Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2508 and Dsui_2509 are separated by 2 nucleotides Dsui_2509 and Dsui_2510 are separated by 11 nucleotides
Dsui_2508: Dsui_2508 - Fe-S-cluster-containing hydrogenase subunit, at 2,655,425 to 2,656,150
_2508
Dsui_2509: Dsui_2509 - formate-dependent nitrite reductase, membrane component, at 2,656,153 to 2,657,223
_2509
Dsui_2510: Dsui_2510 - anaerobic dehydrogenase, typically selenocysteine-containing, at 2,657,235 to 2,660,321
_2510
Position (kb)
2656
2657
2658 Strain fitness (log2 ratio)
-2
-1
0
1 at 2655.161 kb on + strand at 2655.161 kb on + strand at 2655.161 kb on + strand at 2655.167 kb on + strand at 2655.167 kb on + strand at 2655.167 kb on + strand at 2655.169 kb on - strand at 2655.170 kb on - strand at 2655.175 kb on - strand at 2655.175 kb on - strand at 2655.185 kb on + strand at 2655.187 kb on - strand at 2655.194 kb on - strand at 2655.194 kb on - strand at 2655.205 kb on - strand at 2655.219 kb on + strand at 2655.227 kb on - strand at 2655.229 kb on + strand at 2655.248 kb on + strand at 2655.248 kb on - strand at 2655.255 kb on + strand at 2655.255 kb on - strand at 2655.256 kb on + strand at 2655.258 kb on + strand at 2655.258 kb on + strand at 2655.258 kb on + strand at 2655.265 kb on + strand at 2655.266 kb on - strand at 2655.274 kb on - strand at 2655.306 kb on + strand at 2655.315 kb on + strand at 2655.316 kb on + strand at 2655.316 kb on + strand at 2655.317 kb on - strand at 2655.317 kb on - strand at 2655.324 kb on - strand at 2655.324 kb on - strand at 2655.324 kb on - strand at 2655.324 kb on - strand at 2655.326 kb on + strand at 2655.326 kb on + strand at 2655.340 kb on + strand at 2655.342 kb on + strand at 2655.342 kb on - strand at 2655.349 kb on + strand at 2655.349 kb on + strand at 2655.349 kb on + strand at 2655.349 kb on + strand at 2655.349 kb on + strand at 2655.357 kb on - strand at 2655.357 kb on - strand at 2655.381 kb on + strand at 2655.383 kb on + strand at 2655.383 kb on + strand at 2655.383 kb on + strand at 2655.388 kb on + strand at 2655.388 kb on + strand at 2655.388 kb on + strand at 2655.390 kb on - strand at 2655.396 kb on - strand at 2655.396 kb on - strand at 2655.396 kb on - strand at 2655.407 kb on + strand at 2655.407 kb on + strand at 2655.407 kb on + strand at 2655.415 kb on - strand at 2655.415 kb on - strand at 2655.418 kb on + strand at 2655.429 kb on - strand at 2655.430 kb on + strand at 2655.430 kb on + strand at 2655.435 kb on + strand at 2655.436 kb on + strand at 2655.436 kb on + strand at 2655.438 kb on - strand at 2655.457 kb on + strand at 2655.460 kb on + strand at 2655.460 kb on + strand at 2655.496 kb on - strand at 2655.505 kb on - strand, within Dsui_2508 at 2655.524 kb on + strand, within Dsui_2508 at 2655.534 kb on + strand, within