Strain Fitness in Dechlorosoma suillum PS around Dsui_1870

Experiment: ALP with Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1868 and Dsui_1869 are separated by 322 nucleotidesDsui_1869 and Dsui_1870 are separated by 130 nucleotidesDsui_1870 and Dsui_1871 overlap by 4 nucleotides Dsui_1868: Dsui_1868 - HD-GYP domain-containing protein, at 1,964,363 to 1,965,607 _1868 Dsui_1869: Dsui_1869 - hypothetical protein, at 1,965,930 to 1,966,208 _1869 Dsui_1870: Dsui_1870 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 1,966,339 to 1,967,841 _1870 Dsui_1871: Dsui_1871 - hydrophobe/amphiphile efflux-1 (HAE1) family transporter, at 1,967,838 to 1,970,972 _1871 Position (kb) 1966 1967 1968Strain fitness (log2 ratio) -2 -1 0 1 2at 1965.392 kb on + strand, within Dsui_1868at 1965.443 kb on - strandat 1965.708 kb on - strandat 1965.712 kb on + strandat 1965.753 kb on - strandat 1965.872 kb on + strandat 1965.920 kb on + strandat 1965.944 kb on + strandat 1965.961 kb on + strand, within Dsui_1869at 1966.004 kb on + strand, within Dsui_1869at 1966.083 kb on + strand, within Dsui_1869at 1966.113 kb on + strand, within Dsui_1869at 1966.349 kb on + strandat 1966.349 kb on + strandat 1966.432 kb on - strandat 1966.436 kb on + strandat 1966.459 kb on + strandat 1966.468 kb on + strandat 1966.494 kb on + strand, within Dsui_1870at 1966.564 kb on + strand, within Dsui_1870at 1966.686 kb on - strand, within Dsui_1870at 1966.724 kb on + strand, within Dsui_1870at 1966.724 kb on + strandat 1966.724 kb on + strand, within Dsui_1870at 1966.732 kb on - strand, within Dsui_1870at 1966.732 kb on - strand, within Dsui_1870at 1966.732 kb on - strand, within Dsui_1870at 1966.734 kb on + strand, within Dsui_1870at 1966.872 kb on + strand, within Dsui_1870at 1966.872 kb on + strand, within Dsui_1870at 1966.880 kb on - strand, within Dsui_1870at 1966.884 kb on - strand, within Dsui_1870at 1967.100 kb on + strand, within Dsui_1870at 1967.116 kb on - strand, within Dsui_1870at 1967.197 kb on + strand, within Dsui_1870at 1967.205 kb on - strand, within Dsui_1870at 1967.265 kb on + strand, within Dsui_1870at 1967.265 kb on + strand, within Dsui_1870at 1967.273 kb on - strand, within Dsui_1870at 1967.273 kb on - strand, within Dsui_1870at 1967.465 kb on + strandat 1967.492 kb on + strand, within Dsui_1870at 1967.557 kb on - strandat 1967.567 kb on - strand, within Dsui_1870at 1967.584 kb on - strand, within Dsui_1870at 1967.770 kb on + strandat 1967.778 kb on - strandat 1967.811 kb on - strandat 1967.862 kb on - strandat 1967.964 kb on - strandat 1968.141 kb on + strandat 1968.156 kb on - strand, within Dsui_1871at 1968.353 kb on - strand, within Dsui_1871at 1968.416 kb on - strand, within Dsui_1871at 1968.446 kb on + strand, within Dsui_1871at 1968.490 kb on + strandat 1968.490 kb on + strand, within Dsui_1871at 1968.522 kb on - strand, within Dsui_1871at 1968.557 kb on + strandat 1968.565 kb on - strand, within Dsui_1871at 1968.580 kb on + strand, within Dsui_1871at 1968.593 kb on - strand, within Dsui_1871at 1968.613 kb on - strand, within Dsui_1871at 1968.613 kb on - strand, within Dsui_1871at 1968.628 kb on + strand, within Dsui_1871at 1968.629 kb on + strandat 1968.676 kb on + strand, within Dsui_1871at 1968.725 kb on + strand, within Dsui_1871at 1968.732 kb on - strand, within Dsui_1871at 1968.795 kb on - strand, within Dsui_1871at 1968.824 kb on + strand, within Dsui_1871

