Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1902 and Dsui_1903 are separated by 660 nucleotides Dsui_1903 and Dsui_1904 are separated by 611 nucleotides
Dsui_1902: Dsui_1902 - alkyl hydroperoxide reductase, F subunit, at 2,000,980 to 2,002,542
_1902
Dsui_1903: Dsui_1903 - Fe-S oxidoreductase, at 2,003,203 to 2,004,753
_1903
Dsui_1904: Dsui_1904 - aspartate/tyrosine/aromatic aminotransferase, at 2,005,365 to 2,006,561
_1904
Position (kb)
2003
2004
2005 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2002.251 kb on - strand, within Dsui_1902 at 2002.258 kb on - strand, within Dsui_1902 at 2002.329 kb on + strand, within Dsui_1902 at 2002.329 kb on + strand, within Dsui_1902 at 2002.526 kb on + strand at 2002.526 kb on + strand at 2002.526 kb on + strand at 2002.526 kb on + strand at 2002.531 kb on + strand at 2002.531 kb on + strand at 2002.582 kb on - strand at 2002.650 kb on - strand at 2002.650 kb on - strand at 2002.679 kb on - strand at 2002.776 kb on - strand at 2002.776 kb on - strand at 2002.891 kb on + strand at 2002.898 kb on - strand at 2002.919 kb on + strand at 2002.919 kb on + strand at 2002.997 kb on + strand at 2002.997 kb on + strand at 2002.997 kb on + strand at 2002.997 kb on + strand at 2003.005 kb on - strand at 2003.005 kb on - strand at 2003.005 kb on - strand at 2003.005 kb on - strand at 2003.005 kb on - strand at 2003.005 kb on - strand at 2003.005 kb on - strand at 2003.005 kb on - strand at 2003.052 kb on + strand at 2003.067 kb on + strand at 2003.098 kb on + strand at 2003.099 kb on + strand at 2003.099 kb on + strand at 2003.099 kb on + strand at 2003.099 kb on + strand at 2003.099 kb on + strand at 2003.099 kb on + strand at 2003.099 kb on + strand at 2003.107 kb on - strand at 2003.155 kb on + strand at 2003.193 kb on + strand at 2003.193 kb on + strand at 2003.193 kb on + strand at 2003.193 kb on + strand at 2003.193 kb on + strand at 2003.193 kb on + strand at 2003.193 kb on + strand at 2003.193 kb on + strand at 2003.201 kb on - strand at 2003.201 kb on - strand at 2003.201 kb on - strand at 2003.201 kb on - strand at 2003.220 kb on - strand at 2003.221 kb on + strand at 2003.229 kb on - strand at 2003.230 kb on - strand at 2003.234 kb on + strand at 2003.269 kb on - strand at 2003.306 kb on + strand at 2003.324 kb on + strand at 2003.332 kb on - strand at 2003.387 kb on + strand, within Dsui_1903 at 2003.395 kb on + strand, within Dsui_1903 at 2003.395 kb on + strand, within Dsui_1903 at 2003.403 kb on - strand at 2003.403 kb on - strand at 2003.414 kb on + strand, within Dsui_1903 at 2003.414 kb on + strand, within Dsui_1903 at 2003.416 kb on + strand at 2003.424 kb on - strand, within Dsui_1903 at 