Strain Fitness in Dechlorosoma suillum PS around Dsui_2509

Experiment: ALP with Cobalt chloride 0.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2508 and Dsui_2509 are separated by 2 nucleotidesDsui_2509 and Dsui_2510 are separated by 11 nucleotides Dsui_2508: Dsui_2508 - Fe-S-cluster-containing hydrogenase subunit, at 2,655,425 to 2,656,150 _2508 Dsui_2509: Dsui_2509 - formate-dependent nitrite reductase, membrane component, at 2,656,153 to 2,657,223 _2509 Dsui_2510: Dsui_2510 - anaerobic dehydrogenase, typically selenocysteine-containing, at 2,657,235 to 2,660,321 _2510 Position (kb) 2656 2657 2658Strain fitness (log2 ratio) -2 -1 0 1at 2655.161 kb on + strandat 2655.161 kb on + strandat 2655.161 kb on + strandat 2655.167 kb on + strandat 2655.167 kb on + strandat 2655.167 kb on + strandat 2655.169 kb on - strandat 2655.170 kb on - strandat 2655.175 kb on - strandat 2655.175 kb on - strandat 2655.185 kb on + strandat 2655.187 kb on - strandat 2655.194 kb on - strandat 2655.194 kb on - strandat 2655.205 kb on - strandat 2655.219 kb on + strandat 2655.227 kb on - strandat 2655.229 kb on + strandat 2655.248 kb on + strandat 2655.248 kb on - strandat 2655.255 kb on + strandat 2655.255 kb on - strandat 2655.256 kb on + strandat 2655.258 kb on + strandat 2655.258 kb on + strandat 2655.258 kb on + strandat 2655.265 kb on + strandat 2655.266 kb on - strandat 2655.274 kb on - strandat 2655.306 kb on + strandat 2655.315 kb on + strandat 2655.316 kb on + strandat 2655.316 kb on + strandat 2655.317 kb on - strandat 2655.317 kb on - strandat 2655.324 kb on - strandat 2655.324 kb on - strandat 2655.324 kb on - strandat 2655.324 kb on - strandat 2655.326 kb on + strandat 2655.326 kb on + strandat 2655.340 kb on + strandat 2655.342 kb on + strandat 2655.342 kb on - strandat 2655.349 kb on + strandat 2655.349 kb on + strandat 2655.349 kb on + strandat 2655.349 kb on + strandat 2655.349 kb on + strandat 2655.357 kb on - strandat 2655.357 kb on - strandat 2655.381 kb on + strandat 2655.383 kb on + strandat 2655.383 kb on + strandat 2655.383 kb on + strandat 2655.388 kb on + strandat 2655.388 kb on + strandat 2655.388 kb on + strandat 2655.390 kb on - strandat 2655.396 kb on - strandat 2655.396 kb on - strandat 2655.396 kb on - strandat 2655.407 kb on + strandat 2655.407 kb on + strandat 2655.407 kb on + strandat 2655.415 kb on - strandat 2655.415 kb on - strandat 2655.418 kb on + strandat 2655.429 kb on - strandat 2655.430 kb on + strandat 2655.430 kb on + strandat 2655.435 kb on + strandat 2655.436 kb on + strandat 2655.436 kb on + strandat 2655.438 kb on - strandat 2655.457 kb on + strandat 2655.460 kb on + strandat 2655.460 kb on + strandat 2655.496 kb on - strandat 2655.505 kb on - strand, within Dsui_2508at 2655.524 kb on + strand, within Dsui_2508at 