Strain Fitness in Pantoea sp. MT58 around IAI47_00500

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
112,283	+		IAI47_00495	0.40	+0.7
112,283	+		IAI47_00495	0.40	-1.8
112,283	+		IAI47_00495	0.40	-1.0
112,283	+		IAI47_00495	0.40	+0.5
112,283	+		IAI47_00495	0.40	+0.4
112,283	+		IAI47_00495	0.40	-0.8
112,283	+		IAI47_00495	0.40	+1.7
112,283	+		IAI47_00495	0.40	+0.0
112,283	+		IAI47_00495	0.40	-1.3
112,283	+		IAI47_00495	0.40	-0.4
112,283	+		IAI47_00495	0.40	+4.2
112,283	+		IAI47_00495	0.40	-0.8
112,283	+		IAI47_00495	0.40	-0.5
112,284	-		IAI47_00495	0.40	-0.6
112,284	-		IAI47_00495	0.40	-0.4
112,284	-		IAI47_00495	0.40	-1.1
112,284	-		IAI47_00495	0.40	-1.6
112,284	-		IAI47_00495	0.40	+1.3
112,284	-		IAI47_00495	0.40	+1.4
112,284	-		IAI47_00495	0.40	-0.7
112,284	-		IAI47_00495	0.40	+0.2
112,284	-		IAI47_00495	0.40	-0.1
112,288	-		IAI47_00495	0.41	+1.0
112,288	-		IAI47_00495	0.41	+0.1
112,288	-		IAI47_00495	0.41	-0.1
112,288	-		IAI47_00495	0.41	+1.3
112,333	+		IAI47_00495	0.44	-0.0
112,336	+		IAI47_00495	0.44	+2.1
112,336	+		IAI47_00495	0.44	+0.7
112,337	-		IAI47_00495	0.44	-1.6
112,379	+		IAI47_00495	0.47	+3.0
112,420	+		IAI47_00495	0.50	-2.1
112,421	-		IAI47_00495	0.50	-1.0
112,462	+		IAI47_00495	0.53	-1.3
112,462	+		IAI47_00495	0.53	+2.0
112,462	+		IAI47_00495	0.53	-1.0
112,463	-		IAI47_00495	0.53	+1.3
112,481	+		IAI47_00495	0.55	-3.8
112,544	+		IAI47_00495	0.59	+0.9
112,544	+		IAI47_00495	0.59	-1.2
112,544	+		IAI47_00495	0.59	-0.3
112,545	-		IAI47_00495	0.59	-0.8
112,545	-		IAI47_00495	0.59	+2.2
112,545	-		IAI47_00495	0.59	-0.1
112,545	-		IAI47_00495	0.59	-2.3
112,545	-		IAI47_00495	0.59	+0.1
112,545	-		IAI47_00495	0.59	+1.1
112,591	-		IAI47_00495	0.63	-0.5
112,591	-		IAI47_00495	0.63	-1.3
112,613	+		IAI47_00495	0.64	-0.5
112,613	+		IAI47_00495	0.64	+3.0
112,614	-		IAI47_00495	0.64	+0.7
112,614	-		IAI47_00495	0.64	-2.7
112,614	-		IAI47_00495	0.64	-2.3
112,671	+		IAI47_00495	0.69	+1.8
112,672	-		IAI47_00495	0.69	+0.7
112,672	-		IAI47_00495	0.69	-0.2
112,672	-		IAI47_00495	0.69	-0.8
112,722	+		IAI47_00495	0.72	+0.0
112,802	+		IAI47_00495	0.78	-1.0
112,802	+		IAI47_00495	0.78	-0.6
112,803	-		IAI47_00495	0.78	+1.1
112,905	-		IAI47_00495	0.86	+3.0
112,905	-		IAI47_00495	0.86	-1.6
112,905	-		IAI47_00495	0.86	-1.5
112,916	+		IAI47_00495	0.86	+0.5
112,916	+		IAI47_00495	0.86	-1.4
112,917	-		IAI47_00495	0.86	-1.8
113,047	+				-0.5
113,048	-				+0.5
113,048	-				-0.3
113,123	+				-0.2
113,123	+				+1.1
113,124	-				+0.8
113,137	+				-2.3
113,137	+				-0.6
113,137	+				-0.7
113,137	+				-2.8
113,137	+				+0.7
113,138	-				+2.8
