050	-		IAI47_07725	0.79	-1.9
1,639,050	-		IAI47_07725	0.79	-0.7
1,639,062	+		IAI47_07725	0.80	+1.4
1,639,112	+		IAI47_07725	0.83	+0.6
1,639,112	+		IAI47_07725	0.83	+0.7
1,639,113	-		IAI47_07725	0.83	-1.8
1,639,113	-		IAI47_07725	0.83	+0.1
1,639,113	-		IAI47_07725	0.83	+1.6
1,639,114	+		IAI47_07725	0.83	-0.5
1,639,114	+		IAI47_07725	0.83	-0.6
1,639,114	+		IAI47_07725	0.83	-0.4
1,639,114	+		IAI47_07725	0.83	+0.4
1,639,115	-		IAI47_07725	0.83	-0.6
1,639,182	+		IAI47_07725	0.88	+3.1
1,639,194	+		IAI47_07725	0.89	+2.7
1,639,194	+		IAI47_07725	0.89	-2.4
1,639,195	-		IAI47_07725	0.89	-1.4
1,639,195	-		IAI47_07725	0.89	-3.5
1,639,204	-		IAI47_07725	0.89	+2.8
1,639,204	-		IAI47_07725	0.89	+0.1
1,639,216	+				+0.5
1,639,216	+				-0.0
1,639,286	+				+0.4
1,639,286	+				-0.1
1,639,287	-				-0.3
1,639,359	+				-1.6
1,639,359	+				+1.1
1,639,359	+				+2.4
1,639,359	+				-2.1
1,639,360	-				+2.6
1,639,360	-				+1.4
1,639,393	+				+0.4
1,639,393	+				+1.3
1,639,393	+				-0.6
1,639,393	+				-1.7
1,639,394	-				+1.7
1,639,394	-				-0.3
1,639,394	-				+0.4
1,639,394	-				-0.0
1,639,416	+				-0.9
1,639,416	+				+1.4
1,639,416	+				+0.4
1,639,416	+				-1.9
1,639,417	-				+1.9
1,639,417	-				-2.3
1,639,417	-				+1.6
1,639,437	-				+1.4
1,639,455	+				-0.1
1,639,455	+				-1.4
1,639,455	+				+0.0
1,639,456	-				-1.9
1,639,512	+				-0.0
1,639,513	-				+1.7
1,639,573	-		IAI47_07730	0.10	-0.9
1,639,584	-		IAI47_07730	0.12	+1.1
1,639,602	-		IAI47_07730	0.16	+0.6
1,639,618	+		IAI47_07730	0.19	-0.1
1,639,618	+		IAI47_07730	0.19	-0.9
1,639,619	-		IAI47_07730	0.19	-2.1
1,639,619	-		IAI47_07730	0.19	+0.0
1,639,619	-		IAI47_07730	0.19	-1.6
1,639,656	+		IAI47_07730	0.27	-0.4
1,639,656	+		IAI47_07730	0.27	+2.1
1,639,657	-		IAI47_07730	0.27	-0.9
1,639,686	+		IAI47_07730	0.33	+1.9
1,639,686	+		IAI47_07730	0.33	-1.1
1,639,687	-		IAI47_07730	0.33	-1.9
1,639,755	+		IAI47_07730	0.46	+1.4
1,639,764	-		IAI47_07730	0.48	-0.3
1,639,775	+		IAI47_07730	0.50	+2.3
1,639,775	+		IAI47_07730	0.50	-0.3
1,639,776	-		IAI47_07730	0.51	+0.9
1,639,776	-		IAI47_07730	0.51	+0.1
1,639,776	-		IAI47_07730	0.51	+0.0
1,639,776	-		IAI47_07730	0.51	-0.1
1,639,776	-		IAI47_07730	0.51	-0.1
1,639,776	-		IAI47_07730	0.51	-0.3
1,639,776	-		IAI47_07730	0.51	+0.7
1,639,790	+		IAI47_07730	0.53	-0.9
1,639,790	+		IAI47_07730	0.53	-0.1
1,639,790	+		IAI47_07730	0.53	-1.4
1,639,790	+		IAI47_07730	0.53	-0.6