2003.451 kb on + strand, within Dsui_1903 at 2003.456 kb on + strand at 2003.507 kb on + strand, within Dsui_1903 at 2003.522 kb on + strand, within Dsui_1903 at 2003.534 kb on + strand, within Dsui_1903 at 2003.536 kb on + strand at 2003.542 kb on - strand, within Dsui_1903 at 2003.553 kb on + strand, within Dsui_1903 at 2003.583 kb on + strand, within Dsui_1903 at 2003.588 kb on + strand, within Dsui_1903 at 2003.600 kb on + strand, within Dsui_1903 at 2003.602 kb on + strand, within Dsui_1903 at 2003.602 kb on + strand, within Dsui_1903 at 2003.603 kb on - strand, within Dsui_1903 at 2003.612 kb on + strand, within Dsui_1903 at 2003.620 kb on + strand, within Dsui_1903 at 2003.620 kb on - strand, within Dsui_1903 at 2003.668 kb on - strand, within Dsui_1903 at 2003.673 kb on + strand, within Dsui_1903 at 2003.693 kb on + strand, within Dsui_1903 at 2003.748 kb on - strand, within Dsui_1903 at 2003.763 kb on + strand at 2003.763 kb on + strand, within Dsui_1903 at 2003.763 kb on + strand, within Dsui_1903 at 2003.768 kb on + strand, within Dsui_1903 at 2003.771 kb on - strand, within Dsui_1903 at 2003.773 kb on + strand, within Dsui_1903 at 2003.777 kb on + strand, within Dsui_1903 at 2003.797 kb on + strand, within Dsui_1903 at 2003.826 kb on - strand, within Dsui_1903 at 2003.940 kb on + strand, within Dsui_1903 at 2003.968 kb on + strand, within Dsui_1903 at 2003.973 kb on + strand, within Dsui_1903 at 2003.973 kb on + strand, within Dsui_1903 at 2003.976 kb on - strand, within Dsui_1903 at 2003.981 kb on - strand, within Dsui_1903 at 2004.086 kb on - strand, within Dsui_1903 at 2004.097 kb on - strand, within Dsui_1903 at 2004.097 kb on - strand, within Dsui_1903 at 2004.097 kb on - strand, within Dsui_1903 at 2004.103 kb on - strand, within Dsui_1903 at 2004.207 kb on + strand, within Dsui_1903 at 2004.215 kb on - strand at 2004.217 kb on + strand at 2004.217 kb on + strand, within Dsui_1903 at 2004.217 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.238 kb on + strand, within Dsui_1903 at 2004.244 kb on + strand, within Dsui_1903 at 2004.246 kb on - strand at 2004.246 kb on - strand at 2004.246 kb on - strand at 2004.246 kb on - strand, within Dsui_1903 at 2004.246 kb on - strand, within Dsui_1903 at 2004.246 kb on - strand, within Dsui_1903 at 2004.246 kb on - strand, within Dsui_1903 at 2004.246 kb on - strand, within Dsui_1903 at 2004.246 kb on - strand, within Dsui_1903 at 2004.246 kb on - strand, within Dsui_1903 at 2004.246 kb on - strand at 2004.246 kb on - strand, within Dsui_1903 at 2004.246 kb on - strand at 2004.246 kb on - strand, within Dsui_1903 at 2004.246 kb on - strand, within Dsui_1903 at 2004.299 kb on + strand, within