Strain Fitness in Dechlorosoma suillum PS around Dsui_2242

Experiment: ALP with Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2241 and Dsui_2242 are separated by 250 nucleotidesDsui_2242 and Dsui_2243 overlap by 31 nucleotidesDsui_2243 and Dsui_2244 are separated by 6 nucleotides Dsui_2241: Dsui_2241 - OAH/OAS sulfhydrylase, at 2,388,527 to 2,389,801 _2241 Dsui_2242: Dsui_2242 - hypothetical protein, at 2,390,052 to 2,390,546 _2242 Dsui_2243: Dsui_2243 - hypothetical protein, at 2,390,516 to 2,390,797 _2243 Dsui_2244: Dsui_2244 - DNA mismatch repair protein MutS, at 2,390,804 to 2,393,407 _2244 Position (kb) 2390 2391Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2389.055 kb on + strand, within Dsui_2241at 2389.055 kb on + strandat 2389.055 kb on + strandat 2389.055 kb on + strand, within Dsui_2241at 2389.055 kb on + strand, within Dsui_2241at 2389.055 kb on + strandat 2389.064 kb on - strand, within Dsui_2241at 2389.179 kb on + strand, within Dsui_2241at 2389.286 kb on + strand, within Dsui_2241at 2389.289 kb on - strand, within Dsui_2241at 2389.318 kb on + strandat 2389.362 kb on + strandat 2389.402 kb on + strandat 2389.402 kb on + strand, within Dsui_2241at 2389.439 kb on - strand, within Dsui_2241at 2389.462 kb on + strandat 2389.462 kb on + strandat 2389.470 kb on - strand, within Dsui_2241at 2389.491 kb on - strand, within Dsui_2241at 2389.491 kb on - strand, within Dsui_2241at 2389.531 kb on - strand, within Dsui_2241at 2389.536 kb on - strand, within Dsui_2241at 2389.541 kb on - strand, within Dsui_2241at 2389.560 kb on + strandat 2389.680 kb on + strandat 2389.683 kb on - strandat 2389.683 kb on - strandat 2389.783 kb on + strandat 2389.953 kb on + strandat 2389.963 kb on + strandat 2389.974 kb on - strandat 2390.037 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.059 kb on + strandat 2390.067 kb on - strandat 2390.067 kb on - strandat 2390.193 kb on + strand, within Dsui_2242at 2390.232 kb on + strand, within Dsui_2242at 2390.256 kb on + strand, within Dsui_2242at 2390.386 kb on - strand, within Dsui_2242at 2390.560 kb on + strand, within Dsui_2243at 2390.670 kb on - strand, within Dsui_2243at 2390.732 kb on + strand, within Dsui_2243at 2390.779 kb on + strandat 2390.865 kb on - strandat 2390.899 kb on - strandat 2390.941 kb on - strandat 2390.976 kb on - strandat 2390.983 kb on + strandat 2391.015 kb on + strandat 2391.094 kb on - strand, within Dsui_2244at 2391.144 kb on + strand, within Dsui_2244at 2391.149 kb on + strand, within Dsui_2244at 2391.152 kb on - strand, within Dsui_2244at 2391.170 kb on + strandat 2391.208 kb on + strand, within Dsui_2244at 2391.208 kb on + strandat 2391.216 kb on - strand, within Dsui_2244at 2391.254 kb on + strand, within Dsui_2244at 2391.262 kb on - strand, within Dsui_2244at 2391.424 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM
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2,389,055 + Dsui_2241 0.41 +1.0
2,389,055 + +1.0
2,389,055 + +1.0
2,389,055 + Dsui_2241 0.41 +1.0
2,389,055 + Dsui_2241 0.41 -1.3
2,389,055 + -0.0
2,389,064 - Dsui_2241 0.42 -1.2
2,389,179 + Dsui_2241 0.51 -1.6
2,389,286 + Dsui_2241 0.60 -0.6
2,389,289 - Dsui_2241 0.60 -0.7
2,389,318 + +1.0
2,389,362 + +1.0
2,389,402 + +1.0
2,389,402 + Dsui_2241 0.69 -0.0
2,389,439 - Dsui_2241 0.72 -0.4
2,389,462 + +1.0
2,389,462 + +1.0
2,389,470 - Dsui_2241 0.74 +3.3
2,389,491 - Dsui_2241 0.76 +0.3
2,389,491 - Dsui_2241 0.76 -0.3
2,389,531 - Dsui_2241 0.79 -1.3
2,389,536 - Dsui_2241 0.79 -0.6
2,389,541 - Dsui_2241 0.80 +1.0
2,389,560 + +1.0
2,389,680 + -1.6
2,389,683 - -1.0
2,389,683 - +1.0
2,389,783 + -2.0
2,389,953 + +1.0
2,389,963 + -0.0
2,389,974 - -1.8
2,390,037 + +1.0
2,390,059 + -0.6
2,390,059 + -0.6
2,390,059 + -1.6
2,390,059 + -1.6
2,390,059 + +1.0
2,390,059 + -0.6
2,390,059 + +1.0
2,390,059 + -1.0
2,390,067 - +1.0
2,390,067 - +1.0
2,390,193 + Dsui_2242 0.28 -0.1
2,390,232 + Dsui_2242 0.36 -1.8
2,390,256 + Dsui_2242 0.41 -0.5
2,390,386 - Dsui_2242 0.67 -0.6
2,390,560 + Dsui_2243 0.16 -0.9
2,390,670 - Dsui_2243 0.55 -0.6
2,390,732 + Dsui_2243 0.77 -0.6
2,390,779 + -0.0
2,390,865 - +0.6
2,390,899 - +0.2
2,390,941 - -0.1
2,390,976 - +1.0
2,390,983 + -0.0
2,391,015 + +1.0
2,391,094 - Dsui_2244 0.11 -0.1
2,391,144 + Dsui_2244 0.13 -0.6
2,391,149 + Dsui_2244 0.13 -1.3
2,391,152 - Dsui_2244 0.13 -0.5
2,391,170 + -0.0
2,391,208 + Dsui_2244 0.16 -1.3
2,391,208 + +1.0
2,391,216 - Dsui_2244 0.16 +0.1
2,391,254 + Dsui_2244 0.17 +1.0
2,391,262 - Dsui_2244 0.18 +0.1
2,391,424 + +0.9

Or see this region's nucleotide sequence