113,138	-				+0.5
113,138	-				+2.1
113,138	-				+0.5
113,179	+				-0.4
113,179	+				-1.1
113,179	+				-0.5
113,179	+				-0.5
113,181	+				+0.3
113,182	-				-3.3
113,182	-				-0.2
113,275	-				-1.5
113,275	-				-0.7
113,350	+				-0.5
113,351	-				+0.6
113,425	+		IAI47_00500	0.10	-0.3
113,425	+		IAI47_00500	0.10	-0.2
113,425	+		IAI47_00500	0.10	-1.2
113,426	-		IAI47_00500	0.11	+1.3
113,426	-		IAI47_00500	0.11	-2.4
113,426	-		IAI47_00500	0.11	-0.6
113,426	-		IAI47_00500	0.11	-0.1
113,440	+		IAI47_00500	0.11	-0.1
113,440	+		IAI47_00500	0.11	-2.1
113,440	+		IAI47_00500	0.11	+0.2
113,440	+		IAI47_00500	0.11	-1.8
113,441	-		IAI47_00500	0.11	-2.2
113,441	-		IAI47_00500	0.11	+0.5
113,449	+		IAI47_00500	0.12	-1.8
113,450	+		IAI47_00500	0.12	-0.7
113,450	+		IAI47_00500	0.12	-0.5
113,450	+		IAI47_00500	0.12	-2.8
113,450	+		IAI47_00500	0.12	-0.3
113,450	+		IAI47_00500	0.12	+1.8
113,450	+		IAI47_00500	0.12	-3.2
113,451	-		IAI47_00500	0.12	+0.5
113,451	-		IAI47_00500	0.12	-2.5
113,451	-		IAI47_00500	0.12	-1.3
113,451	-		IAI47_00500	0.12	+0.4
113,451	-		IAI47_00500	0.12	+1.2
113,451	-		IAI47_00500	0.12	-1.3
113,453	+		IAI47_00500	0.12	+0.4
113,453	+		IAI47_00500	0.12	-0.2
113,453	+		IAI47_00500	0.12	-2.3
113,460	-		IAI47_00500	0.12	+0.2
113,460	-		IAI47_00500	0.12	-0.3
113,494	+		IAI47_00500	0.14	-0.2
113,494	+		IAI47_00500	0.14	+1.7
113,495	-		IAI47_00500	0.14	-0.3
113,495	-		IAI47_00500	0.14	-2.1
113,496	+		IAI47_00500	0.14	-1.6
113,496	+		IAI47_00500	0.14	+0.3
113,496	+		IAI47_00500	0.14	-1.5
113,497	-		IAI47_00500	0.14	-2.1
113,497	-		IAI47_00500	0.14	-2.6
113,505	-		IAI47_00500	0.14	+1.1
113,505	-		IAI47_00500	0.14	-1.5
113,671	+		IAI47_00500	0.22	-0.3
113,732	-		IAI47_00500	0.25	-0.1
113,735	+		IAI47_00500	0.25	+0.2
113,735	+		IAI47_00500	0.25	+0.3
113,735	+		IAI47_00500	0.25	-1.7
113,736	-		IAI47_00500	0.25	-0.3
113,736	-		IAI47_00500	0.25	+1.8
113,823	-		IAI47_00500	0.30	+1.8
113,829	+		IAI47_00500	0.30	-1.8
113,830	-		IAI47_00500	0.30	-0.6
113,921	-		IAI47_00500	0.34	-0.9
113,954	-		IAI47_00500	0.36	-0.9
113,967	+		IAI47_00500	0.37	-2.1
114,101	-		IAI47_00500	0.43	-0.8
114,101	-		IAI47_00500	0.43	-0.8
114,166	+		IAI47_00500	0.46	+0.2
114,166	+		IAI47_00500	0.46	-1.6
114,166	+		IAI47_00500	0.46	-1.1
114,166	+		IAI47_00500	0.46	+5.3
114,166	+		IAI47_00500	0.46	+0.5
114,166	+		IAI47_00500	0.46	-1.0
114,166	+		IAI47_00500	0.46	-2.5
114,166	+		IAI47_00500	0.46	+0.4
114,166	+		IAI47_00500	0.46	-1.0
114,166	+		IAI47_00500	0.46	-2.9
114,167	-		IAI47_00500	0.46	+0.7
114,167	-		IAI47_00500	0.46	-0.7
114,167	-		IAI47_00500	0.46	-1.5
114,167	-		IAI47_00500	0.46	+0.3