Dsui_1903 at 2004.331 kb on - strand, within Dsui_1903 at 2004.376 kb on - strand, within Dsui_1903 at 2004.391 kb on - strand, within Dsui_1903 at 2004.477 kb on + strand, within Dsui_1903 at 2004.485 kb on - strand, within Dsui_1903 at 2004.539 kb on + strand, within Dsui_1903 at 2004.562 kb on - strand at 2004.634 kb on + strand at 2004.661 kb on - strand at 2004.663 kb on + strand at 2004.675 kb on + strand at 2004.683 kb on + strand at 2004.685 kb on - strand at 2004.691 kb on - strand at 2004.691 kb on - strand at 2004.691 kb on - strand at 2004.718 kb on - strand at 2004.757 kb on + strand at 2004.800 kb on + strand at 2004.844 kb on - strand at 2004.855 kb on + strand at 2004.903 kb on + strand at 2004.909 kb on + strand at 2004.909 kb on + strand at 2004.917 kb on - strand at 2004.927 kb on - strand at 2005.011 kb on + strand at 2005.050 kb on - strand at 2005.164 kb on + strand at 2005.173 kb on + strand at 2005.611 kb on - strand, within Dsui_1904
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 2,002,251 - Dsui_1902 0.81 -1.0 2,002,258 - Dsui_1902 0.82 -0.0 2,002,329 + Dsui_1902 0.86 -0.1 2,002,329 + Dsui_1902 0.86 +0.3 2,002,526 + -0.3 2,002,526 + -0.5 2,002,526 + -0.8 2,002,526 + -0.3 2,002,531 + -0.6 2,002,531 + +0.3 2,002,582 - +1.0 2,002,650 - +1.0 2,002,650 - -0.6 2,002,679 - +1.0 2,002,776 - -0.0 2,002,776 - -0.0 2,002,891 + +1.0 2,002,898 - -1.8 2,002,919 + +1.0 2,002,919 + +1.0 2,002,997 + -0.0 2,002,997 + -0.0 2,002,997 + +1.0 2,002,997 + -0.0 2,003,005 - +1.0 2,003,005 - -0.6 2,003,005 - -0.0 2,003,005 - -0.0 2,003,005 - -1.3 2,003,005 - +1.0 2,003,005 - -1.8 2,003,005 - -0.0 2,003,052 + -1.0 2,003,067 + -0.6 2,003,098 + -0.6 2,003,099 + +1.0 2,003,099 + -0.0 2,003,099 + -0.0 2,003,099 + -1.3 2,003,099 + +1.0 2,003,099 + -0.0 2,003,099 + -0.0 2,003,107 - -0.6 2,003,155 + +1.0 2,003,193 + -0.0 2,003,193 + -0.0 2,003,193 + +1.0 2,003,193 + -0.6 2,003,193 + -0.6 2,003,193 + -0.0 2,003,193 + +1.0 2,003,193 + -0.0 2,003,201 - -0.6 2,003,201 - +1.0 2,003,201 - +1.0 2,003,201 - -1.3 2,003,220 - +1.0 2,003,221 + -0.6 2,003,229 - -0.0 2,003,230 - +1.0 2,003,234 + +1.0 2,003,269 - +1.0 2,003,306 + +1.0 2,003,324 + +1.0 2,003,332 - -1.3 2,003,387 + Dsui_1903 0.12 -0.6 2,003,395 + Dsui_1903 0.12 +1.0 2,003,395 + Dsui_1903 0.12 -1.3 2,003,403 - +1.0 2,003,403 - -0.6 2,003,414 + Dsui_1903 0.14 -0.6 2,003,414 + Dsui_1903 0.14 -0.0 2,003,416 + +1.0 2,003,424 - Dsui_1903 0.14 -1.0 2,003,451 + Dsui_1903 0.16 -0.4 2,003,456 + +1.0 2,003,507 + Dsui_1903 0.20 +1.0 2,003,522 + Dsui_1903 0.21 -0.6 2,003,534 + Dsui_1903 0.21 +1.0 2,003,536 + +1.0 2,003,542 - Dsui_1903 0.22 -0.6 2,003,553 + Dsui_1903 0.23 +1.0 2,003,583 + Dsui_1903 0.25 -0.0 