2655.534 kb on + strand, within Dsui_2508at 2655.574 kb on + strand, within Dsui_2508at 2655.582 kb on - strand, within Dsui_2508at 2655.622 kb on + strand, within Dsui_2508at 2655.622 kb on + strand, within Dsui_2508at 2655.622 kb on + strand, within Dsui_2508at 2655.630 kb on - strand, within Dsui_2508at 2655.651 kb on + strand, within Dsui_2508at 2655.786 kb on - strand, within Dsui_2508at 2655.798 kb on - strand, within Dsui_2508at 2655.813 kb on - strand, within Dsui_2508at 2655.822 kb on - strand, within Dsui_2508at 2655.908 kb on - strand, within Dsui_2508at 2655.919 kb on - strand, within Dsui_2508at 2656.004 kb on + strand, within Dsui_2508at 2656.009 kb on + strand, within Dsui_2508at 2656.093 kb on + strandat 2656.203 kb on + strandat 2656.203 kb on + strandat 2656.203 kb on + strandat 2656.211 kb on - strandat 2656.250 kb on + strandat 2656.348 kb on - strand, within Dsui_2509at 2656.432 kb on + strand, within Dsui_2509at 2656.462 kb on - strand, within Dsui_2509at 2656.462 kb on - strand, within Dsui_2509at 2656.468 kb on + strand, within Dsui_2509at 2656.495 kb on - strand, within Dsui_2509at 2656.683 kb on + strand, within Dsui_2509at 2656.755 kb on + strand, within Dsui_2509at 2656.763 kb on - strand, within Dsui_2509at 2656.770 kb on - strand, within Dsui_2509at 2656.817 kb on + strand, within Dsui_2509at 2656.823 kb on - strand, within Dsui_2509at 2656.825 kb on - strand, within Dsui_2509at 2656.944 kb on + strand, within Dsui_2509at 2656.974 kb on - strand, within Dsui_2509at 2657.001 kb on + strand, within Dsui_2509at 2657.016 kb on + strand, within Dsui_2509at 2657.038 kb on - strand, within Dsui_2509at 2657.074 kb on - strand, within Dsui_2509at 2657.096 kb on + strand, within Dsui_2509at 2657.179 kb on + strandat 2657.187 kb on - strandat 2657.189 kb on + strandat 2657.197 kb on - strandat 2657.197 kb on - strandat 2657.394 kb on - strandat 2657.649 kb on + strand, within Dsui_2510at 2657.930 kb on - strand, within Dsui_2510at 2658.008 kb on - strand, within Dsui_2510at 2658.038 kb on + strand, within Dsui_2510at 2658.114 kb on - strand, within Dsui_2510at 2658.142 kb on - strand, within Dsui_2510at 2658.158 kb on + strand, within Dsui_2510at 2658.158 kb on + strand, within Dsui_2510at 2658.204 kb on - strand, within Dsui_2510at 2658.209 kb on - strand, within Dsui_2510at 2658.214 kb on - strand, within Dsui_2510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM
remove
2,655,161 + +0.7
2,655,161 + -1.6
2,655,161 + +0.7
2,655,167 + -2.3
2,655,167 + +0.7
2,655,167 + -2.1
2,655,169 - -0.8
2,655,170 - +0.7
2,655,175 - -0.3
2,655,175 - +0.7
2,655,185 + +0.7
2,655,187 - -0.8
2,655,194 - -0.8
2,655,194 - +0.7
2,655,205 - -0.3
2,655,219 + +0.7
2,655,227 - +0.7
2,655,229 + +0.7
2,655,248 + -0.3
2,655,248 - -0.3
2,655,255 + +0.7
