Strain Fitness in Dechlorosoma suillum PS around Dsui_1885

Experiment: ALP with Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1884 and Dsui_1885 are separated by 13 nucleotidesDsui_1885 and Dsui_1886 overlap by 8 nucleotides Dsui_1884: Dsui_1884 - histidine kinase, at 1,982,664 to 1,983,827 _1884 Dsui_1885: Dsui_1885 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,983,841 to 1,984,383 _1885 Dsui_1886: Dsui_1886 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,984,376 to 1,985,689 _1886 Position (kb) 1983 1984 1985Strain fitness (log2 ratio) -2 -1 0 1at 1982.849 kb on - strand, within Dsui_1884at 1983.040 kb on - strand, within Dsui_1884at 1983.136 kb on + strand, within Dsui_1884at 1983.293 kb on + strandat 1983.421 kb on + strand, within Dsui_1884at 1983.435 kb on - strand, within Dsui_1884at 1983.634 kb on - strand, within Dsui_1884at 1984.038 kb on - strand, within Dsui_1885at 1984.043 kb on - strand, within Dsui_1885at 1984.083 kb on - strand, within Dsui_1885at 1984.091 kb on + strand, within Dsui_1885at 1984.223 kb on - strand, within Dsui_1885at 1984.243 kb on - strand, within Dsui_1885at 1984.256 kb on + strand, within Dsui_1885at 1984.406 kb on + strandat 1984.520 kb on + strand, within Dsui_1886at 1984.673 kb on + strandat 1984.680 kb on - strand, within Dsui_1886at 1984.680 kb on - strand, within Dsui_1886at 1984.737 kb on + strand, within Dsui_1886at 1984.809 kb on - strand, within Dsui_1886at 1984.848 kb on - strand, within Dsui_1886at 1984.929 kb on - strand, within Dsui_1886at 1985.011 kb on + strandat 1985.162 kb on - strand, within Dsui_1886at 1985.190 kb on - strand, within Dsui_1886at 1985.190 kb on - strand, within Dsui_1886at 1985.195 kb on + strand, within Dsui_1886at 1985.293 kb on - strand, within Dsui_1886at 1985.366 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM
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1,982,849 - Dsui_1884 0.16 -0.3
1,983,040 - Dsui_1884 0.32 -1.6
1,983,136 + Dsui_1884 0.41 -1.3
1,983,293 + +1.0
1,983,421 + Dsui_1884 0.65 -0.6
1,983,435 - Dsui_1884 0.66 -2.0
1,983,634 - Dsui_1884 0.83 -0.0
1,984,038 - Dsui_1885 0.36 -1.0
1,984,043 - Dsui_1885 0.37 -0.6
1,984,083 - Dsui_1885 0.45 +1.0
1,984,091 + Dsui_1885 0.46 +1.0
1,984,223 - Dsui_1885 0.70 -1.3
1,984,243 - Dsui_1885 0.74 +1.0
1,984,256 + Dsui_1885 0.76 -0.0
1,984,406 + +1.0
1,984,520 + Dsui_1886 0.11 -1.6
1,984,673 + +1.0
1,984,680 - Dsui_1886 0.23 -1.3
1,984,680 - Dsui_1886 0.23 +0.2
1,984,737 + Dsui_1886 0.27 +1.0
1,984,809 - Dsui_1886 0.33 -0.6
1,984,848 - Dsui_1886 0.36 -2.0
1,984,929 - Dsui_1886 0.42 -0.7
1,985,011 + +1.0
1,985,162 - Dsui_1886 0.60 -0.3
1,985,190 - Dsui_1886 0.62 -0.0
1,985,190 - Dsui_1886 0.62 -1.0
1,985,195 + Dsui_1886 0.62 +1.0
1,985,293 - Dsui_1886 0.70 -0.6
1,985,366 + +1.0

Or see this region's nucleotide sequence