1,639,791	-		IAI47_07730	0.54	-0.0
1,639,791	-		IAI47_07730	0.54	-2.0
1,639,791	-		IAI47_07730	0.54	-0.4
1,639,800	+		IAI47_07730	0.55	+0.8
1,639,800	+		IAI47_07730	0.55	-2.0
1,639,800	+		IAI47_07730	0.55	+0.6
1,639,821	+		IAI47_07730	0.60	-1.8
1,639,821	+		IAI47_07730	0.60	-1.0
1,639,822	-		IAI47_07730	0.60	-0.2
1,639,822	-		IAI47_07730	0.60	-1.1
1,639,855	+		IAI47_07730	0.66	-0.6
1,639,855	+		IAI47_07730	0.66	-1.8
1,639,856	-		IAI47_07730	0.66	-2.4
1,639,856	-		IAI47_07730	0.66	-1.0
1,639,856	-		IAI47_07730	0.66	-1.9
1,639,856	-		IAI47_07730	0.66	+1.2
1,639,867	+		IAI47_07730	0.69	+1.1
1,639,868	-		IAI47_07730	0.69	+1.7
1,639,868	-		IAI47_07730	0.69	+0.4
1,639,907	+		IAI47_07730	0.77	+2.6
1,639,938	+		IAI47_07730	0.83	-0.7
1,639,938	+		IAI47_07730	0.83	+1.0
1,639,938	+		IAI47_07730	0.83	-0.5
1,639,939	-		IAI47_07730	0.83	-0.9
1,639,942	+		IAI47_07730	0.84	-1.8
1,639,942	+		IAI47_07730	0.84	-0.9
1,639,943	-		IAI47_07730	0.84	+1.4
1,639,943	-		IAI47_07730	0.84	-0.1
1,639,943	-		IAI47_07730	0.84	+1.6
1,639,965	+		IAI47_07730	0.88	+0.9
1,639,966	-		IAI47_07730	0.88	+0.5
1,640,013	+				-2.1
1,640,013	+				-3.6
1,640,013	+				+0.9
1,640,014	-				-0.4
1,640,014	-				-1.1
1,640,014	-				-1.4
1,640,014	-				-0.1
1,640,017	+				-0.8
1,640,017	+				-0.6
1,640,017	+				+0.3
1,640,017	+				+1.1
1,640,017	+				+1.4
1,640,017	+				-1.3
1,640,017	+				+1.0
1,640,017	+				+0.2
1,640,017	+				+0.1
1,640,018	-				-1.4
1,640,018	-				-0.5
1,640,018	-				+0.9
1,640,018	-				-1.1
1,640,018	-				+1.1
1,640,018	-				+1.8
1,640,018	-				-1.9
1,640,038	+				+0.6
1,640,038	+				+0.4
1,640,038	+				+1.4
1,640,057	+				+0.5
1,640,095	+				+1.0
1,640,101	+				-0.1
1,640,101	+				-3.4
1,640,101	+				-1.4
1,640,101	+				+0.2
1,640,101	+				+2.0
1,640,102	-				-0.7
1,640,102	-				-1.0
1,640,102	-				+0.2
1,640,102	-				+0.7
1,640,109	-				+0.6
1,640,109	-				-0.6
1,640,109	-				-1.2
1,640,109	-				+1.2
1,640,147	+				-2.5
1,640,147	+				-0.7
1,640,147	+				+1.5
1,640,148	-				+1.9
1,640,148	-				+0.5
1,640,161	+				-2.5
1,640,161	+				+1.5
1,640,161	+				+2.2
1,640,161	+				+1.0
1,640,161	+				+1.5
1,640,162	-				-0.9
1,640,162	-				+1.6
1,640,162	-				-1.0
1,640,162	-				+1.3
1,640,162	-				+0.5
1,640,162	-				-0.2
1,640,165	+				-1.7
1,640,165	+				-1.9
1,640,166	-				+0.3
1,640,186	+				-0.1
1,640,186	+				-1.5
1,640,186	+				-0.4
