Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2737 and Dsui_2738 overlap by 8 nucleotides Dsui_2738 and Dsui_2739 are separated by 129 nucleotides Dsui_2739 and Dsui_2740 are separated by 24 nucleotides Dsui_2740 and Dsui_2741 are separated by 11 nucleotides Dsui_2741 and Dsui_2742 are separated by 25 nucleotides
Dsui_2737: Dsui_2737 - glycine dehydrogenase, decarboxylating, at 2,891,117 to 2,894,017
_2737
Dsui_2738: Dsui_2738 - glycine cleavage system regulatory protein, at 2,894,010 to 2,894,537
_2738
Dsui_2739: Dsui_2739 - pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component, at 2,894,667 to 2,894,936
_2739
Dsui_2740: Dsui_2740 - putative integral membrane protein, at 2,894,961 to 2,895,698
_2740
Dsui_2741: Dsui_2741 - PAS domain S-box, at 2,895,710 to 2,896,276
_2741
Dsui_2742: Dsui_2742 - molecular chaperone, at 2,896,302 to 2,897,567
_2742
Position (kb)
2894
2895
2896 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2894.086 kb on + strand, within Dsui_2738 at 2894.089 kb on + strand, within Dsui_2738 at 2894.161 kb on - strand, within Dsui_2738 at 2894.350 kb on + strand, within Dsui_2738 at 2894.388 kb on + strand, within Dsui_2738 at 2894.388 kb on - strand, within Dsui_2738 at 2894.491 kb on - strand at 2894.564 kb on + strand at 2894.619 kb on + strand at 2894.651 kb on + strand at 2894.659 kb on - strand at 2894.702 kb on - strand, within Dsui_2739 at 2894.774 kb on - strand, within Dsui_2739 at 2894.837 kb on - strand, within Dsui_2739 at 2894.839 kb on + strand at 2895.004 kb on - strand at 2895.134 kb on - strand, within Dsui_2740 at 2895.151 kb on + strand, within Dsui_2740 at 2895.237 kb on - strand at 2895.293 kb on - strand, within Dsui_2740 at 2895.343 kb on + strand at 2895.441 kb on + strand at 2895.446 kb on + strand, within Dsui_2740 at 2895.494 kb on - strand at 2895.516 kb on - strand at 2895.607 kb on + strand, within Dsui_2740 at 2895.658 kb on - strand at 2895.673 kb on + strand at 2895.704 kb on + strand at 2895.712 kb on - strand at 2895.735 kb on + strand at 2895.744 kb on + strand at 2895.759 kb on + strand at 2895.784 kb on + strand, within Dsui_2741 at 2895.859 kb on + strand, within Dsui_2741 at 2895.864 kb on - strand at 2895.883 kb on - strand, within Dsui_2741 at 2895.944 kb on + strand, within Dsui_2741 at 2895.944 kb on + strand, within Dsui_2741 at 2895.944 kb on + strand, within Dsui_2741 at 2895.953 kb on - strand, within Dsui_2741 at 2895.957 kb on - strand at 2895.957 kb on - strand, within Dsui_2741 at 2896.043 kb on - strand, within Dsui_2741 at 2896.220 kb on - strand at 2896.251 kb on - strand at 2896.269 kb on - strand at 2896.278 kb on - strand at 2896.329 kb on + strand at 2896.383 kb on + strand at 2896.396 kb on - strand at 2896.512 kb on - strand, within Dsui_2742 at 2896.536 kb on - strand, within Dsui_2742 at 2896.536 kb on - strand, within Dsui_2742 at 2896.606 kb on - strand, within Dsui_2742 at 2896.606 kb on - strand, within Dsui_2742 at 2896.606 kb on - strand, within Dsui_2742 at 2896.627 kb on + strand, within Dsui_2742 at 2896.635 kb on - strand, within Dsui_2742
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 2,894,086 + Dsui_2738 0.14 -0.2 2,894,089 + Dsui_2738 0.15 -2.6 2,894,161 - Dsui_2738 0.29 +0.8 2,894,350 + Dsui_2738 0.64 -0.8 2,894,388 + Dsui_2738 0.72 -0.8 2,894,388 - Dsui_2738 0.72 -0.2 2,894,491 - -2.6 2,894,564 + +0.8 2,894,619 + +0.8 2,894,651 + -0.8 2,894,659 - +0.8 2,894,702 - Dsui_2739 0.13 -0.2 2,894,774 - Dsui_2739 0.40 -0.2 2,894,837 - Dsui_2739 0.63 -0.2 2,894,839 + +0.8 2,895,004 - -0.2 2,895,134 - Dsui_2740 0.23 -1.2 2,895,151 + Dsui_2740 0.26 +0.8 2,895,237 - +0.8 2,895,293 - Dsui_2740 0.45 -0.8 2,895,343 + -0.2 2,895,441 + +0.8 2,895,446 + Dsui_2740 0.66 -1.6 2,895,494 - +0.8 2,895,516 - +0.8 2,895,607 + Dsui_2740 0.88 -2.2 2,895,658 - +0.8 2,895,673 + +0.8 2,895,704 + -0.8 2,895,712 - -0.8 2,895,735 + -0.2 2,895,744 + -1.6 2,895,759 + +0.8 2,895,784 + Dsui_2741 0.13 -2.0 2,895,859 + Dsui_2741 0.26 +0.8 2,895,864 - +0.8 2,895,883 - Dsui_2741 0.31 +0.8 2,895,944 + Dsui_2741 0.41 +0.8 2,895,944 + Dsui_2741 0.41 -0.2 2,895,944 + Dsui_2741 0.41 +0.8 2,895,953 - Dsui_2741 0.43 -0.2 2,895,957 - +0.8 2,895,957 - Dsui_2741 0.44 -1.6 2,896,043 - Dsui_2741 0.59 -3.0 2,896,220 - -0.5 2,896,251 - -0.2 2,896,269 - -0.3 2,896,278 - -0.5 2,896,329 + -0.2 2,896,383 + +0.8 2,896,396 - -0.3 2,896,512 - Dsui_2742 0.17 -0.7 2,896,536 - Dsui_2742 0.18 -0.5 2,896,536 - Dsui_2742 0.18 -0.7 2,896,606 - Dsui_2742 0.24 -0.8 2,896,606 - Dsui_2742 0.24 -0.1 2,896,606 - Dsui_2742 0.24 -0.3 2,896,627 + Dsui_2742 0.26 -0.2 2,896,635 - Dsui_2742 0.26 -0.2
Or see this region's nucleotide sequence