Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03005 and IAI47_03010 overlap by 4 nucleotides IAI47_03010 and IAI47_03015 are separated by 170 nucleotides IAI47_03015 and IAI47_03020 are separated by 723 nucleotides IAI47_03020 and IAI47_03025 are separated by 104 nucleotides
IAI47_03005: IAI47_03005 - hypothetical protein, at 623,156 to 623,611
_03005
IAI47_03010: IAI47_03010 - DUF1493 family protein, at 623,608 to 623,931
_03010
IAI47_03015: IAI47_03015 - hypothetical protein, at 624,102 to 625,076
_03015
IAI47_03020: IAI47_03020 - hypothetical protein, at 625,800 to 625,958
_03020
IAI47_03025: IAI47_03025 - hypothetical protein, at 626,063 to 626,638
_03025
Position (kb) 624
625
626 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 623.112 kb on + strand at 623.112 kb on + strand at 623.113 kb on - strand at 623.118 kb on - strand at 623.155 kb on + strand at 623.155 kb on + strand at 623.155 kb on + strand at 623.161 kb on + strand at 623.161 kb on + strand at 623.161 kb on + strand at 623.161 kb on + strand at 623.162 kb on - strand at 623.162 kb on - strand at 623.162 kb on - strand at 623.182 kb on + strand at 623.182 kb on + strand at 623.182 kb on + strand at 623.183 kb on - strand at 623.186 kb on + strand at 623.186 kb on + strand at 623.187 kb on - strand at 623.187 kb on - strand at 623.187 kb on - strand at 623.187 kb on - strand at 623.187 kb on - strand at 623.189 kb on + strand at 623.206 kb on + strand, within IAI47_03005 at 623.238 kb on + strand, within IAI47_03005 at 623.239 kb on - strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.242 kb on + strand, within IAI47_03005 at 623.243 kb on - strand, within IAI47_03005 at 623.243 kb on - strand, within IAI47_03005 at 623.243 kb on - strand, within IAI47_03005 at 623.243 kb on - strand, within IAI47_03005 at 623.243 kb on - strand, within IAI47_03005 at 623.243 kb on - strand, within IAI47_03005 at 623.266 kb on - strand, within IAI47_03005 at 623.266 kb on - strand, within IAI47_03005 at 623.278 kb on + strand, within IAI47_03005 at 623.298 kb on + strand, within IAI47_03005 at 623.314 kb on + strand, within IAI47_03005 at 623.314 kb on + strand, within IAI47_03005 at 623.314 kb on + strand, within IAI47_03005 at 623.314 kb on + strand, within IAI47_03005 at 623.315 kb on - strand, within IAI47_03005 at 623.315 kb on - strand, within IAI47_03005 at 623.315 kb on - strand, within IAI47_03005 at 623.315 kb on - strand, within IAI47_03005 at 623.315 kb on - strand, within IAI47_03005 at 623.315 kb on - strand, within IAI47_03005 at 623.318 kb on - strand, within IAI47_03005 at 623.318 kb on - strand, within IAI47_03005 at 623.339 kb on - strand, within IAI47_03005 at 623.356 kb on + strand, within IAI47_03005 at 623.357 kb on - strand, within IAI47_03005 at 623.357 kb on - strand, within IAI47_03005 at 623.396 kb on + strand, within IAI47_03005 at 623.396 kb on + strand, within IAI47_03005 at 623.476 kb on + strand, within IAI47_03005 at 623.476 kb on + strand, within IAI47_03005 at 623.476 kb on + strand, within IAI47_03005 at 623.476 kb on + strand, within IAI47_03005 at 623.477 kb on - strand, within IAI47_03005 at 623.477 kb on - strand, within IAI47_03005 at 623.493 kb on + strand, within IAI47_03005 at 623.494 kb on - strand, within IAI47_03005 at 623.494 kb on - strand, within IAI47_03005 at 623.573 kb on + strand at 623.573 kb on + strand at 623.573 kb on + strand at 623.574 kb on - strand at 623.574 kb on - strand at 623.600 kb on - strand at 623.613 kb on + strand at 623.616 kb on + strand at 623.616 kb on + strand at 623.616 kb on + strand at 623.616 kb on + strand at 623.616 kb on + strand at 623.616 kb on + strand at 623.949 kb on + strand at 623.950 kb on - strand at 623.982 kb on + strand at 623.982 kb on + strand at 623.982 kb on + strand at 623.982 kb on + strand at 623.983 kb on - strand at 623.987 kb on + strand at 623.987 kb on + strand at 623.988 kb on - strand at 623.988 kb on - strand at 623.988 kb on - strand at 623.988 kb on - strand at 623.988 kb on - strand at 623.988 kb on - strand at 623.990 kb on + strand at 623.990 kb on + strand at 623.991 kb on - strand at 623.991 kb on - strand at 623.991 kb on - strand at 623.997 kb on + strand at 623.998 kb on - strand at 623.998 kb on - strand at 623.998 kb on - strand at 623.998 kb on - strand at 623.998 kb on - strand at 624.007 kb on - strand at 624.007 kb on - strand at 624.041 kb on + strand at 624.041 kb on + strand at 624.041 kb on + strand at 624.042 kb on - strand at 624.042 kb on - strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.049 kb on + strand at 624.050 kb on - strand at 624.050 kb on - strand at 624.050 kb on - strand at 624.050 kb on - strand at 624.050 kb on - strand at 624.050 kb on - strand at 624.050 kb on - strand at 624.051 kb on + strand at 624.052 kb on - strand at 624.052 kb on - strand at 624.052 kb on - strand at 624.052 kb on - strand at 624.059 kb on - strand at 624.062 kb on + strand at 624.062 kb on + strand at 624.062 kb on + strand at 624.063 kb on - strand at 624.118 kb on + strand at 624.119 kb on - strand at 624.174 kb on - strand at 624.209 kb on + strand, within IAI47_03015 at 624.210 kb on - strand, within IAI47_03015 at 624.246 kb on + strand, within IAI47_03015 at 624.246 kb on + strand, within IAI47_03015 at 624.247 kb on - strand, within IAI47_03015 at 624.505 kb on + strand, within IAI47_03015 at 624.506 kb on - strand, within IAI47_03015 at 624.587 kb on + strand, within IAI47_03015 at 624.700 kb on + strand, within IAI47_03015 at 624.701 kb on - strand, within IAI47_03015 at 624.701 kb on - strand, within IAI47_03015 at 624.714 kb on + strand, within IAI47_03015 at 624.714 kb on + strand, within IAI47_03015 at 624.714 kb on + strand, within IAI47_03015 at 624.715 kb on - strand, within IAI47_03015 at 624.715 kb on - strand, within IAI47_03015 at 624.715 kb on - strand, within IAI47_03015 at 624.715 kb on - strand, within IAI47_03015 at 624.715 kb on - strand, within IAI47_03015 at 624.746 kb on + strand, within IAI47_03015 at 624.746 kb on + strand, within IAI47_03015 at 624.746 kb on + strand, within IAI47_03015 at 624.746 kb on + strand, within IAI47_03015 at 624.747 kb on - strand, within IAI47_03015 at 624.747 kb on - strand, within