Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2241 and Dsui_2242 are separated by 250 nucleotides Dsui_2242 and Dsui_2243 overlap by 31 nucleotides Dsui_2243 and Dsui_2244 are separated by 6 nucleotides
Dsui_2241: Dsui_2241 - OAH/OAS sulfhydrylase, at 2,388,527 to 2,389,801
_2241
Dsui_2242: Dsui_2242 - hypothetical protein, at 2,390,052 to 2,390,546
_2242
Dsui_2243: Dsui_2243 - hypothetical protein, at 2,390,516 to 2,390,797
_2243
Dsui_2244: Dsui_2244 - DNA mismatch repair protein MutS, at 2,390,804 to 2,393,407
_2244
Position (kb)
2390
2391 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2389.055 kb on + strand, within Dsui_2241 at 2389.055 kb on + strand at 2389.055 kb on + strand at 2389.055 kb on + strand, within Dsui_2241 at 2389.055 kb on + strand, within Dsui_2241 at 2389.055 kb on + strand at 2389.064 kb on - strand, within Dsui_2241 at 2389.179 kb on + strand, within Dsui_2241 at 2389.286 kb on + strand, within Dsui_2241 at 2389.289 kb on - strand, within Dsui_2241 at 2389.318 kb on + strand at 2389.362 kb on + strand at 2389.402 kb on + strand at 2389.402 kb on + strand, within Dsui_2241 at 2389.439 kb on - strand, within Dsui_2241 at 2389.462 kb on + strand at 2389.462 kb on + strand at 2389.470 kb on - strand, within Dsui_2241 at 2389.491 kb on - strand, within Dsui_2241 at 2389.491 kb on - strand, within Dsui_2241 at 2389.531 kb on - strand, within Dsui_2241 at 2389.536 kb on - strand, within Dsui_2241 at 2389.541 kb on - strand, within Dsui_2241 at 2389.560 kb on + strand at 2389.680 kb on + strand at 2389.683 kb on - strand at 2389.683 kb on - strand at 2389.783 kb on + strand at 2389.953 kb on + strand at 2389.963 kb on + strand at 2389.974 kb on - strand at 2390.037 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.059 kb on + strand at 2390.067 kb on - strand at 2390.067 kb on - strand at 2390.193 kb on + strand, within Dsui_2242 at 2390.232 kb on + strand, within Dsui_2242 at 2390.256 kb on + strand, within Dsui_2242 at 2390.386 kb on - strand, within Dsui_2242 at 2390.560 kb on + strand, within Dsui_2243 at 2390.670 kb on - strand, within Dsui_2243 at 2390.732 kb on + strand, within Dsui_2243 at 2390.779 kb on + strand at 2390.865 kb on - strand at 2390.899 kb on - strand at 2390.941 kb on - strand at 2390.976 kb on - strand at 2390.983 kb on + strand at 2391.015 kb on + strand at 2391.094 kb on - strand, within Dsui_2244 at 2391.144 kb on + strand, within Dsui_2244 at 2391.149 kb on + strand, within Dsui_2244 at 2391.152 kb on - strand, within Dsui_2244 at 2391.170 kb on + strand at 2391.208 kb on + strand, within Dsui_2244 at 2391.208 kb on + strand at 2391.216 kb on - strand, within Dsui_2244 at 2391.254 kb on + strand, within Dsui_2244 at 2391.262 kb on - strand, within Dsui_2244 at 2391.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 2,389,055 + Dsui_2241 0.41 +1.0 2,389,055 + +1.0 2,389,055 + +1.0 2,389,055 + Dsui_2241 0.41 +1.0 2,389,055 + Dsui_2241 0.41 -1.3 2,389,055 + -0.0 2,389,064 - Dsui_2241 0.42 -1.2 2,389,179 + Dsui_2241 0.51 -1.6 2,389,286 + Dsui_2241 0.60 -0.6 2,389,289 - Dsui_2241 0.60 -0.7 2,389,318 + +1.0 2,389,362 + +1.0 2,389,402 + +1.0 2,389,402 + Dsui_2241 0.69 -0.0 2,389,439 - Dsui_2241 0.72 -0.4 2,389,462 + +1.0 2,389,462 + +1.0 2,389,470 - Dsui_2241 0.74 +3.3 2,389,491 - Dsui_2241 0.76 +0.3 2,389,491 - Dsui_2241 0.76 -0.3 2,389,531 - Dsui_2241 0.79 -1.3 2,389,536 - Dsui_2241 0.79 -0.6 2,389,541 - Dsui_2241 0.80 +1.0 2,389,560 + +1.0 2,389,680 + -1.6 2,389,683 - -1.0 2,389,683 - +1.0 2,389,783 + -2.0 2,389,953 + +1.0 2,389,963 + -0.0 2,389,974 - -1.8 2,390,037 + +1.0 2,390,059 + -0.6 2,390,059 + -0.6 2,390,059 + -1.6 2,390,059 + -1.6 2,390,059 + +1.0 2,390,059 + -0.6 2,390,059 + +1.0 2,390,059 + -1.0 2,390,067 - +1.0 2,390,067 - +1.0 2,390,193 + Dsui_2242 0.28 -0.1 2,390,232 + Dsui_2242 0.36 -1.8 2,390,256 + Dsui_2242 0.41 -0.5 2,390,386 - Dsui_2242 0.67 -0.6 2,390,560 + Dsui_2243 0.16 -0.9 2,390,670 - Dsui_2243 0.55 -0.6 2,390,732 + Dsui_2243 0.77 -0.6 2,390,779 + -0.0 2,390,865 - +0.6 2,390,899 - +0.2 2,390,941 - -0.1 2,390,976 - +1.0 2,390,983 + -0.0 2,391,015 + +1.0 2,391,094 - Dsui_2244 0.11 -0.1 2,391,144 + Dsui_2244 0.13 -0.6 2,391,149 + Dsui_2244 0.13 -1.3 2,391,152 - Dsui_2244 0.13 -0.5 2,391,170 + -0.0 2,391,208 + Dsui_2244 0.16 -1.3 2,391,208 + +1.0 2,391,216 - Dsui_2244 0.16 +0.1 2,391,254 + Dsui_2244 0.17 +1.0 2,391,262 - Dsui_2244 0.18 +0.1 2,391,424 + +0.9
Or see this region's nucleotide sequence