Strain Fitness in Dechlorosoma suillum PS around Dsui_3226

Experiment: ALP with Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3225 and Dsui_3226 are separated by 278 nucleotidesDsui_3226 and Dsui_3227 are separated by 76 nucleotides Dsui_3225: Dsui_3225 - ribosome small subunit-dependent GTPase A, at 3,463,061 to 3,463,948 _3225 Dsui_3226: Dsui_3226 - putative SAM-dependent methyltransferase, at 3,464,227 to 3,465,186 _3226 Dsui_3227: Dsui_3227 - 2-isopropylmalate synthase, at 3,465,263 to 3,466,945 _3227 Position (kb) 3464 3465 3466Strain fitness (log2 ratio) -3 -2 -1 0 1at 3463.966 kb on - strandat 3464.058 kb on + strandat 3464.206 kb on + strandat 3464.263 kb on + strandat 3464.324 kb on + strand, within Dsui_3226at 3464.372 kb on + strand, within Dsui_3226at 3464.395 kb on - strand, within Dsui_3226at 3464.486 kb on - strand, within Dsui_3226at 3464.667 kb on - strand, within Dsui_3226at 3464.681 kb on - strandat 3464.791 kb on + strand, within Dsui_3226at 3464.965 kb on + strand, within Dsui_3226at 3464.990 kb on + strand, within Dsui_3226at 3464.998 kb on + strand, within Dsui_3226at 3465.052 kb on + strand, within Dsui_3226at 3465.052 kb on + strandat 3465.060 kb on - strand, within Dsui_3226at 3465.071 kb on - strandat 3465.104 kb on + strandat 3465.279 kb on + strandat 3465.330 kb on - strandat 3465.415 kb on - strandat 3465.578 kb on + strand, within Dsui_3227at 3465.586 kb on - strand, within Dsui_3227at 3465.608 kb on - strand, within Dsui_3227at 3465.612 kb on - strand, within Dsui_3227at 3465.637 kb on + strand, within Dsui_3227at 3465.659 kb on - strand, within Dsui_3227at 3465.697 kb on + strandat 3465.982 kb on - strand, within Dsui_3227at 3466.071 kb on - strand, within Dsui_3227

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM
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3,463,966 - +0.7
3,464,058 + -0.1
3,464,206 + -0.9
3,464,263 + -0.3
3,464,324 + Dsui_3226 0.10 +0.7
3,464,372 + Dsui_3226 0.15 +0.7
3,464,395 - Dsui_3226 0.17 -0.9
3,464,486 - Dsui_3226 0.27 -1.7
3,464,667 - Dsui_3226 0.46 -2.5
3,464,681 - +0.7
3,464,791 + Dsui_3226 0.59 -1.9
3,464,965 + Dsui_3226 0.77 +0.1
3,464,990 + Dsui_3226 0.79 -0.3
3,464,998 + Dsui_3226 0.80 -2.3
3,465,052 + Dsui_3226 0.86 -2.3
3,465,052 + +0.7
3,465,060 - Dsui_3226 0.87 -0.9
3,465,071 - +0.7
3,465,104 + -1.3
3,465,279 + -0.9
3,465,330 - -0.8
3,465,415 - -0.9
3,465,578 + Dsui_3227 0.19 -0.3
3,465,586 - Dsui_3227 0.19 +0.0
3,465,608 - Dsui_3227 0.20 +0.1
3,465,612 - Dsui_3227 0.21 -2.8
3,465,637 + Dsui_3227 0.22 -0.9
3,465,659 - Dsui_3227 0.24 -1.0
3,465,697 + +0.7
3,465,982 - Dsui_3227 0.43 -0.7
3,466,071 - Dsui_3227 0.48 -1.0

Or see this region's nucleotide sequence