Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3161 and Dsui_3162 are separated by 311 nucleotides Dsui_3162 and Dsui_3163 overlap by 1 nucleotides
Dsui_3161: Dsui_3161 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,386,064 to 3,387,986
_3161
Dsui_3162: Dsui_3162 - TonB-dependent siderophore receptor, at 3,388,298 to 3,390,421
_3162
Dsui_3163: Dsui_3163 - putative membrane protein, at 3,390,421 to 3,391,566
_3163
Position (kb)
3388
3389
3390
3391 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3387.302 kb on + strand, within Dsui_3161 at 3387.605 kb on + strand, within Dsui_3161 at 3387.673 kb on + strand, within Dsui_3161 at 3387.719 kb on + strand, within Dsui_3161 at 3387.918 kb on + strand at 3387.988 kb on - strand at 3388.269 kb on + strand at 3388.316 kb on - strand at 3388.345 kb on + strand at 3388.358 kb on - strand at 3388.382 kb on + strand at 3388.390 kb on - strand at 3388.402 kb on - strand at 3388.432 kb on - strand at 3388.432 kb on - strand at 3388.433 kb on - strand at 3388.553 kb on + strand, within Dsui_3162 at 3388.627 kb on - strand at 3388.700 kb on + strand, within Dsui_3162 at 3388.700 kb on + strand, within Dsui_3162 at 3388.751 kb on - strand, within Dsui_3162 at 3388.808 kb on + strand, within Dsui_3162 at 3388.813 kb on + strand, within Dsui_3162 at 3388.922 kb on - strand, within Dsui_3162 at 3388.955 kb on + strand, within Dsui_3162 at 3388.963 kb on - strand, within Dsui_3162 at 3388.989 kb on + strand, within Dsui_3162 at 3389.031 kb on + strand, within Dsui_3162 at 3389.126 kb on - strand, within Dsui_3162 at 3389.263 kb on - strand at 3389.329 kb on + strand, within Dsui_3162 at 3389.341 kb on + strand, within Dsui_3162 at 3389.490 kb on + strand, within Dsui_3162 at 3389.503 kb on - strand, within Dsui_3162 at 3389.533 kb on - strand, within Dsui_3162 at 3389.633 kb on + strand, within Dsui_3162 at 3389.681 kb on + strand, within Dsui_3162 at 3389.745 kb on + strand, within Dsui_3162 at 3389.763 kb on - strand, within Dsui_3162 at 3389.765 kb on + strand, within Dsui_3162 at 3389.785 kb on - strand, within Dsui_3162 at 3389.895 kb on + strand, within Dsui_3162 at 3389.934 kb on + strand at 3390.037 kb on - strand, within Dsui_3162 at 3390.252 kb on - strand at 3390.273 kb on - strand at 3390.286 kb on + strand at 3390.301 kb on - strand at 3390.495 kb on - strand at 3390.570 kb on + strand, within Dsui_3163 at 3390.893 kb on + strand, within Dsui_3163 at 3390.893 kb on + strand, within Dsui_3163 at 3391.015 kb on - strand, within Dsui_3163 at 3391.021 kb on - strand, within Dsui_3163 at 3391.049 kb on + strand, within Dsui_3163 at 3391.062 kb on + strand, within Dsui_3163 at 3391.072 kb on + strand at 3391.188 kb on - strand, within Dsui_3163 at 3391.221 kb on - strand, within Dsui_3163 at 3391.278 kb on - strand, within Dsui_3163 at 3391.333 kb on + strand, within Dsui_3163 at 3391.371 kb on + strand, within Dsui_3163 at 3391.389 kb on + strand, within Dsui_3163 at 3391.421 kb on - strand, within Dsui_3163
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 3,387,302 + Dsui_3161 0.64 +0.6 3,387,605 + Dsui_3161 0.80 +0.6 3,387,673 + Dsui_3161 0.84 -1.4 3,387,719 + Dsui_3161 0.86 -0.4 3,387,918 + -1.5 3,387,988 - -2.0 3,388,269 + +2.2 3,388,316 - +0.6 3,388,345 + -0.7 3,388,358 - -1.0 3,388,382 + +0.6 3,388,390 - -0.4 3,388,402 - +0.6 3,388,432 - -0.4 3,388,432 - +0.6 3,388,433 - -1.0 3,388,553 + Dsui_3162 0.12 +0.6 3,388,627 - +0.6 3,388,700 + Dsui_3162 0.19 -0.7 3,388,700 + Dsui_3162 0.19 -0.5 3,388,751 - Dsui_3162 0.21 -0.4 3,388,808 + Dsui_3162 0.24 -1.9 3,388,813 + Dsui_3162 0.24 +0.6 3,388,922 - Dsui_3162 0.29 +0.6 3,388,955 + Dsui_3162 0.31 -0.3 3,388,963 - Dsui_3162 0.31 +0.6 3,388,989 + Dsui_3162 0.33 -1.3 3,389,031 + Dsui_3162 0.35 -1.2 3,389,126 - Dsui_3162 0.39 -0.4 3,389,263 - -0.4 3,389,329 + Dsui_3162 0.49 -0.9 3,389,341 + Dsui_3162 0.49 -1.5 3,389,490 + Dsui_3162 0.56 +0.8 3,389,503 - Dsui_3162 0.57 +0.6 3,389,533 - Dsui_3162 0.58 +0.6 3,389,633 + Dsui_3162 0.63 +0.6 3,389,681 + Dsui_3162 0.65 -1.0 3,389,745 + Dsui_3162 0.68 -0.4 3,389,763 - Dsui_3162 0.69 +0.6 3,389,765 + Dsui_3162 0.69 -2.2 3,389,785 - Dsui_3162 0.70 -0.4 3,389,895 + Dsui_3162 0.75 -0.9 3,389,934 + +1.6 3,390,037 - Dsui_3162 0.82 -0.4 3,390,252 - +0.6 3,390,273 - -1.0 3,390,286 + -0.9 3,390,301 - -0.4 3,390,495 - -3.2 3,390,570 + Dsui_3163 0.13 +0.6 3,390,893 + Dsui_3163 0.41 -1.2 3,390,893 + Dsui_3163 0.41 -1.4 3,391,015 - Dsui_3163 0.52 -2.6 3,391,021 - Dsui_3163 0.52 -1.4 3,391,049 + Dsui_3163 0.55 +0.2 3,391,062 + Dsui_3163 0.56 -0.5 3,391,072 + +0.6 3,391,188 - Dsui_3163 0.67 -1.7 3,391,221 - Dsui_3163 0.70 -0.4 3,391,278 - Dsui_3163 0.75 -1.4 3,391,333 + Dsui_3163 0.80 -1.4 3,391,371 + Dsui_3163 0.83 -0.1 3,391,389 + Dsui_3163 0.84 -1.1 3,391,421 - Dsui_3163 0.87 -0.4
Or see this region's nucleotide sequence