IAI47_03015 at 624.762 kb on - strand, within IAI47_03015 at 624.794 kb on - strand, within IAI47_03015 at 624.812 kb on - strand, within IAI47_03015 at 624.903 kb on - strand, within IAI47_03015 at 624.926 kb on + strand, within IAI47_03015 at 624.926 kb on + strand, within IAI47_03015 at 624.927 kb on - strand, within IAI47_03015 at 625.053 kb on + strand at 625.053 kb on + strand at 625.054 kb on - strand at 625.074 kb on + strand at 625.074 kb on + strand at 625.074 kb on + strand at 625.074 kb on + strand at 625.074 kb on + strand at 625.075 kb on - strand at 625.075 kb on - strand at 625.075 kb on - strand at 625.075 kb on - strand at 625.075 kb on - strand at 625.087 kb on + strand at 625.087 kb on + strand at 625.088 kb on - strand at 625.088 kb on - strand at 625.112 kb on + strand at 625.185 kb on + strand at 625.185 kb on + strand at 625.185 kb on + strand at 625.186 kb on - strand at 625.238 kb on + strand at 625.238 kb on + strand at 625.239 kb on - strand at 625.266 kb on - strand at 625.266 kb on - strand at 625.321 kb on + strand at 625.360 kb on + strand at 625.422 kb on + strand at 625.422 kb on + strand at 625.422 kb on + strand at 625.423 kb on - strand at 625.510 kb on + strand at 625.510 kb on + strand at 625.510 kb on + strand at 625.510 kb on + strand at 625.510 kb on + strand at 625.510 kb on + strand at 625.511 kb on - strand at 625.511 kb on - strand at 625.610 kb on + strand at 625.610 kb on + strand at 625.610 kb on + strand at 625.611 kb on - strand at 625.611 kb on - strand at 625.611 kb on - strand at 625.613 kb on + strand at 625.613 kb on + strand at 625.614 kb on - strand at 625.616 kb on - strand at 625.616 kb on - strand at 625.616 kb on - strand at 625.623 kb on - strand at 625.623 kb on - strand at 625.623 kb on - strand at 625.629 kb on - strand at 625.680 kb on + strand at 625.680 kb on + strand at 625.680 kb on + strand at 625.681 kb on - strand at 625.681 kb on - strand at 625.689 kb on - strand at 625.722 kb on + strand at 625.722 kb on + strand at 625.723 kb on - strand at 625.723 kb on - strand at 625.747 kb on + strand at 625.747 kb on + strand at 625.747 kb on + strand at 625.747 kb on + strand at 625.747 kb on + strand at 625.748 kb on - strand at 625.748 kb on - strand at 625.755 kb on + strand at 625.755 kb on + strand at 625.755 kb on + strand at 625.755 kb on + strand at 625.755 kb on + strand at 625.755 kb on + strand at 625.755 kb on + strand at 625.755 kb on + strand at 625.756 kb on - strand at 625.756 kb on - strand at 625.756 kb on - strand at 625.756 kb on - strand at 625.756 kb on - strand at 625.756 kb on - strand at 625.756 kb on - strand at 625.756 kb on - strand at 625.756 kb on - strand at 625.764 kb on + strand at 625.765 kb on - strand at 625.801 kb on + strand at 625.801 kb on + strand at 625.801 kb on + strand at 625.802 kb on - strand at 625.802 kb on - strand at 625.812 kb on - strand at 625.993 kb on - strand at 625.997 kb on - strand at 625.997 kb on - strand at 625.997 kb on - strand at 625.997 kb on - strand at 625.997 kb on - strand at 625.997 kb on - strand at 626.006 kb on - strand at 626.016 kb on - strand at 626.016 kb on - strand at 626.016 kb on - strand at 626.016 kb on - strand at 626.022 kb on - strand at 626.022 kb on - strand at 626.