Dsui_2508 at 2655.574 kb on + strand, within Dsui_2508 at 2655.582 kb on - strand, within Dsui_2508 at 2655.622 kb on + strand, within Dsui_2508 at 2655.622 kb on + strand, within Dsui_2508 at 2655.622 kb on + strand, within Dsui_2508 at 2655.630 kb on - strand, within Dsui_2508 at 2655.651 kb on + strand, within Dsui_2508 at 2655.786 kb on - strand, within Dsui_2508 at 2655.798 kb on - strand, within Dsui_2508 at 2655.813 kb on - strand, within Dsui_2508 at 2655.822 kb on - strand, within Dsui_2508 at 2655.908 kb on - strand, within Dsui_2508 at 2655.919 kb on - strand, within Dsui_2508 at 2656.004 kb on + strand, within Dsui_2508 at 2656.009 kb on + strand, within Dsui_2508 at 2656.093 kb on + strand at 2656.203 kb on + strand at 2656.203 kb on + strand at 2656.203 kb on + strand at 2656.211 kb on - strand at 2656.250 kb on + strand at 2656.348 kb on - strand, within Dsui_2509 at 2656.432 kb on + strand, within Dsui_2509 at 2656.462 kb on - strand, within Dsui_2509 at 2656.462 kb on - strand, within Dsui_2509 at 2656.468 kb on + strand, within Dsui_2509 at 2656.495 kb on - strand, within Dsui_2509 at 2656.683 kb on + strand, within Dsui_2509 at 2656.755 kb on + strand, within Dsui_2509 at 2656.763 kb on - strand, within Dsui_2509 at 2656.770 kb on - strand, within Dsui_2509 at 2656.817 kb on + strand, within Dsui_2509 at 2656.823 kb on - strand, within Dsui_2509 at 2656.825 kb on - strand, within Dsui_2509 at 2656.944 kb on + strand, within Dsui_2509 at 2656.974 kb on - strand, within Dsui_2509 at 2657.001 kb on + strand, within Dsui_2509 at 2657.016 kb on + strand, within Dsui_2509 at 2657.038 kb on - strand, within Dsui_2509 at 2657.074 kb on - strand, within Dsui_2509 at 2657.096 kb on + strand, within Dsui_2509 at 2657.179 kb on + strand at 2657.187 kb on - strand at 2657.189 kb on + strand at 2657.197 kb on - strand at 2657.197 kb on - strand at 2657.394 kb on - strand at 2657.649 kb on + strand, within Dsui_2510 at 2657.930 kb on - strand, within Dsui_2510 at 2658.008 kb on - strand, within Dsui_2510 at 2658.038 kb on + strand, within Dsui_2510 at 2658.114 kb on - strand, within Dsui_2510 at 2658.142 kb on - strand, within Dsui_2510 at 2658.158 kb on + strand, within Dsui_2510 at 2658.158 kb on + strand, within Dsui_2510 at 2658.204 kb on - strand, within Dsui_2510 at 2658.209 kb on - strand, within Dsui_2510 at 2658.214 kb on - strand, within Dsui_2510