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM
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1,965,392 + Dsui_1868 0.83 -0.9
1,965,443 - -1.1
1,965,708 - -0.1
1,965,712 + +0.1
1,965,753 - +0.9
1,965,872 + -0.2
1,965,920 + +0.0
1,965,944 + -0.2
1,965,961 + Dsui_1869 0.11 -0.0
1,966,004 + Dsui_1869 0.27 +0.0
1,966,083 + Dsui_1869 0.55 +0.0
1,966,113 + Dsui_1869 0.66 -0.3
1,966,349 + +0.6
1,966,349 + -0.5
1,966,432 - +0.9
1,966,436 + -0.1
1,966,459 + -2.2
1,966,468 + +0.6
1,966,494 + Dsui_1870 0.10 -0.7
1,966,564 + Dsui_1870 0.15 -0.4
1,966,686 - Dsui_1870 0.23 -2.3
1,966,724 + Dsui_1870 0.26 -0.7
1,966,724 + +0.9
1,966,724 + Dsui_1870 0.26 -0.1
1,966,732 - Dsui_1870 0.26 -1.1
1,966,732 - Dsui_1870 0.26 +0.5
1,966,732 - Dsui_1870 0.26 -1.0
1,966,734 + Dsui_1870 0.26 -1.7
1,966,872 + Dsui_1870 0.35 -0.1
1,966,872 + Dsui_1870 0.35 -1.4
1,966,880 - Dsui_1870 0.36 -1.8
1,966,884 - Dsui_1870 0.36 -0.1
1,967,100 + Dsui_1870 0.51 -1.4
1,967,116 - Dsui_1870 0.52 -0.9
1,967,197 + Dsui_1870 0.57 +0.9
1,967,205 - Dsui_1870 0.58 -0.7
1,967,265 + Dsui_1870 0.62 -0.1
1,967,265 + Dsui_1870 0.62 -0.7
1,967,273 - Dsui_1870 0.62 +0.1
1,967,273 - Dsui_1870 0.62 -0.6
1,967,465 + +0.9
1,967,492 + Dsui_1870 0.77 -1.1
1,967,557 - -0.1
1,967,567 - Dsui_1870 0.82 -1.1
1,967,584 - Dsui_1870 0.83 +1.5
1,967,770 + +0.9
1,967,778 - +0.9
1,967,811 - +2.1
1,967,862 - +0.9
1,967,964 - -0.1
1,968,141 + +0.9
1,968,156 - Dsui_1871 0.10 -0.1
1,968,353 - Dsui_1871 0.16 -1.4
1,968,416 - Dsui_1871 0.18 -2.4
1,968,446 + Dsui_1871 0.19 -0.1
1,968,490 + +0.9
1,968,490 + Dsui_1871 0.21 -1.1
1,968,522 - Dsui_1871 0.22 -1.9
1,968,557 + -0.1
1,968,565 - Dsui_1871 0.23 -1.4
1,968,580 + Dsui_1871 0.24 -0.7
1,968,593 - Dsui_1871 0.24 -0.2
1,968,613 - Dsui_1871 0.25 -0.7
1,968,613 - Dsui_1871 0.25 -0.5
1,968,628 + Dsui_1871 0.25 -0.1
1,968,629 + +0.9
1,968,676 + Dsui_1871 0.27 +0.9
1,968,725 + Dsui_1871 0.28 +0.9
1,968,732 - Dsui_1871 0.29 -0.8
1,968,795 - Dsui_1871 0.31 +1.5
1,968,824 + Dsui_1871 0.31 -0.1

Or see this region's nucleotide sequence