Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2239 and Dsui_2240 are separated by 161 nucleotides Dsui_2240 and Dsui_2241 are separated by 238 nucleotides
Dsui_2239: Dsui_2239 - tRNA (uracil-5-)-methyltransferase, at 2,383,199 to 2,384,287
_2239
Dsui_2240: Dsui_2240 - PAS domain S-box, at 2,384,449 to 2,388,288
_2240
Dsui_2241: Dsui_2241 - OAH/OAS sulfhydrylase, at 2,388,527 to 2,389,801
_2241
Position (kb)
2384
2385
2386
2387
2388
2389 Strain fitness (log2 ratio)
-1
0
1 at 2383.475 kb on + strand at 2383.483 kb on - strand, within Dsui_2239 at 2383.483 kb on - strand, within Dsui_2239 at 2383.483 kb on - strand, within Dsui_2239 at 2383.515 kb on + strand at 2383.523 kb on - strand, within Dsui_2239 at 2383.788 kb on - strand, within Dsui_2239 at 2383.801 kb on + strand at 2383.977 kb on + strand at 2384.133 kb on + strand at 2384.365 kb on + strand at 2384.447 kb on + strand at 2384.525 kb on + strand at 2384.532 kb on - strand at 2384.533 kb on - strand at 2384.561 kb on + strand at 2384.637 kb on - strand at 2384.701 kb on + strand at 2384.775 kb on + strand at 2385.067 kb on - strand at 2385.240 kb on - strand at 2385.263 kb on + strand at 2385.277 kb on + strand at 2385.522 kb on + strand at 2385.600 kb on - strand, within Dsui_2240 at 2385.603 kb on + strand at 2385.642 kb on + strand at 2385.650 kb on - strand at 2385.721 kb on + strand at 2385.726 kb on + strand at 2386.063 kb on - strand at 2386.168 kb on - strand at 2386.401 kb on - strand at 2386.449 kb on - strand at 2386.714 kb on + strand at 2386.756 kb on + strand, within Dsui_2240 at 2386.780 kb on - strand, within Dsui_2240 at 2386.885 kb on + strand, within Dsui_2240 at 2386.957 kb on - strand at 2387.060 kb on + strand, within Dsui_2240 at 2387.102 kb on + strand at 2387.110 kb on - strand at 2387.156 kb on - strand, within Dsui_2240 at 2387.418 kb on - strand, within Dsui_2240 at 2387.424 kb on - strand at 2387.432 kb on - strand, within Dsui_2240 at 2387.465 kb on - strand, within Dsui_2240 at 2387.537 kb on - strand at 2387.540 kb on + strand, within Dsui_2240 at 2387.648 kb on - strand, within Dsui_2240 at 2387.732 kb on + strand at 2388.188 kb on + strand at 2388.225 kb on - strand at 2388.304 kb on + strand at 2388.312 kb on - strand at 2388.537 kb on + strand at 2388.537 kb on + strand at 2388.603 kb on - strand at 2388.624 kb on - strand at 2388.629 kb on - strand at 2388.653 kb on - strand at 2388.714 kb on - strand, within Dsui_2241 at 2388.799 kb on - strand, within Dsui_2241 at 2388.801 kb on + strand at 2388.886 kb on - strand, within Dsui_2241 at 2389.048 kb on + strand, within Dsui_2241 at 2389.055 kb on + strand, within Dsui_2241 at 2389.055 kb on + strand at 2389.055 kb on + strand at 2389.055 kb on + strand, within Dsui_2241 at 2389.055 kb on + strand, within Dsui_2241 at 2389.055 kb on + strand at 2389.064 kb on - strand, within Dsui_2241 at 2389.179 kb on + strand, within Dsui_2241 at 2389.286 kb on + strand, within Dsui_2241
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 2,383,475 + +1.0 2,383,483 - Dsui_2239 0.26 -1.1 2,383,483 - Dsui_2239 0.26 -0.1 2,383,483 - Dsui_2239 0.26 +0.2 2,383,515 + +1.0 2,383,523 - Dsui_2239 0.30 +0.8 2,383,788 - Dsui_2239 0.54 -0.8 2,383,801 + -0.0 2,383,977 + +1.0 2,384,133 + -0.0 2,384,365 + +1.0 2,384,447 + -0.0 2,384,525 + +1.0 2,384,532 - -1.0 2,384,533 - -0.0 2,384,561 + -0.0 2,384,637 - -0.0 2,384,701 + +1.0 2,384,775 + +1.0 2,385,067 - -0.6 2,385,240 - +1.0 2,385,263 + -0.6 2,385,277 + -0.0 2,385,522 + +1.0 2,385,600 - Dsui_2240 0.30 -0.0 2,385,603 + +1.0 2,385,642 + +1.0 2,385,650 - +1.0 2,385,721 + -0.0 2,385,726 + +1.0 2,386,063 - -0.0 2,386,168 - +1.0 2,386,401 - +1.0 2,386,449 - -0.0 2,386,714 + -0.0 2,386,756 + Dsui_2240 0.60 -0.6 2,386,780 - Dsui_2240 0.61 -1.6 2,386,885 + Dsui_2240 0.63 +1.0 2,386,957 - -0.6 2,387,060 + Dsui_2240 0.68 -0.0 2,387,102 + -0.0 2,387,110 - +1.0 2,387,156 - Dsui_2240 0.70 +1.0 2,387,418 - Dsui_2240 0.77 -0.6 2,387,424 - +1.0 2,387,432 - Dsui_2240 0.78 +1.0 2,387,465 - Dsui_2240 0.79 -0.6 2,387,537 - -0.0 2,387,540 + Dsui_2240 0.80 -0.0 2,387,648 - Dsui_2240 0.83 -0.0 2,387,732 + +1.0 2,388,188 + -1.3 2,388,225 - -0.0 2,388,304 + -1.0 2,388,312 - -0.6 2,388,537 + -0.0 2,388,537 + +1.0 2,388,603 - -1.6 2,388,624 - +0.5 2,388,629 - -0.5 2,388,653 - -0.6 2,388,714 - Dsui_2241 0.15 -0.7 2,388,799 - Dsui_2241 0.21 +0.1 2,388,801 + +1.0 2,388,886 - Dsui_2241 0.28 -0.2 2,389,048 + Dsui_2241 0.41 -0.6 2,389,055 + Dsui_2241 0.41 +1.0 2,389,055 + +1.0 2,389,055 + +1.0 2,389,055 + Dsui_2241 0.41 +1.0 2,389,055 + Dsui_2241 0.41 -1.3 2,389,055 + -0.0 2,389,064 - Dsui_2241 0.42 -1.2 2,389,179 + Dsui_2241 0.51 -1.6 2,389,286 + Dsui_2241 0.60 -0.6
Or see this region's nucleotide sequence