2,655,255 - -0.3
2,655,256 + +0.7
2,655,258 + -0.3
2,655,258 + +0.7
2,655,258 + -0.8
2,655,265 + -0.3
2,655,266 - -0.8
2,655,274 - +0.7
2,655,306 + -0.3
2,655,315 + -1.3
2,655,316 + +0.7
2,655,316 + -1.8
2,655,317 - +0.7
2,655,317 - +0.7
2,655,324 - +0.7
2,655,324 - +0.7
2,655,324 - -0.3
2,655,324 - +0.7
2,655,326 + -0.8
2,655,326 + +0.7
2,655,340 + -0.3
2,655,342 + +0.7
2,655,342 - +0.7
2,655,349 + +0.7
2,655,349 + -0.3
2,655,349 + -0.3
2,655,349 + +0.7
2,655,349 + -1.3
2,655,357 - +0.7
2,655,357 - -0.8
2,655,381 + +0.7
2,655,383 + -0.5
2,655,383 + +0.7
2,655,383 + -0.8
2,655,388 + -1.6
2,655,388 + +0.7
2,655,388 + +0.7
2,655,390 - +0.7
2,655,396 - +0.7
2,655,396 - -1.6
2,655,396 - +0.7
2,655,407 + +0.7
2,655,407 + +0.7
2,655,407 + -0.3
2,655,415 - +0.7
2,655,415 - -0.3
2,655,418 + -0.3
2,655,429 - +0.7
2,655,430 + +0.7
2,655,430 + -0.3
2,655,435 + -0.3
2,655,436 + -0.5
2,655,436 + +0.7
2,655,438 - +0.7
2,655,457 + -0.8
2,655,460 + -1.3
2,655,460 + -0.8
2,655,496 - +0.7
2,655,505 - Dsui_2508 0.11 +0.7
2,655,524 + Dsui_2508 0.14 +0.7
2,655,534 + Dsui_2508 0.15 -0.8
2,655,574 + Dsui_2508 0.21 -1.3
2,655,582 - Dsui_2508 0.22 -0.3
2,655,622 + Dsui_2508 0.27 -0.8
2,655,622 + Dsui_2508 0.27 +0.7
2,655,622 + Dsui_2508 0.27 +0.7
2,655,630 - Dsui_2508 0.28 +0.7
2,655,651 + Dsui_2508 0.31 -1.6
2,655,786 - Dsui_2508 0.50 +0.7
2,655,798 - Dsui_2508 0.51 +0.7
2,655,813 - Dsui_2508 0.53 +0.7
2,655,822 - Dsui_2508 0.55 +0.7
2,655,908 - Dsui_2508 0.67 +0.7
2,655,919 - Dsui_2508 0.68 -0.3
2,656,004 + Dsui_2508 0.80 +0.7
2,656,009 + Dsui_2508 0.80 +0.7
2,656,093 + -1.3
2,656,203 + +0.7
2,656,203 + -0.3
2,656,203 + +0.7
2,656,211 - -1.6
2,656,250 + -1.3
2,656,348 - Dsui_2509 0.18 -0.8
2,656,432 + Dsui_2509 0.26 +0.7
2,656,462 - Dsui_2509 0.29 -0.4
2,656,462 - Dsui_2509 0.29 -1.3
2,656,468 + Dsui_2509 0.29 +0.7
2,656,495 - Dsui_2509 0.32 -0.3
2,656,683 + Dsui_2509 0.49 +0.7
2,656,755 + Dsui_2509 0.56 +0.7
2,656,763 - Dsui_2509 0.57 +0.7
2,656,770 - Dsui_2509 0.58 +0.7
2,656,817 + Dsui_2509 0.62 +0.7
2,656,823 - Dsui_2509 0.63 +0.7
2,656,825 - Dsui_2509 0.63 +0.7
2,656,944 + Dsui_2509 0.74 -1.3
2,656,974 - Dsui_2509 0.77 -0.8
2,657,001 + Dsui_2509 0.79 +0.7
2,657,016 + Dsui_2509 0.81 +0.7
2,657,038 - Dsui_2509 0.83 +0.7
2,657,074 - Dsui_2509 0.86 +0.7
2,657,096 + Dsui_2509 0.88 -0.8
2,657,179 + +0.7
2,657,187 - -0.3
2,657,189 + -0.8
2,657,197 - -0.3
2,657,197 - +0.7
2,657,394 - +0.7
2,657,649 + Dsui_2510 0.13 -0.3
2,657,930 - Dsui_2510 0.23 -0.3
2,658,008 - Dsui_2510 0.25 -1.6
2,658,038 + Dsui_2510 0.26 +0.7
2,658,114 - Dsui_2510 0.28 -0.3
2,658,142 - Dsui_2510 0.29 +0.7
2,658,158 + Dsui_2510 0.30 +0.7
2,658,158 + Dsui_2510 0.30 +0.7
2,658,204 - Dsui_2510 0.31 -1.6
2,658,209 - Dsui_2510 0.32 +0.7
2,658,214 - Dsui_2510 0.32 +0.7

Or see this region's nucleotide sequence