Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04690 and IAI47_04695 are separated by 715 nucleotides
IAI47_04690: IAI47_04690 - hypothetical protein, at 988,921 to 989,565
_04690
IAI47_04695: IAI47_04695 - hypothetical protein, at 990,281 to 990,745
_04695
Position (kb) 990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 989.298 kb on + strand, within IAI47_04690 at 989.299 kb on - strand, within IAI47_04690 at 989.358 kb on - strand, within IAI47_04690 at 989.414 kb on - strand, within IAI47_04690 at 989.449 kb on + strand, within IAI47_04690 at 989.450 kb on - strand, within IAI47_04690 at 989.489 kb on - strand, within IAI47_04690 at 989.503 kb on - strand at 989.507 kb on + strand at 989.507 kb on + strand at 989.507 kb on + strand at 989.507 kb on + strand at 989.507 kb on + strand at 989.507 kb on + strand at 989.515 kb on - strand at 989.553 kb on + strand at 989.571 kb on + strand at 989.571 kb on + strand at 989.575 kb on + strand at 989.576 kb on - strand at 989.578 kb on - strand at 989.588 kb on - strand at 989.588 kb on - strand at 989.588 kb on - strand at 989.588 kb on - strand at 989.650 kb on - strand at 989.698 kb on - strand at 989.722 kb on - strand at 989.722 kb on - strand at 989.752 kb on - strand at 989.754 kb on + strand at 989.755 kb on - strand at 989.770 kb on + strand at 989.775 kb on + strand at 989.784 kb on - strand at 989.801 kb on + strand at 989.801 kb on + strand at 989.804 kb on + strand at 989.804 kb on + strand at 989.804 kb on + strand at 989.805 kb on - strand at 989.827 kb on + strand at 989.837 kb on + strand at 989.901 kb on + strand at 989.901 kb on + strand at 989.925 kb on + strand at 989.935 kb on + strand at 989.936 kb on - strand at 989.936 kb on - strand at 989.986 kb on + strand at 989.987 kb on - strand at 989.989 kb on - strand at 989.989 kb on - strand at 989.989 kb on - strand at 990.015 kb on + strand at 990.027 kb on + strand at 990.028 kb on - strand at 990.065 kb on + strand at 990.065 kb on + strand at 990.065 kb on + strand at 990.065 kb on + strand at 990.065 kb on + strand at 990.073 kb on - strand at 990.153 kb on - strand at 990.242 kb on + strand at 990.243 kb on - strand at 990.245 kb on - strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.246 kb on + strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.247 kb on - strand at 990.255 kb on - strand at 990.270 kb on + strand at 990.282 kb on + strand at 990.312 kb on - strand at 990.312 kb on - strand at 990.403 kb on + strand, within IAI47_04695 at 990.404 kb on - strand, within IAI47_04695 at 990.404 kb on - strand, within IAI47_04695 at 990.518 kb on - strand, within IAI47_04695 at 990.518 kb on - strand, within IAI47_04695 at 990.541 kb on + strand, within IAI47_04695 at 990.547 kb on + strand, within IAI47_04695 at 990.548 kb on - strand, within IAI47_04695 at 990.591 kb on + strand, within IAI47_04695 at 990.591 kb on + strand, within IAI47_04695 at 990.592 kb on - strand, within IAI47_04695 at 990.592 kb on - strand, within IAI47_04695 at 990.638 kb on + strand, within IAI47_04695 at 990.638 kb on + strand, within IAI47_04695 at 990.641 kb on - strand, within IAI47_04695 at 990.641 kb on - strand, within IAI47_04695 at 990.643 kb on + strand, within IAI47_04695 at 990.643 kb on + strand, within IAI47_04695 at 990.643 kb on + strand, within IAI47_04695 at 990.644 kb on - strand, within IAI47_04695 at 990.646 kb on + strand, within IAI47_04695 at 990.672 kb on - strand, within IAI47_04695 at 990.842 kb on + strand at 990.864 kb on - strand at 990.864 kb on - strand at 990.864 kb on - strand at 990.988 kb on - strand at 990.989 kb on + strand at 990.990 kb on - strand at 990.990 kb on - strand at 990.998 kb on + strand at 991.016 kb on - strand at 991.031 kb on + strand at 991.080 kb on - strand at 991.094 kb on + strand at 991.101 kb on + strand at 991.104 kb on + strand at 991.105 kb on - strand at 991.107 kb on + strand at 991.107 kb on + strand at 991.127 kb on + strand at 991.171 kb on + strand at 991.171 kb on + strand at 991.172 kb on - strand at 991.172 kb on - strand at 991.172 kb on - strand at 991.177 kb on + strand at 991.177 kb on + strand at 991.177 kb on + strand at 991.178 kb on - strand at 991.178 kb on - strand at 991.178 kb on - strand at 991.181 kb on + strand at 991.181 kb on + strand at 991.181 kb on + strand at 991.181 kb on + strand at 991.182 kb on - strand at 991.182 kb on - strand at 991.182 kb on - strand at 991.182 kb on - strand at 991.185 kb on - strand at 991.215 kb on + strand at 991.215 kb on + strand at 991.215 kb on + strand at 991.216 kb on - strand at 991.216 kb on - strand at 991.216 kb on - strand at 991.216 kb on - strand at 991.216 kb on - strand at 991.216 kb on - strand at 991.216 kb on - strand at 991.216 kb on - strand at 991.219 kb on + strand at 991.219 kb on + strand at 991.219 kb on + strand at 991.219 kb on + strand at 991.219 kb on + strand at 991.219 kb on + strand at 991.219 kb on + strand at 991.219 kb on + strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.220 kb on - strand at 991.224 kb on + strand at 991.224 kb on + strand at 991.225 kb on - strand at 991.225 kb on - strand at 991.225 kb on - strand at 991.235 kb on + strand at 991.236 kb on - strand at 991.259 kb on + strand at 991.289 kb on + strand at 991.289 kb on + strand at 991.289 kb on + strand at 991.290 kb on - strand at 991.301 kb on + strand at 991.302 kb on - strand at 991.302 kb on - strand at 991.302 kb on - strand at 991.307 kb on + strand at 991.307 kb on + strand at 991.307 kb on + strand at 991.307 kb on + strand at 991.308 kb on - strand at 991.308 kb on - strand at 991.308 kb on - strand at 991.308 kb on - strand at 991.308 kb on - strand at 991.369 kb on + strand at 991.369 kb on + strand at 991.369 kb on + strand at 991.369 kb on + strand at 991.370 kb on - strand at 991.374 kb on + strand at 991.374 kb on + strand at 991.374 kb on + strand at 991.374 kb on + strand at 991.374 kb on + strand at 991.374 kb on + strand at 991.374 kb on + strand at 991.375 kb on - strand at 991.375 kb on - strand at 991.375 kb on - strand at 991.397 kb on - strand at 991.397 kb on - strand at 991.418 kb on - strand at 991.434 kb on - strand at 991.434 kb on - strand at 991.434 kb on - strand at 991.434 kb on - strand at 991.472 kb on - strand at 991.472 kb on - strand at 991.472 kb on - strand at 991.472 kb on - strand at 991.472 kb on - strand at 991.475 kb on + strand at 991.475 kb on + strand at 991.475 kb on + strand at 991.476 kb on - strand at 991.476 kb on - strand at 991.523 kb on + strand at 991.523 kb on + strand at 991.533 kb on - strand at 991.533 kb on - strand at 991.552 kb on - strand at 991.552 kb on - strand at 991.564 kb on + strand at 991.564 kb on + strand at 991.565 kb on - strand at 991.565 kb on - strand at 991.594 kb on + strand at 991.594 kb on + strand at 991.610 kb on + strand at 991.611 kb on - strand at 991.611 kb on - strand at 991.627 kb on - strand at 991.627 kb on - strand at 991.629 kb on + strand at 991.631 kb on + strand at 991.632 kb on - strand at 991.637 kb on + strand at 991.682 kb on - strand at 991.682 kb on - strand at 991.687 kb on + strand at 991.687 kb on + strand at 991.715 kb on - strand at 991.717 kb on + strand at 991.727 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 989,298 + IAI47_04690 0.58 -0.7 989,299 - IAI47_04690 0.59 +0.9 989,358 - IAI47_04690 0.68 +2.9 989,414 - IAI47_04690 0.76 +1.8 989,449 + IAI47_04690 0.82 -2.7 989,450 - IAI47_04690 0.82 +0.0 989,489 - IAI47_04690 0.88 +0.8 989,503 - +2.6 989,507 + +0.6 989,507 + +2.8 989,507 + -0.4 989,507 + +0.6 989,507 + +1.0 989,507 + -0.7 989,515 - +3.9 989,553 + +0.6 989,571 + +0.0 989,571 + +1.9 989,575 + +0.6 989,576 - -1.2 989,578 - -0.6 989,588 - -1.0 989,588 - -1.4 989,588 - -1.2 989,588 - +3.6 989,650 - -1.1 989,698 - +1.1 989,722 - +1.9 989,722 - -1.4 989,752 - -0.3 989,754 + -0.3 989,755 - -0.1 989,770 + +1.5 989,775 + -0.4 989,784 - -1.3 989,801 + +0.5 989,801 + +0.7 989,804 + +2.6 989,804 + -1.4 989,804 + -2.9 989,805 - -0.9 989,827 + -0.6 989,837 + -0.4 989,901 + +1.1 989,901 + +0.2 989,925 + +1.2 989,935 + -1.6 989,936 - -1.3 989,936 - -0.3 989,986 + -0.7 989,987 - -0.2 989,989 - +0.2 989,989 - -2.4 989,989 - -1.3 990,015 + +1.4 990,027 + +0.9 990,028 - -1.4 990,065 + -0.7 990,065 + +0.3 990,065 + +3.8 990,065 + -0.7 990,065 + +0.6 990,073 - -1.9 990,153 - -1.0 990,242 + +1.7 990,243 - -1.3 990,245 - +0.2 990,246 + -0.3 990,246 + +0.3 990,246 + +0.5 990,246 + -2.0 990,246 + -3.5 990,246 + +1.6 990,246 + +0.0 990,246 + +0.0 990,246 + +0.2 990,247 - -2.2 990,247 - +0.9 990,247 - +0.0 990,247 - -3.1 990,247 - +1.1 990,247 - +0.0 990,247 - +0.7 990,255 - +1.4 990,270 + -0.8 990,282 + -0.7 990,312 - -3.0 990,312 - +2.0 990,403 + IAI47_04695 0.26 +0.0 990,404 - IAI47_04695 0.26 +0.0 990,404 - IAI47_04695 0.26 +1.6 990,518 - IAI47_04695 0.51 +0.4 990,518 - IAI47_04695 0.51 +0.2 990,541 + IAI47_04695 0.56 -2.9 990,547 + IAI47_04695 0.57 +0.9 990,548 - IAI47_04695 0.57 -2.0 990,591 + IAI47_04695 0.67 -0.7 990,591 + IAI47_04695 0.67 +0.4 990,592 - IAI47_04695 0.67 -2.1 990,592 - IAI47_04695 0.67 +0.3 990,638 + IAI47_04695 0.77 -0.8 990,638 + IAI47_04695 0.77 +0.9 990,641 - IAI47_04695 0.77 -2.0 990,641 - IAI47_04695 0.77 -1.8 990,643 + IAI47_04695 0.78 +1.6 990,643 + IAI47_04695 0.78 -2.0 990,643 + IAI47_04695 0.78 -1.0 990,644 - IAI47_04695 0.78 -0.8 990,646 + IAI47_04695 0.78 -1.5 990,672 - IAI47_04695 0.84 +0.2 990,842 + -1.2 990,864 - -2.5 990,864 - +1.8 990,864 - +0.9 990,988 - -0.3 990,989 + +0.9 990,990 - -1.0 990,990 - +0.1 990,998 + +0.3 991,016 - -0.8 991,031 + -2.3 991,080 - -2.7 991,094 + +1.4 991,101 + +1.6 991,104 + -3.6 991,105 - -0.9 991,107 + +0.4 991,107 + -0.7 991,127 + -0.8 991,171 + +1.6 991,171 + -0.6 991,172 - +0.2 991,172 - +1.0 991,172 - -1.6 991,177 + +0.3 991,177 + +0.9 991,177 + +1.9 991,178 - +0.8 991,178 - -0.1 991,178 - -0.4 991,181 + +0.3 991,181 + +0.2 991,181 + -0.6 991,181 + -0.8 991,182 - -2.9 991,182 - +2.6 991,182 - +0.5 991,182 - +0.3 991,185 - -0.8 991,215 + -0.1 991,215 + +2.1 991,215 + +1.6 991,216 - +0.4 991,216 - -0.1 991,216 - -1.0 991,216 - +0.9 991,216 - +0.4 991,216 - +1.6 991,216 - +0.5 991,216 - -0.9 991,219 + +1.4 991,219 + +0.8 991,219 + +1.2 991,219 + +0.1 991,219 + -0.3 991,219 + +0.9 991,219 + +0.5 991,219 + +0.8 991,220 - +0.0 991,220 - +2.4 991,220 - +1.0 991,220 - +2.0 991,220 - -0.2 991,220 - -1.7 991,220 - -1.1 991,220 - -0.4 991,220 - +2.2 991,220 - +1.7 991,220 - +0.4 991,220 - -2.8 991,220 - -0.6 991,224 + +1.8 991,224 + -2.1 991,225 - -0.4 991,225 - -0.4 991,225 - +1.6 991,235 + -1.1 991,236 - -0.2 991,259 + +2.0 991,289 + +1.4 991,289 + -1.6 991,289 + -0.8 991,290 - -1.6 991,301 + -0.3 991,302 - -2.3 991,302 - -0.5 991,302 - +1.1 991,307 + -1.0 991,307 + +0.6 991,307 + +1.6 991,307 + +0.4 991,308 - +0.9 991,308 - +0.4 991,308 - +0.4 991,308 - -0.4 991,308 - +1.4 991,369 + -1.8 991,369 + +0.2 991,369 + +0.9 991,369 + +0.4 991,370 - +0.6 991,374 + +1.1 991,374 + -2.5 991,374 + -1.8 991,374 + +1.9 991,374 + +0.3 991,374 + -0.4 991,374 + +1.0 991,375 - +0.6 991,375 - +1.0 991,375 - -2.1 991,397 - -1.5 991,397 - -0.4 991,418 - +1.4 991,434 - +3.2 991,434 - -0.6 991,434 - -0.6 991,434 - -3.2 991,472 - -0.3 991,472 - +1.7 991,472 - -1.1 991,472 - +0.6 991,472 - +0.9 991,475 + -1.0 991,475 + +3.2 991,475 + +1.2 991,476 - -2.1 991,476 - +2.7 991,523 + +0.4 991,523 + -1.4 991,533 - -0.5 991,533 - +0.3 991,552 - +1.5 991,552 - -1.0 991,564 + -2.7 991,564 + -1.8 991,565 - -0.3 991,565 - +0.3 991,594 + +2.4 991,594 + -0.4 991,610 + -0.7 991,611 - -0.4 991,611 - +0.5 991,627 - -0.7 991,627 - -1.5 991,629 + +0.7 991,631 + +0.9 991,632 - +1.6 991,637 + +0.6 991,682 - -0.6 991,682 - +1.7 991,687 + -0.6 991,687 + +0.4 991,715 - -0.5 991,717 + -0.2 991,727 + -2.9
Or see this region's nucleotide sequence