Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1573 and Dsui_1574 are separated by 82 nucleotides Dsui_1574 and Dsui_1575 are separated by 64 nucleotides Dsui_1575 and Dsui_1576 are separated by 160 nucleotides
Dsui_1573: Dsui_1573 - phosphate transport system regulatory protein PhoU, at 1,645,438 to 1,646,148
_1573
Dsui_1574: Dsui_1574 - ribose 5-phosphate isomerase, at 1,646,231 to 1,646,902
_1574
Dsui_1575: Dsui_1575 - hypothetical protein, at 1,646,967 to 1,648,655
_1575
Dsui_1576: Dsui_1576 - dihydrolipoamide dehydrogenase, at 1,648,816 to 1,650,561
_1576
Position (kb)
1646
1647
1648
1649 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1646.174 kb on - strand at 1646.236 kb on + strand at 1646.254 kb on + strand at 1647.083 kb on + strand at 1647.127 kb on - strand at 1647.259 kb on + strand, within Dsui_1575 at 1647.262 kb on - strand, within Dsui_1575 at 1647.267 kb on - strand, within Dsui_1575 at 1647.342 kb on - strand, within Dsui_1575 at 1647.423 kb on + strand, within Dsui_1575 at 1647.529 kb on + strand, within Dsui_1575 at 1647.566 kb on + strand, within Dsui_1575 at 1647.567 kb on + strand, within Dsui_1575 at 1647.689 kb on + strand, within Dsui_1575 at 1647.726 kb on + strand, within Dsui_1575 at 1647.786 kb on + strand, within Dsui_1575 at 1647.823 kb on - strand, within Dsui_1575 at 1647.884 kb on + strand, within Dsui_1575 at 1647.932 kb on + strand, within Dsui_1575 at 1647.932 kb on + strand, within Dsui_1575 at 1647.961 kb on + strand, within Dsui_1575 at 1648.015 kb on - strand, within Dsui_1575 at 1648.030 kb on + strand, within Dsui_1575 at 1648.040 kb on + strand, within Dsui_1575 at 1648.055 kb on + strand, within Dsui_1575 at 1648.083 kb on - strand, within Dsui_1575 at 1648.096 kb on + strand, within Dsui_1575 at 1648.096 kb on + strand, within Dsui_1575 at 1648.178 kb on + strand, within Dsui_1575 at 1648.186 kb on + strand, within Dsui_1575 at 1648.218 kb on - strand, within Dsui_1575 at 1648.248 kb on + strand, within Dsui_1575 at 1648.257 kb on + strand, within Dsui_1575 at 1648.296 kb on + strand at 1648.321 kb on - strand, within Dsui_1575 at 1648.328 kb on + strand, within Dsui_1575 at 1648.328 kb on + strand, within Dsui_1575 at 1648.416 kb on + strand, within Dsui_1575 at 1648.528 kb on + strand at 1648.533 kb on - strand at 1648.613 kb on - strand at 1648.639 kb on - strand at 1648.639 kb on - strand at 1648.660 kb on - strand at 1648.660 kb on - strand at 1648.680 kb on - strand at 1648.721 kb on + strand at 1648.721 kb on + strand at 1648.804 kb on - strand at 1649.184 kb on - strand, within Dsui_1576 at 1649.184 kb on - strand, within Dsui_1576
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 1,646,174 - -0.8 1,646,236 + -0.9 1,646,254 + -0.9 1,647,083 + -1.6 1,647,127 - -0.3 1,647,259 + Dsui_1575 0.17 +0.7 1,647,262 - Dsui_1575 0.17 -0.3 1,647,267 - Dsui_1575 0.18 -0.3 1,647,342 - Dsui_1575 0.22 -0.2 1,647,423 + Dsui_1575 0.27 +0.7 1,647,529 + Dsui_1575 0.33 -0.3 1,647,566 + Dsui_1575 0.35 -0.3 1,647,567 + Dsui_1575 0.36 -1.3 1,647,689 + Dsui_1575 0.43 -0.3 1,647,726 + Dsui_1575 0.45 +0.7 1,647,786 + Dsui_1575 0.48 +0.7 1,647,823 - Dsui_1575 0.51 -0.6 1,647,884 + Dsui_1575 0.54 +0.7 1,647,932 + Dsui_1575 0.57 -0.9 1,647,932 + Dsui_1575 0.57 -0.9 1,647,961 + Dsui_1575 0.59 -0.3 1,648,015 - Dsui_1575 0.62 -0.3 1,648,030 + Dsui_1575 0.63 +0.7 1,648,040 + Dsui_1575 0.64 +0.7 1,648,055 + Dsui_1575 0.64 -2.1 1,648,083 - Dsui_1575 0.66 -0.2 1,648,096 + Dsui_1575 0.67 +0.7 1,648,096 + Dsui_1575 0.67 -0.9 1,648,178 + Dsui_1575 0.72 -2.5 1,648,186 + Dsui_1575 0.72 -3.0 1,648,218 - Dsui_1575 0.74 -0.9 1,648,248 + Dsui_1575 0.76 -0.9 1,648,257 + Dsui_1575 0.76 -0.9 1,648,296 + +0.7 1,648,321 - Dsui_1575 0.80 -0.6 1,648,328 + Dsui_1575 0.81 -1.3 1,648,328 + Dsui_1575 0.81 -0.3 1,648,416 + Dsui_1575 0.86 -0.3 1,648,528 + -1.3 1,648,533 - -0.5 1,648,613 - -0.7 1,648,639 - -0.6 1,648,639 - -0.5 1,648,660 - -0.2 1,648,660 - -0.5 1,648,680 - -0.9 1,648,721 + +0.7 1,648,721 + -0.9 1,648,804 - -0.1 1,649,184 - Dsui_1576 0.21 -1.1 1,649,184 - Dsui_1576 0.21 -0.7
Or see this region's nucleotide sequence