2,003,588 + Dsui_1903 0.25 -0.0 2,003,600 + Dsui_1903 0.26 -0.6 2,003,602 + Dsui_1903 0.26 -0.0 2,003,602 + Dsui_1903 0.26 -0.6 2,003,603 - Dsui_1903 0.26 +1.0 2,003,612 + Dsui_1903 0.26 -0.0 2,003,620 + Dsui_1903 0.27 +1.0 2,003,620 - Dsui_1903 0.27 -1.6 2,003,668 - Dsui_1903 0.30 +1.0 2,003,673 + Dsui_1903 0.30 -0.0 2,003,693 + Dsui_1903 0.32 +1.0 2,003,748 - Dsui_1903 0.35 -0.6 2,003,763 + +1.0 2,003,763 + Dsui_1903 0.36 +1.0 2,003,763 + Dsui_1903 0.36 -0.6 2,003,768 + Dsui_1903 0.36 -1.3 2,003,771 - Dsui_1903 0.37 -0.0 2,003,773 + Dsui_1903 0.37 +1.0 2,003,777 + Dsui_1903 0.37 -0.6 2,003,797 + Dsui_1903 0.38 +1.0 2,003,826 - Dsui_1903 0.40 +1.0 2,003,940 + Dsui_1903 0.48 +1.0 2,003,968 + Dsui_1903 0.49 -0.0 2,003,973 + Dsui_1903 0.50 -1.3 2,003,973 + Dsui_1903 0.50 -0.0 2,003,976 - Dsui_1903 0.50 +1.0 2,003,981 - Dsui_1903 0.50 +1.0 2,004,086 - Dsui_1903 0.57 -0.0 2,004,097 - Dsui_1903 0.58 -0.6 2,004,097 - Dsui_1903 0.58 -0.0 2,004,097 - Dsui_1903 0.58 +1.0 2,004,103 - Dsui_1903 0.58 +1.0 2,004,207 + Dsui_1903 0.65 -1.0 2,004,215 - -0.6 2,004,217 + -0.0 2,004,217 + Dsui_1903 0.65 -0.6 2,004,217 + Dsui_1903 0.65 -1.3 2,004,238 + Dsui_1903 0.67 -1.6 2,004,238 + Dsui_1903 0.67 +1.0 2,004,238 + Dsui_1903 0.67 -0.0 2,004,238 + Dsui_1903 0.67 +1.0 2,004,238 + Dsui_1903 0.67 -0.0 2,004,238 + Dsui_1903 0.67 -0.6 2,004,238 + Dsui_1903 0.67 +1.0 2,004,238 + Dsui_1903 0.67 -0.0 2,004,238 + Dsui_1903 0.67 -0.6 2,004,238 + Dsui_1903 0.67 +1.0 2,004,238 + Dsui_1903 0.67 +1.0 2,004,238 + Dsui_1903 0.67 +1.0 2,004,238 + Dsui_1903 0.67 -1.8 2,004,244 + Dsui_1903 0.67 -0.6 2,004,246 - +1.0 2,004,246 - +1.0 2,004,246 - +1.0 2,004,246 - Dsui_1903 0.67 -1.3 2,004,246 - Dsui_1903 0.67 -0.0 2,004,246 - Dsui_1903 0.67 +1.0 2,004,246 - Dsui_1903 0.67 +1.0 2,004,246 - Dsui_1903 0.67 -0.3 2,004,246 - Dsui_1903 0.67 -1.8 2,004,246 - Dsui_1903 0.67 -0.0 2,004,246 - +1.0 2,004,246 - Dsui_1903 0.67 -1.3 2,004,246 - +1.0 2,004,246 - Dsui_1903 0.67 +1.0 2,004,246 - Dsui_1903 0.67 -0.0 2,004,299 + Dsui_1903 0.71 +1.0 2,004,331 - Dsui_1903 0.73 -1.3 2,004,376 - Dsui_1903 0.76 +1.0 2,004,391 - Dsui_1903 0.77 -1.3 2,004,477 + Dsui_1903 0.82 +1.0 2,004,485 - Dsui_1903 0.83 +1.0 2,004,539 + Dsui_1903 0.86 -0.0 2,004,562 - -0.0 2,004,634 + -0.2 2,004,661 - -1.6 2,004,663 + -0.0 2,004,675 + +1.0 2,004,683 + -1.0 2,004,685 - -0.6 2,004,691 - -1.6 2,004,691 - -1.4 2,004,691 - -0.0 2,004,718 - +1.0 2,004,757 + +1.0 2,004,800 + +1.0 2,004,844 - +1.0 2,004,855 + +2.6 2,004,903 + -1.0 2,004,909 + -1.3 2,004,909 + +1.0 2,004,917 - -0.0 2,004,927 - -0.0 2,005,011 + +0.0 2,005,050 - +1.0 2,005,164 + +0.0 2,005,173 + -1.0 2,005,611 - Dsui_1904 0.21 -0.4
Or see this region's nucleotide sequence