Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3159 and Dsui_3160 are separated by 3 nucleotides Dsui_3160 and Dsui_3161 are separated by 11 nucleotides
Dsui_3159: Dsui_3159 - PAS domain S-box, at 3,383,458 to 3,385,446
_3159
Dsui_3160: Dsui_3160 - response regulator, at 3,385,450 to 3,386,052
_3160
Dsui_3161: Dsui_3161 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,386,064 to 3,387,986
_3161
Position (kb)
3385
3386
3387 Strain fitness (log2 ratio)
-1
0
1 at 3384.507 kb on - strand, within Dsui_3159 at 3384.538 kb on - strand, within Dsui_3159 at 3384.577 kb on - strand, within Dsui_3159 at 3384.681 kb on - strand, within Dsui_3159 at 3384.715 kb on + strand, within Dsui_3159 at 3384.914 kb on - strand, within Dsui_3159 at 3385.055 kb on + strand, within Dsui_3159 at 3385.081 kb on + strand, within Dsui_3159 at 3385.095 kb on + strand, within Dsui_3159 at 3385.181 kb on + strand, within Dsui_3159 at 3385.234 kb on + strand, within Dsui_3159 at 3385.247 kb on - strand, within Dsui_3159 at 3385.330 kb on - strand at 3385.330 kb on - strand at 3385.377 kb on + strand at 3385.440 kb on + strand at 3385.567 kb on - strand, within Dsui_3160 at 3385.608 kb on + strand, within Dsui_3160 at 3385.640 kb on + strand, within Dsui_3160 at 3385.640 kb on + strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.673 kb on - strand, within Dsui_3160 at 3385.680 kb on - strand, within Dsui_3160 at 3385.716 kb on + strand, within Dsui_3160 at 3385.768 kb on + strand, within Dsui_3160 at 3385.883 kb on + strand, within Dsui_3160 at 3385.993 kb on - strand at 3386.032 kb on + strand at 3386.054 kb on - strand at 3386.131 kb on + strand at 3386.204 kb on - strand at 3386.234 kb on - strand at 3386.261 kb on + strand, within Dsui_3161 at 3386.445 kb on - strand, within Dsui_3161 at 3386.453 kb on + strand, within Dsui_3161 at 3386.536 kb on + strand, within Dsui_3161 at 3386.680 kb on - strand at 3386.777 kb on - strand, within Dsui_3161 at 3386.830 kb on + strand, within Dsui_3161
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 3,384,507 - Dsui_3159 0.53 +0.6 3,384,538 - Dsui_3159 0.54 +0.6 3,384,577 - Dsui_3159 0.56 +0.6 3,384,681 - Dsui_3159 0.61 -0.4 3,384,715 + Dsui_3159 0.63 +0.0 3,384,914 - Dsui_3159 0.73 +0.6 3,385,055 + Dsui_3159 0.80 +0.0 3,385,081 + Dsui_3159 0.82 -0.3 3,385,095 + Dsui_3159 0.82 -0.1 3,385,181 + Dsui_3159 0.87 -0.5 3,385,234 + Dsui_3159 0.89 -1.6 3,385,247 - Dsui_3159 0.90 +0.6 3,385,330 - -1.7 3,385,330 - +0.6 3,385,377 + -0.6 3,385,440 + -1.3 3,385,567 - Dsui_3160 0.19 +0.6 3,385,608 + Dsui_3160 0.26 -0.5 3,385,640 + Dsui_3160 0.32 +0.4 3,385,640 + Dsui_3160 0.32 +0.1 3,385,648 - Dsui_3160 0.33 -0.4 3,385,648 - Dsui_3160 0.33 -1.4 3,385,648 - Dsui_3160 0.33 +0.6 3,385,648 - Dsui_3160 0.33 -1.0 3,385,673 - Dsui_3160 0.37 +0.6 3,385,680 - Dsui_3160 0.38 +0.6 3,385,716 + Dsui_3160 0.44 -0.2 3,385,768 + Dsui_3160 0.53 +0.8 3,385,883 + Dsui_3160 0.72 -0.7 3,385,993 - +0.6 3,386,032 + -1.7 3,386,054 - +0.6 3,386,131 + -1.0 3,386,204 - +0.6 3,386,234 - -1.4 3,386,261 + Dsui_3161 0.10 -1.0 3,386,445 - Dsui_3161 0.20 +0.6 3,386,453 + Dsui_3161 0.20 +0.6 3,386,536 + Dsui_3161 0.25 -1.4 3,386,680 - -0.4 3,386,777 - Dsui_3161 0.37 +0.6 3,386,830 + Dsui_3161 0.40 -1.0
Or see this region's nucleotide sequence