Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1993 and Dsui_1994 are separated by 19 nucleotides Dsui_1994 and Dsui_1995 are separated by 186 nucleotides Dsui_1995 and Dsui_1996 are separated by 67 nucleotides
Dsui_1993: Dsui_1993 - replicative DNA helicase, at 2,100,215 to 2,101,696
_1993
Dsui_1994: Dsui_1994 - NADPH-dependent FMN reductase, at 2,101,716 to 2,102,207
_1994
Dsui_1995: Dsui_1995 - transglutaminase-like enzyme, predicted cysteine protease, at 2,102,394 to 2,103,605
_1995
Dsui_1996: Dsui_1996 - PhoH family protein, at 2,103,673 to 2,105,115
_1996
Position (kb)
2102
2103
2104 Strain fitness (log2 ratio)
-2
-1
0
1 at 2101.750 kb on - strand at 2101.845 kb on - strand, within Dsui_1994 at 2101.864 kb on - strand at 2101.950 kb on + strand, within Dsui_1994 at 2102.163 kb on - strand at 2102.261 kb on - strand at 2102.923 kb on + strand at 2102.935 kb on - strand, within Dsui_1995 at 2102.942 kb on - strand, within Dsui_1995 at 2102.945 kb on + strand, within Dsui_1995 at 2102.965 kb on + strand, within Dsui_1995 at 2103.091 kb on + strand at 2103.178 kb on - strand, within Dsui_1995 at 2103.180 kb on + strand at 2103.257 kb on - strand, within Dsui_1995 at 2103.313 kb on - strand, within Dsui_1995 at 2103.345 kb on + strand, within Dsui_1995 at 2103.468 kb on - strand, within Dsui_1995 at 2103.502 kb on - strand at 2103.506 kb on + strand at 2103.638 kb on + strand at 2103.645 kb on + strand at 2103.696 kb on - strand at 2103.753 kb on - strand at 2103.776 kb on - strand at 2103.788 kb on - strand at 2103.788 kb on - strand at 2103.788 kb on - strand at 2103.805 kb on - strand at 2103.921 kb on + strand, within Dsui_1996 at 2103.998 kb on - strand, within Dsui_1996 at 2104.145 kb on - strand, within Dsui_1996 at 2104.155 kb on - strand, within Dsui_1996 at 2104.224 kb on - strand, within Dsui_1996 at 2104.226 kb on + strand, within Dsui_1996 at 2104.236 kb on + strand, within Dsui_1996 at 2104.341 kb on + strand, within Dsui_1996 at 2104.349 kb on - strand, within Dsui_1996 at 2104.395 kb on + strand, within Dsui_1996 at 2104.407 kb on - strand, within Dsui_1996 at 2104.446 kb on + strand at 2104.514 kb on - strand, within Dsui_1996 at 2104.516 kb on - strand, within Dsui_1996 at 2104.562 kb on + strand, within Dsui_1996 at 2104.562 kb on + strand at 2104.562 kb on + strand at 2104.562 kb on + strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996 at 2104.570 kb on - strand, within Dsui_1996
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 2,101,750 - +1.1 2,101,845 - Dsui_1994 0.26 -1.2 2,101,864 - +1.1 2,101,950 + Dsui_1994 0.48 -0.2 2,102,163 - +0.1 2,102,261 - -0.4 2,102,923 + -0.5 2,102,935 - Dsui_1995 0.45 +0.6 2,102,942 - Dsui_1995 0.45 +0.1 2,102,945 + Dsui_1995 0.45 +0.1 2,102,965 + Dsui_1995 0.47 +1.1 2,103,091 + +1.1 2,103,178 - Dsui_1995 0.65 +0.4 2,103,180 + -0.5 2,103,257 - Dsui_1995 0.71 +0.5 2,103,313 - Dsui_1995 0.76 +0.1 2,103,345 + Dsui_1995 0.78 -1.2 2,103,468 - Dsui_1995 0.89 +0.2 2,103,502 - +0.2 2,103,506 + +0.1 2,103,638 + -0.9 2,103,645 + +1.1 2,103,696 - -0.1 2,103,753 - -0.1 2,103,776 - -1.0 2,103,788 - -2.3 2,103,788 - -0.1 2,103,788 - -0.2 2,103,805 - -0.7 2,103,921 + Dsui_1996 0.17 +1.1 2,103,998 - Dsui_1996 0.23 -0.5 2,104,145 - Dsui_1996 0.33 -0.2 2,104,155 - Dsui_1996 0.33 -0.6 2,104,224 - Dsui_1996 0.38 -0.4 2,104,226 + Dsui_1996 0.38 -1.2 2,104,236 + Dsui_1996 0.39 -2.4 2,104,341 + Dsui_1996 0.46 +0.1 2,104,349 - Dsui_1996 0.47 +0.1 2,104,395 + Dsui_1996 0.50 -0.5 2,104,407 - Dsui_1996 0.51 -0.1 2,104,446 + +0.1 2,104,514 - Dsui_1996 0.58 -0.6 2,104,516 - Dsui_1996 0.58 -0.5 2,104,562 + Dsui_1996 0.62 -0.5 2,104,562 + +0.1 2,104,562 + +0.1 2,104,562 + Dsui_1996 0.62 +1.1 2,104,570 - Dsui_1996 0.62 +0.9 2,104,570 - Dsui_1996 0.62 -1.0 2,104,570 - Dsui_1996 0.62 -0.2
Or see this region's nucleotide sequence