1,640,266	-		IAI47_07735	0.17	+0.3
1,640,280	-		IAI47_07735	0.19	+0.0
1,640,280	-		IAI47_07735	0.19	-2.5
1,640,327	-		IAI47_07735	0.27	+0.1
1,640,387	+		IAI47_07735	0.36	+1.9
1,640,388	-		IAI47_07735	0.36	-0.2
1,640,388	-		IAI47_07735	0.36	+1.8
1,640,400	-		IAI47_07735	0.38	-0.3
1,640,413	+		IAI47_07735	0.40	-1.4
1,640,424	+		IAI47_07735	0.42	+1.5
1,640,424	+		IAI47_07735	0.42	-0.1
1,640,425	-		IAI47_07735	0.42	-0.2
1,640,425	-		IAI47_07735	0.42	+0.2
1,640,425	-		IAI47_07735	0.42	+0.4
1,640,425	-		IAI47_07735	0.42	-0.8
1,640,425	-		IAI47_07735	0.42	+0.9
1,640,454	-		IAI47_07735	0.47	-1.0
1,640,454	-		IAI47_07735	0.47	+1.6
1,640,509	+		IAI47_07735	0.55	+1.1
1,640,509	+		IAI47_07735	0.55	+3.3
1,640,509	+		IAI47_07735	0.55	+1.9
1,640,509	+		IAI47_07735	0.55	-1.7
1,640,510	-		IAI47_07735	0.56	+1.2
1,640,510	-		IAI47_07735	0.56	+0.1
1,640,510	-		IAI47_07735	0.56	-2.0
1,640,510	-		IAI47_07735	0.56	+1.0
1,640,510	-		IAI47_07735	0.56	+1.7
1,640,510	-		IAI47_07735	0.56	-0.5
1,640,519	-		IAI47_07735	0.57	+1.0
1,640,558	+		IAI47_07735	0.63	-0.2
1,640,558	+		IAI47_07735	0.63	-0.1
1,640,558	+		IAI47_07735	0.63	+0.8
1,640,558	+		IAI47_07735	0.63	+0.8
1,640,559	-		IAI47_07735	0.63	+3.1
1,640,559	-		IAI47_07735	0.63	+2.2
1,640,580	+		IAI47_07735	0.67	-1.9
1,640,581	-		IAI47_07735	0.67	+1.8
1,640,632	+		IAI47_07735	0.75	+0.6
1,640,633	-		IAI47_07735	0.75	+1.3
1,640,633	-		IAI47_07735	0.75	+0.0
1,640,677	+		IAI47_07735	0.82	-3.4
1,640,677	+		IAI47_07735	0.82	-2.0
1,640,678	-		IAI47_07735	0.82	+1.2
1,640,678	-		IAI47_07735	0.82	+0.5
1,640,678	-		IAI47_07735	0.82	+2.0
1,640,678	-		IAI47_07735	0.82	-1.0
1,640,678	-		IAI47_07735	0.82	+0.6
1,640,680	+		IAI47_07735	0.83	+1.6
1,640,681	-		IAI47_07735	0.83	+0.1
1,640,681	-		IAI47_07735	0.83	-0.9
1,640,681	-		IAI47_07735	0.83	+0.7
1,640,685	-		IAI47_07735	0.83	-3.1
1,640,685	-		IAI47_07735	0.83	+0.7
1,640,696	+		IAI47_07735	0.85	+0.5
1,640,785	+				+0.7
1,640,786	-				+0.6
1,640,786	-				+0.2
1,640,789	+				-0.1
1,640,789	+				-0.5
1,640,789	+				+2.3
1,640,789	+				-0.5
1,640,790	-				-0.7
1,640,801	+				+0.4
1,640,814	-				+0.1
1,640,829	-				+0.9
1,640,829	-				-0.1
1,640,835	+				-0.7
1,640,867	+				+0.5
1,640,867	+				-0.4
1,640,868	-				-0.9
1,640,878	-				+0.4
1,640,884	-				-1.0
1,640,929	+				+3.9
1,640,929	+				+0.2
1,640,941	-				-2.0
1,640,948	-				-1.2
1,640,983	-				-1.4
1,640,991	+				-2.1