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 623,112 + +1.2 623,112 + -0.8 623,113 - -2.2 623,118 - -0.7 623,155 + +1.7 623,155 + -1.0 623,155 + +1.1 623,161 + +0.2 623,161 + +0.5 623,161 + -1.9 623,161 + -0.1 623,162 - +1.4 623,162 - +1.3 623,162 - -0.6 623,182 + -0.1 623,182 + +1.7 623,182 + -0.1 623,183 - -1.9 623,186 + -1.4 623,186 + +0.0 623,187 - +0.2 623,187 - +0.8 623,187 - -0.1 623,187 - +0.4 623,187 - +2.6 623,189 + -2.2 623,206 + IAI47_03005 0.11 -0.9 623,238 + IAI47_03005 0.18 -1.7 623,239 - IAI47_03005 0.18 -0.3 623,242 + IAI47_03005 0.19 +0.0 623,242 + IAI47_03005 0.19 +0.2 623,242 + IAI47_03005 0.19 -1.6 623,242 + IAI47_03005 0.19 +0.4 623,242 + IAI47_03005 0.19 +0.1 623,242 + IAI47_03005 0.19 -0.2 623,242 + IAI47_03005 0.19 +0.1 623,242 + IAI47_03005 0.19 -0.1 623,242 + IAI47_03005 0.19 -1.4 623,242 + IAI47_03005 0.19 +0.1 623,242 + IAI47_03005 0.19 -0.7 623,242 + IAI47_03005 0.19 -1.5 623,243 - IAI47_03005 0.19 +3.2 623,243 - IAI47_03005 0.19 +0.0 623,243 - IAI47_03005 0.19 -1.4 623,243 - IAI47_03005 0.19 +1.9 623,243 - IAI47_03005 0.19 +0.8 623,243 - IAI47_03005 0.19 -0.5 623,266 - IAI47_03005 0.24 +1.4 623,266 - IAI47_03005 0.24 -2.8 623,278 + IAI47_03005 0.27 +0.3 623,298 + IAI47_03005 0.31 +0.2 623,314 + IAI47_03005 0.35 +0.3 623,314 + IAI47_03005 0.35 +1.1 623,314 + IAI47_03005 0.35 +2.3 623,314 + IAI47_03005 0.35 +2.1 623,315 - IAI47_03005 0.35 +0.3 623,315 - IAI47_03005 0.35 +2.3 623,315 - IAI47_03005 0.35 +0.2 623,315 - IAI47_03005 0.35 -1.4 623,315 - IAI47_03005 0.35 +3.1 623,315 - IAI47_03005 0.35 -0.7 623,318 - IAI47_03005 0.36 -0.1 623,318 - IAI47_03005 0.36 +1.1 623,339 - IAI47_03005 0.40 +0.1 623,356 + IAI47_03005 0.44 -1.9 623,357 - IAI47_03005 0.44 -0.6 623,357 - IAI47_03005 0.44 -3.6 623,396 + IAI47_03005 0.53 -0.3 623,396 + IAI47_03005 0.53 -1.4 623,476 + IAI47_03005 0.70 +2.3 623,476 + IAI47_03005 0.70 +1.2 623,476 + IAI47_03005 0.70 +0.3 623,476 + IAI47_03005 0.70 +1.0 623,477 - IAI47_03005 0.70 +1.0 623,477 - IAI47_03005 0.70 -2.4 623,493 + IAI47_03005 0.74 +1.1 623,494 - IAI47_03005 0.74 +1.8 623,494 - IAI47_03005 0.74 +1.0 623,573 + +0.6 623,573 + +1.5 623,573 + +0.9 623,574 - -1.8 623,574 - -2.1 623,600 - +0.4 623,613 + +0.3 623,616 + -0.1 623,616 + +0.2 623,616 + +1.5 623,616 + +0.3 623,616 + +0.1 623,616 + +1.2 623,949 + +0.5 623,950 - +1.5 623,982 + -1.7 623,982 + -1.9 623,982 + -1.0 623,982 + -0.0 623,983 - -2.2 623,987 + -0.9 623,987 + -1.3 623,988 - +0.4 623,988 - -0.7 623,988 - +0.8 623,988 - +1.5 623,988 - -1.2 623,988 - +0.5 623,990 + -1.5 623,990 + +0.7 623,991 - +0.9 623,991 - -1.2 623,991 - +0.8 623,997 + -2.9 623,998 - +2.7 623,998 - -1.2 623,998 - +2.8 623,998 - -0.4 623,998 - +1.5 624,007 - +0.4 624,007 - +0.4 624,041 + -2.4 624,041 + +0.8 624,041 + -1.0 624,042 - +3.6 624,042 - +0.5 624,049 + +1.8 624,049 + +1.8 624,049 + -1.9 624,049 + -3.2 624,049 + +1.9 624,049 + +0.4 624,049 + -0.6 624,049 + -0.6 624,049 + +1.2 624,049 + +2.8 624,049 + -2.7 624,049 + -1.2 624,049 + -4.3 624,049 + -1.6 624,049 + -1.4 624,050 - +0.8 624,050 - +1.1 624,050 - -1.9 624,050 - -1.9 624,050 - +0.2 624,050 - +1.3 624,050 - +0.1 624,051 + +0.1 624,052 - +0.2 624,052 - -1.8 624,052 - -3.2 624,052 - +0.6 624,059 - -0.4 624,062 + -0.3 624,062 + -1.9 624,062 + +0.3 624,063 - -1.2 624,118 + -0.6 624,119 - -0.8 624,174 - +1.4 624,209 + IAI47_03015 0.11 -1.6 624,210 - IAI47_03015 0.11 -0.1 624,246 + IAI47_03015 0.15 -1.9 624,246 + IAI47_03015 0.15 -2.9 624,247 - IAI47_03015 0.15 -1.1 624,505 + IAI47_03015 0.41 -0.4 624,506 - IAI47_03015 0.41 +0.4 624,587 + IAI47_03015 0.50 -1.2 624,700 + IAI47_03015 0.61 -1.3 624,701 - IAI47_03015 0.61 +0.7 624,701 - IAI47_03015 0.61 -0.8 624,714 + IAI47_03015 0.63 -1.1 624,714 + IAI47_03015 0.63 +0.5 624,714 + IAI47_03015 0.63 +0.6 624,715 - IAI47_03015 0.63 -1.1 624,715 - IAI47_03015 0.63 -1.2 624,715 - IAI47_03015 0.63 -0.7 624,715 - IAI47_03015 0.63 -0.4 624,715 - IAI47_03015 0.63 -1.1 624,746 + IAI47_03015 0.66 -0.1 624,746 + IAI47_03015 0.66 -0.6 624,746 + IAI47_03015 0.66 +0.8 624,746 + IAI47_03015 0.66 -0.8 624,747 - IAI47_03015 0.66 -0.7 624,747 - IAI47_03015 0.66 -0.3 624,762 - IAI47_03015 0.68 +3.0 624,794 - IAI47_03015 0.71 -1.3 624,812 - IAI47_03015 0.73 -1.1 624,903 - IAI47_03015 0.82 +2.2 624,926 + IAI47_03015 0.85 +0.2 624,926 + IAI47_03015 0.85 +0.4 624,927 - IAI47_03015 0.85 -1.5 625,053 + +0.4 625,053 + -0.2 625,054 - +0.2 625,074 + +0.0 625,074 + +0.3 625,074 + +0.3 625,074 + +2.1 625,074 + +2.7 625,075 - +0.1 625,075 - +3.0 625,075 - -1.2 625,075 - +0.1 625,075 - -0.1 625,087 + -0.1 625,087 + -2.9 625,088 - -2.2 625,088 - -1.2 625,112 + -2.1 625,185 + -0.0 625,185 + +0.9 625,185 + +2.3 625,186 - -0.4 625,238 + +4.2 625,238 + -1.4 625,239 - -1.1 625,266 - +1.7 625,266 - -0.6 625,321 + -1.9 625,360 + +1.1 625,422 + +0.4 625,422 + +0.4 625,422 + -1.6 625,423 - +1.0 625,510 + -0.7 625,510 + -1.9 625,510 + +1.2 625,510 + +1.8 625,510 + +0.1 625,510 + +1.6 625,511 - -0.2 625,511 - -1.3 625,610 + +1.9 625,610 + -1.7 625,610 + -2.7 625,611 - +0.5 625,611 - +1.4 625,611 - +0.6 625,613 + +0.3 625,613 + +0.2 625,614 - -1.0 625,616 - -0.9 625,616 - +0.9 625,616 - +0.2 625,623 - -2.3 625,623 - -1.8 625,623 - +0.8 625,629 - +0.1 625,680 + +1.7 625,680 + -3.0 625,680 + -2.9 625,681 - -0.1 625,681 - +0.2 625,689 - -0.9 625,722 + -0.6 625,722 + -0.7 625,723 - +0.3 625,723 - +0.4 625,747 + -0.1 625,747 + +3.5 625,747 + -0.7 625,747 + +0.5 625,747 + -0.9 625,748 - -0.6 625,748 - -0.1 625,755 + +0.2 625,755 + -0.9 625,755 + -0.8 625,755 + +3.1 625,755 + -1.8 625,755 + -0.4 625,755 + +1.8 625,755 + -1.1 625,756 - +3.4 625,756 - -0.9 625,756 - -2.6 625,756 - -0.9 625,756 - -0.8 625,756 - +1.1 625,756 - -1.7 625,756 - -0.5 625,756 - +0.9 625,764 + -0.1 625,765 - +1.0 625,801 + -0.7 625,801 + -0.5 625,801 + -0.4 625,802 - +1.9 625,802 - +0.8 625,812 - +0.4 625,993 - -0.6 625,997 - +0.7 625,997 - -0.6 625,997 - +0.1 625,997 - -0.8 625,997 - +0.9 625,997 - -0.2 626,006 - +0.5 626,016 - +0.2 626,016 - +1.8 626,016 - +0.2 626,016 - -1.2 626,022 - +1.8 626,022 - +1.5 626,041 - -0.2
Or see this region's nucleotide sequence