114,167	-		IAI47_00500	0.46	-0.8
114,170	+		IAI47_00500	0.46	-0.2
114,170	+		IAI47_00500	0.46	-1.6
114,170	+		IAI47_00500	0.46	-0.8
114,170	+		IAI47_00500	0.46	-2.0
114,170	+		IAI47_00500	0.46	+0.3
114,170	+		IAI47_00500	0.46	-2.6
114,170	+		IAI47_00500	0.46	-1.9
114,170	+		IAI47_00500	0.46	+0.2
114,170	+		IAI47_00500	0.46	+1.8
114,171	-		IAI47_00500	0.46	+0.7
114,171	-		IAI47_00500	0.46	-0.5
114,171	-		IAI47_00500	0.46	-1.2
114,171	-		IAI47_00500	0.46	-2.3
114,281	-		IAI47_00500	0.52	-2.3
114,281	-		IAI47_00500	0.52	-2.4
114,281	-		IAI47_00500	0.52	-1.5
114,382	+		IAI47_00500	0.57	+2.0
114,446	+		IAI47_00500	0.60	+5.2
114,446	+		IAI47_00500	0.60	-2.3
114,446	+		IAI47_00500	0.60	-0.2
114,447	-		IAI47_00500	0.60	-1.2
114,447	-		IAI47_00500	0.60	-1.6
114,546	+		IAI47_00500	0.64	-3.1
114,546	+		IAI47_00500	0.64	+0.8
114,547	-		IAI47_00500	0.64	-2.8
114,547	-		IAI47_00500	0.64	+1.3
114,547	-		IAI47_00500	0.64	+0.9
114,547	-		IAI47_00500	0.64	+0.1
114,550	-		IAI47_00500	0.65	+0.9
114,550	-		IAI47_00500	0.65	-0.8
114,589	+		IAI47_00500	0.66	-0.7
114,589	+		IAI47_00500	0.66	-0.1
114,589	+		IAI47_00500	0.66	-1.8
114,589	+		IAI47_00500	0.66	-0.0
114,589	+		IAI47_00500	0.66	+1.4
114,590	-		IAI47_00500	0.67	-1.2
114,590	-		IAI47_00500	0.67	+0.5
114,614	+		IAI47_00500	0.68	-1.0
114,615	-		IAI47_00500	0.68	+0.8
114,713	+		IAI47_00500	0.72	+0.3
114,713	+		IAI47_00500	0.72	-0.8
114,714	-		IAI47_00500	0.72	-1.2
114,726	-		IAI47_00500	0.73	-0.3
114,831	+		IAI47_00500	0.78	-1.6
114,843	-		IAI47_00500	0.79	-0.5
114,843	-		IAI47_00500	0.79	+0.1
114,843	-		IAI47_00500	0.79	-0.5
114,843	-		IAI47_00500	0.79	+0.3
114,901	+		IAI47_00500	0.81	-1.2
114,901	+		IAI47_00500	0.81	-1.3
114,902	-		IAI47_00500	0.82	-1.4
114,902	-		IAI47_00500	0.82	-1.0
114,928	+		IAI47_00500	0.83	-1.8
114,929	-		IAI47_00500	0.83	+0.5
114,939	+		IAI47_00500	0.83	+0.2
114,939	+		IAI47_00500	0.83	+2.2
114,940	-		IAI47_00500	0.83	-1.0
114,940	-		IAI47_00500	0.83	-1.0
114,940	-		IAI47_00500	0.83	-1.0
114,940	-		IAI47_00500	0.83	-1.3
114,940	-		IAI47_00500	0.83	+0.2
114,940	-		IAI47_00500	0.83	-0.1
114,940	-		IAI47_00500	0.83	+1.8
114,947	-		IAI47_00500	0.84	-0.1
115,069	+		IAI47_00500	0.90	-1.2
115,069	+		IAI47_00500	0.90	-0.2
115,069	+		IAI47_00500	0.90	+1.8
115,070	-		IAI47_00500	0.90	-0.2
115,094	+				-0.5
115,094	+				-1.0
115,094	+				+2.4
115,094	+				+2.2
115,094	+				+1.2
115,095	-				+2.6
115,095	-				-0.2
115,095	-				-0.3
115,095	-				+1.8
115,095	-				-2.0
115,095	-				-0.1
115,095	-				-2.2
115,108	+				-3.0
115,129	+				-0.8
115,129	+				-0.0
115,129	+				-2.6
