Strain Fitness in Dechlorosoma suillum PS around Dsui_1467

Experiment: ALP with Cobalt chloride 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1466 and Dsui_1467 are separated by 2 nucleotidesDsui_1467 and Dsui_1468 are separated by 48 nucleotides Dsui_1466: Dsui_1466 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,528,845 to 1,530,005 _1466 Dsui_1467: Dsui_1467 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,530,008 to 1,531,186 _1467 Dsui_1468: Dsui_1468 - hypothetical protein, at 1,531,235 to 1,532,614 _1468 Position (kb) 1530 1531 1532Strain fitness (log2 ratio) -2 -1 0 1at 1529.049 kb on + strand, within Dsui_1466at 1529.057 kb on - strand, within Dsui_1466at 1529.057 kb on - strand, within Dsui_1466at 1529.087 kb on + strand, within Dsui_1466at 1529.087 kb on + strand, within Dsui_1466at 1529.096 kb on - strand, within Dsui_1466at 1529.176 kb on + strand, within Dsui_1466at 1529.176 kb on + strand, within Dsui_1466at 1529.186 kb on + strand, within Dsui_1466at 1529.223 kb on + strand, within Dsui_1466at 1529.306 kb on + strand, within Dsui_1466at 1529.473 kb on - strand, within Dsui_1466at 1529.555 kb on - strand, within Dsui_1466at 1529.675 kb on + strand, within Dsui_1466at 1529.681 kb on + strand, within Dsui_1466at 1529.839 kb on + strand, within Dsui_1466at 1529.893 kb on + strandat 1529.900 kb on + strandat 1530.034 kb on + strandat 1530.047 kb on - strandat 1530.089 kb on - strandat 1530.179 kb on - strand, within Dsui_1467at 1530.393 kb on + strand, within Dsui_1467at 1530.537 kb on + strand, within Dsui_1467at 1530.545 kb on - strand, within Dsui_1467at 1530.545 kb on - strand, within Dsui_1467at 1530.586 kb on + strand, within Dsui_1467at 1530.595 kb on - strand, within Dsui_1467at 1530.742 kb on + strand, within Dsui_1467at 1530.750 kb on - strand, within Dsui_1467at 1530.775 kb on + strand, within Dsui_1467at 1530.800 kb on - strand, within Dsui_1467at 1530.880 kb on + strand, within Dsui_1467at 1530.904 kb on - strandat 1530.996 kb on - strand, within Dsui_1467at 1531.006 kb on - strandat 1531.056 kb on + strand, within Dsui_1467at 1531.113 kb on - strandat 1531.145 kb on - strandat 1531.190 kb on + strandat 1531.197 kb on + strandat 1531.197 kb on + strandat 1531.293 kb on + strandat 1531.384 kb on + strand, within Dsui_1468at 1531.433 kb on - strand, within Dsui_1468at 1531.561 kb on + strand, within Dsui_1468at 1531.650 kb on + strand, within Dsui_1468at 1531.650 kb on + strand, within Dsui_1468at 1531.650 kb on + strand, within Dsui_1468at 1531.650 kb on + strand, within Dsui_1468at 1531.650 kb on + strand, within Dsui_1468at 1531.650 kb on + strand, within Dsui_1468at 1531.650 kb on + strand, within Dsui_1468at 1531.650 kb on + strand, within Dsui_1468at 1531.650 kb on + strand, within Dsui_1468at 1531.653 kb on - strand, within Dsui_1468at 1531.658 kb on - strand, within Dsui_1468at 1531.658 kb on - strand, within Dsui_1468at 1531.658 kb on - strand, within Dsui_1468at 1531.861 kb on + strand, within Dsui_1468at 1531.861 kb on + strand, within Dsui_1468at 1531.899 kb on - strand, within Dsui_1468at 1531.909 kb on + strand, within Dsui_1468at 1531.912 kb on - strand, within Dsui_1468

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM
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1,529,049 + Dsui_1466 0.18 -0.3
1,529,057 - Dsui_1466 0.18 +0.7
1,529,057 - Dsui_1466 0.18 -0.3
1,529,087 + Dsui_1466 0.21 -0.3
1,529,087 + Dsui_1466 0.21 -0.9
1,529,096 - Dsui_1466 0.22 -0.9
1,529,176 + Dsui_1466 0.29 -0.4
1,529,176 + Dsui_1466 0.29 -1.2
1,529,186 + Dsui_1466 0.29 -0.9
1,529,223 + Dsui_1466 0.33 -1.1
1,529,306 + Dsui_1466 0.40 +0.3
1,529,473 - Dsui_1466 0.54 -0.3
1,529,555 - Dsui_1466 0.61 -0.9
1,529,675 + Dsui_1466 0.71 -1.9
1,529,681 + Dsui_1466 0.72 +0.3
1,529,839 + Dsui_1466 0.86 -0.3
1,529,893 + -1.3
1,529,900 + -1.1
1,530,034 + -1.1
1,530,047 - -1.3
1,530,089 - -0.9
1,530,179 - Dsui_1467 0.15 +0.7
1,530,393 + Dsui_1467 0.33 -1.6
1,530,537 + Dsui_1467 0.45 -1.8
1,530,545 - Dsui_1467 0.46 +0.7
1,530,545 - Dsui_1467 0.46 -0.3
1,530,586 + Dsui_1467 0.49 -1.3
1,530,595 - Dsui_1467 0.50 -0.3
1,530,742 + Dsui_1467 0.62 -0.6
1,530,750 - Dsui_1467 0.63 -0.9
1,530,775 + Dsui_1467 0.65 -0.9
1,530,800 - Dsui_1467 0.67 -0.3
1,530,880 + Dsui_1467 0.74 -0.6
1,530,904 - +0.7
1,530,996 - Dsui_1467 0.84 -0.3
1,531,006 - +0.7
1,531,056 + Dsui_1467 0.89 -0.9
1,531,113 - +0.7
1,531,145 - +0.7
1,531,190 + +1.7
1,531,197 + -0.4
1,531,197 + -0.9
1,531,293 + -1.0
1,531,384 + Dsui_1468 0.11 -0.6
1,531,433 - Dsui_1468 0.14 -1.9
1,531,561 + Dsui_1468 0.24 -0.4
1,531,650 + Dsui_1468 0.30 -1.8
1,531,650 + Dsui_1468 0.30 -0.0
1,531,650 + Dsui_1468 0.30 -0.7
1,531,650 + Dsui_1468 0.30 -0.6
1,531,650 + Dsui_1468 0.30 -0.5
1,531,650 + Dsui_1468 0.30 -1.0
1,531,650 + Dsui_1468 0.30 +0.1
1,531,650 + Dsui_1468 0.30 +0.0
1,531,650 + Dsui_1468 0.30 -0.7
1,531,653 - Dsui_1468 0.30 -0.3
1,531,658 - Dsui_1468 0.31 -1.6
1,531,658 - Dsui_1468 0.31 -0.9
1,531,658 - Dsui_1468 0.31 -0.9
1,531,861 + Dsui_1468 0.45 -0.5
1,531,861 + Dsui_1468 0.45 -0.4
1,531,899 - Dsui_1468 0.48 +0.7
1,531,909 + Dsui_1468 0.49 +0.2
1,531,912 - Dsui_1468 0.49 -0.3

Or see this region's nucleotide sequence