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 2,655,161 + +0.7 2,655,161 + -1.6 2,655,161 + +0.7 2,655,167 + -2.3 2,655,167 + +0.7 2,655,167 + -2.1 2,655,169 - -0.8 2,655,170 - +0.7 2,655,175 - -0.3 2,655,175 - +0.7 2,655,185 + +0.7 2,655,187 - -0.8 2,655,194 - -0.8 2,655,194 - +0.7 2,655,205 - -0.3 2,655,219 + +0.7 2,655,227 - +0.7 2,655,229 + +0.7 2,655,248 + -0.3 2,655,248 - -0.3 2,655,255 + +0.7 2,655,255 - -0.3 2,655,256 + +0.7 2,655,258 + -0.3 2,655,258 + +0.7 2,655,258 + -0.8 2,655,265 + -0.3 2,655,266 - -0.8 2,655,274 - +0.7 2,655,306 + -0.3 2,655,315 + -1.3 2,655,316 + +0.7 2,655,316 + -1.8 2,655,317 - +0.7 2,655,317 - +0.7 2,655,324 - +0.7 2,655,324 - +0.7 2,655,324 - -0.3 2,655,324 - +0.7 2,655,326 + -0.8 2,655,326 + +0.7 2,655,340 + -0.3 2,655,342 + +0.7 2,655,342 - +0.7 2,655,349 + +0.7 2,655,349 + -0.3 2,655,349 + -0.3 2,655,349 + +0.7 2,655,349 + -1.3 2,655,357 - +0.7 2,655,357 - -0.8 2,655,381 + +0.7 2,655,383 + -0.5 2,655,383 + +0.7 2,655,383 + -0.8 2,655,388 + -1.6 2,655,388 + +0.7 2,655,388 + +0.7 2,655,390 - +0.7 2,655,396 - +0.7 2,655,396 - -1.6 2,655,396 - +0.7 2,655,407 + +0.7 2,655,407 + +0.7 2,655,407 + -0.3 2,655,415 - +0.7 2,655,415 - -0.3 2,655,418 + -0.3 2,655,429 - +0.7 2,655,430 + +0.7 2,655,430 + -0.3 2,655,435 + -0.3 2,655,436 + -0.5 2,655,436 + +0.7 2,655,438 - +0.7 2,655,457 + -0.8 2,655,460 + -1.3 2,655,460 + -0.8 2,655,496 - +0.7 2,655,505 - Dsui_2508 0.11 +0.7 2,655,524 + Dsui_2508 0.14 +0.7 2,655,534 + Dsui_2508 0.15 -0.8 2,655,574 + Dsui_2508 0.21 -1.3 2,655,582 - Dsui_2508 0.22 -0.3 2,655,622 + Dsui_2508 0.27 -0.8 2,655,622 + Dsui_2508 0.27 +0.7 2,655,622 + Dsui_2508 0.27 +0.7 2,655,630 - Dsui_2508 0.28 +0.7 2,655,651 + Dsui_2508 0.31 -1.6 2,655,786 - Dsui_2508 0.50 +0.7 2,655,798 - Dsui_2508 0.51 +0.7 2,655,813 - Dsui_2508 0.53 +0.7 2,655,822 - Dsui_2508 0.55 +0.7 2,655,908 - Dsui_2508 0.67 +0.7 2,655,919 - Dsui_2508 0.68 -0.3 2,656,004 + Dsui_2508 0.80 +0.7 2,656,009 + Dsui_2508 0.80 +0.7 2,656,093 + -1.3 2,656,203 + +0.7 2,656,203 + -0.3 2,656,203 + +0.7 2,656,211 - -1.6 2,656,250 + -1.3 2,656,348 - Dsui_2509 0.18 -0.8 2,656,432 + Dsui_2509 0.26 +0.7 2,656,462 - Dsui_2509 0.29 -0.4 2,656,462 - Dsui_2509 0.29 -1.3 2,656,468 + Dsui_2509 0.29 +0.7 2,656,495 - Dsui_2509 0.32 -0.3 2,656,683 + Dsui_2509 0.49 +0.7 2,656,755 + Dsui_2509 0.56 +0.7 2,656,763 - Dsui_2509 0.57 +0.7 2,656,770 - Dsui_2509 0.58 +0.7 2,656,817 + Dsui_2509 0.62 +0.7 2,656,823 - Dsui_2509 0.63 +0.7 2,656,825 - Dsui_2509 0.63 +0.7 2,656,944 + Dsui_2509 0.74 -1.3 2,656,974 - Dsui_2509 0.77 -0.8 2,657,001 + Dsui_2509 0.79 +0.7 2,657,016 + Dsui_2509 0.81 +0.7 2,657,038 - Dsui_2509 0.83 +0.7 2,657,074 - Dsui_2509 0.86 +0.7 2,657,096 + Dsui_2509 0.88 -0.8 2,657,179 + +0.7 2,657,187 - -0.3 2,657,189 + -0.8 2,657,197 - -0.3 2,657,197 - +0.7 2,657,394 - +0.7 2,657,649 + Dsui_2510 0.13 -0.3 2,657,930 - Dsui_2510 0.23 -0.3 2,658,008 - Dsui_2510 0.25 -1.6 2,658,038 + Dsui_2510 0.26 +0.7 2,658,114 - Dsui_2510 0.28 -0.3 2,658,142 - Dsui_2510 0.29 +0.7 2,658,158 + Dsui_2510 0.30 +0.7 2,658,158 + Dsui_2510 0.30 +0.7 2,658,204 - Dsui_2510 0.31 -1.6 2,658,209 - Dsui_2510 0.32 +0.7 2,658,214 - Dsui_2510 0.32 +0.7
Or see this region's nucleotide sequence