115,129	+				-2.6
115,129	+				+0.3
115,130	-				+0.5
115,130	-				-2.3
115,130	-				-2.5
115,130	-				+0.6
115,130	-				-1.0
115,130	-				-0.1
115,130	-				-2.2
115,130	-				-2.8
115,134	+				-1.2
115,134	+				-3.7
115,134	+				+0.2
115,134	+				+3.0
115,134	+				-2.1
115,134	+				-0.3
115,134	+				-1.2
115,134	+				+0.1
115,134	+				+0.8
115,134	+				-2.3
115,134	+				+0.7
115,134	+				+0.8
115,134	+				+0.8
115,135	-				+0.2
115,135	-				-2.7
115,135	-				-0.6
115,135	-				+1.1
115,135	-				-2.3
115,135	-				-1.8
115,135	-				+0.4
115,135	-				+0.2
115,135	-				+0.2
115,135	-				-2.3
115,135	-				-0.8
115,135	-				-1.9
115,135	-				-3.6
115,135	-				-0.2
115,135	-				-2.4
115,155	+				+1.8
115,155	+				+1.1
115,249	+				+1.0
115,249	+				-0.2
115,249	+				-0.6
115,249	+				+2.8
115,250	-				+2.3
115,250	-				+0.7
115,250	-				+0.2
115,293	+				+0.0
115,369	+		IAI47_00505	0.12	-1.2
115,369	+		IAI47_00505	0.12	-0.4
115,369	+		IAI47_00505	0.12	-0.8
115,369	+		IAI47_00505	0.12	+2.7
115,370	-		IAI47_00505	0.13	-1.3
115,457	+		IAI47_00505	0.25	+0.8
115,469	+		IAI47_00505	0.27	+1.4
115,469	+		IAI47_00505	0.27	-3.1
115,469	+		IAI47_00505	0.27	+0.8
115,469	+		IAI47_00505	0.27	-1.1
115,470	-		IAI47_00505	0.27	+1.7
115,505	+		IAI47_00505	0.32	-0.8
115,505	+		IAI47_00505	0.32	-1.3
115,505	+		IAI47_00505	0.32	+0.3
115,506	-		IAI47_00505	0.32	+3.2
115,506	-		IAI47_00505	0.32	+2.8
115,512	+		IAI47_00505	0.33	+2.0
115,513	-		IAI47_00505	0.33	-1.5
115,552	-		IAI47_00505	0.39	+1.8
115,650	+		IAI47_00505	0.53	+1.8
115,650	+		IAI47_00505	0.53	-3.7
115,650	+		IAI47_00505	0.53	-1.0
115,650	+		IAI47_00505	0.53	+0.8
115,650	+		IAI47_00505	0.53	-2.9
115,699	+		IAI47_00505	0.60	-0.8
115,699	+		IAI47_00505	0.60	+1.1
115,700	-		IAI47_00505	0.60	+0.4
115,732	+		IAI47_00505	0.64	-1.5
115,732	+		IAI47_00505	0.64	+5.2
115,732	+		IAI47_00505	0.64	-1.8
115,896	+		IAI47_00505	0.88	-1.1
115,896	+		IAI47_00505	0.88	+2.7
115,897	-		IAI47_00505	0.88	-0.8
115,897	-		IAI47_00505	0.88	-2.8
115,897	-		IAI47_00505	0.88	+0.1
115,984	+				+2.2
115,984	+				-3.0
115,984	+				+3.2
115,984	+				-0.7
115,984	+				+0.8
115,984	+				-1.9
115,984	+				+3.8
115,985	-				+0.0
115,985	-				+2.8
115,985	-				-0.8
115,985	-				+0.1
115,985	-				+1.7
115,988	+				+1.8
115,989	-				+0.1
115,989	-				+0.9
115,989	-				-0.3
115,989	-				+0.4
116,042	+				+0.5
116,043	-				-1.3
116,043	-				-2.0
116,043	-				+2.3
116,082	-				+1.1
116,092	+				-3.2
116,092	+				-0.9
116,092	+				-1.3
116,093	-				+0.4
116,168	+				+0.8
116,189	+				+4.3
116,190	-				-0.7
116,238	-		IAI47_00510	0.12	-0.1