Strain Fitness in Dechlorosoma suillum PS around Dsui_3164

Experiment: ALP with Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3163 and Dsui_3164 are separated by 23 nucleotidesDsui_3164 and Dsui_3165 overlap by 14 nucleotides Dsui_3163: Dsui_3163 - putative membrane protein, at 3,390,421 to 3,391,566 _3163 Dsui_3164: Dsui_3164 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,391,590 to 3,392,783 _3164 Dsui_3165: Dsui_3165 - tRNA(Ile)-lysidine synthetase, at 3,392,770 to 3,394,215 _3165 Position (kb) 3391 3392 3393Strain fitness (log2 ratio) -3 -2 -1 0 1at 3390.893 kb on + strand, within Dsui_3163at 3390.893 kb on + strand, within Dsui_3163at 3391.015 kb on - strand, within Dsui_3163at 3391.021 kb on - strand, within Dsui_3163at 3391.049 kb on + strand, within Dsui_3163at 3391.062 kb on + strand, within Dsui_3163at 3391.072 kb on + strandat 3391.188 kb on - strand, within Dsui_3163at 3391.221 kb on - strand, within Dsui_3163at 3391.278 kb on - strand, within Dsui_3163at 3391.333 kb on + strand, within Dsui_3163at 3391.371 kb on + strand, within Dsui_3163at 3391.389 kb on + strand, within Dsui_3163at 3391.421 kb on - strand, within Dsui_3163at 3391.568 kb on - strandat 3391.643 kb on - strandat 3391.685 kb on + strandat 3391.911 kb on - strand, within Dsui_3164at 3391.961 kb on + strand, within Dsui_3164at 3392.018 kb on + strand, within Dsui_3164at 3392.080 kb on + strandat 3392.152 kb on + strandat 3392.162 kb on + strand, within Dsui_3164at 3392.372 kb on + strandat 3392.398 kb on - strand, within Dsui_3164at 3392.398 kb on - strand, within Dsui_3164at 3392.470 kb on - strand, within Dsui_3164at 3392.515 kb on + strandat 3392.554 kb on - strand, within Dsui_3164at 3392.565 kb on - strand, within Dsui_3164at 3392.565 kb on - strand, within Dsui_3164at 3392.565 kb on - strand, within Dsui_3164at 3392.565 kb on - strand, within Dsui_3164at 3392.582 kb on - strand, within Dsui_3164at 3392.722 kb on + strandat 3392.753 kb on + strandat 3392.768 kb on + strandat 3392.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM
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3,390,893 + Dsui_3163 0.41 -1.2
3,390,893 + Dsui_3163 0.41 -1.4
3,391,015 - Dsui_3163 0.52 -2.6
3,391,021 - Dsui_3163 0.52 -1.4
3,391,049 + Dsui_3163 0.55 +0.2
3,391,062 + Dsui_3163 0.56 -0.5
3,391,072 + +0.6
3,391,188 - Dsui_3163 0.67 -1.7
3,391,221 - Dsui_3163 0.70 -0.4
3,391,278 - Dsui_3163 0.75 -1.4
3,391,333 + Dsui_3163 0.80 -1.4
3,391,371 + Dsui_3163 0.83 -0.1
3,391,389 + Dsui_3163 0.84 -1.1
3,391,421 - Dsui_3163 0.87 -0.4
3,391,568 - +0.6
3,391,643 - -2.7
3,391,685 + +0.6
3,391,911 - Dsui_3164 0.27 +0.6
3,391,961 + Dsui_3164 0.31 +0.6
3,392,018 + Dsui_3164 0.36 -0.4
3,392,080 + +0.6
3,392,152 + +0.6
3,392,162 + Dsui_3164 0.48 -0.4
3,392,372 + +0.6
3,392,398 - Dsui_3164 0.68 -3.0
3,392,398 - Dsui_3164 0.68 -1.7
3,392,470 - Dsui_3164 0.74 +1.6
3,392,515 + -0.4
3,392,554 - Dsui_3164 0.81 -1.4
3,392,565 - Dsui_3164 0.82 -0.4
3,392,565 - Dsui_3164 0.82 -0.7
3,392,565 - Dsui_3164 0.82 +0.6
3,392,565 - Dsui_3164 0.82 +0.6
3,392,582 - Dsui_3164 0.83 +0.6
3,392,722 + -0.4
3,392,753 + -1.0
3,392,768 + +0.6
3,392,771 - +0.6

Or see this region's nucleotide sequence