Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0880 and Dsui_0881 are separated by 21 nucleotides Dsui_0881 and Dsui_0882 are separated by 189 nucleotides Dsui_0882 and Dsui_0883 are separated by 215 nucleotides
Dsui_0880: Dsui_0880 - Bacterial regulatory protein, Fis family, at 892,302 to 892,619
_0880
Dsui_0881: Dsui_0881 - cAMP-binding protein, at 892,641 to 893,348
_0881
Dsui_0882: Dsui_0882 - nitrous oxide reductase, at 893,538 to 895,835
_0882
Dsui_0883: Dsui_0883 - transcriptional regulator with HTH domain and aminotransferase domain, at 896,051 to 897,478
_0883
Position (kb)
893
894
895
896 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 892.575 kb on - strand, within Dsui_0880 at 892.590 kb on + strand at 892.686 kb on - strand at 892.693 kb on + strand at 892.719 kb on + strand, within Dsui_0881 at 892.743 kb on + strand, within Dsui_0881 at 892.751 kb on - strand, within Dsui_0881 at 892.758 kb on + strand, within Dsui_0881 at 892.771 kb on - strand at 892.787 kb on - strand, within Dsui_0881 at 892.821 kb on - strand, within Dsui_0881 at 892.876 kb on - strand, within Dsui_0881 at 892.900 kb on - strand, within Dsui_0881 at 892.921 kb on + strand, within Dsui_0881 at 892.929 kb on + strand, within Dsui_0881 at 893.065 kb on - strand, within Dsui_0881 at 893.147 kb on + strand, within Dsui_0881 at 893.155 kb on - strand, within Dsui_0881 at 893.171 kb on + strand, within Dsui_0881 at 893.227 kb on + strand, within Dsui_0881 at 893.252 kb on + strand, within Dsui_0881 at 893.260 kb on - strand, within Dsui_0881 at 893.284 kb on - strand at 893.291 kb on - strand at 893.323 kb on + strand at 893.331 kb on - strand at 893.342 kb on + strand at 893.343 kb on + strand at 893.350 kb on - strand at 893.351 kb on - strand at 893.351 kb on - strand at 893.395 kb on - strand at 893.486 kb on + strand at 893.526 kb on + strand at 893.580 kb on - strand at 893.645 kb on - strand at 893.694 kb on - strand at 893.724 kb on + strand at 893.854 kb on - strand, within Dsui_0882 at 893.867 kb on + strand, within Dsui_0882 at 894.074 kb on + strand at 894.074 kb on + strand, within Dsui_0882 at 894.082 kb on - strand at 894.082 kb on - strand at 894.142 kb on + strand, within Dsui_0882 at 894.150 kb on - strand, within Dsui_0882 at 894.160 kb on - strand, within Dsui_0882 at 894.474 kb on - strand, within Dsui_0882 at 894.691 kb on + strand, within Dsui_0882 at 894.707 kb on + strand, within Dsui_0882 at 894.707 kb on + strand, within Dsui_0882 at 894.707 kb on + strand, within Dsui_0882 at 894.715 kb on - strand, within Dsui_0882 at 894.715 kb on - strand, within Dsui_0882 at 894.757 kb on - strand, within Dsui_0882 at 894.771 kb on + strand, within Dsui_0882 at 894.771 kb on + strand at 894.771 kb on + strand, within Dsui_0882 at 894.789 kb on - strand, within Dsui_0882 at 894.789 kb on - strand, within Dsui_0882 at 894.812 kb on + strand, within Dsui_0882 at 894.834 kb on - strand, within Dsui_0882 at 894.851 kb on + strand, within Dsui_0882 at 894.869 kb on + strand at 894.956 kb on + strand, within Dsui_0882 at 894.960 kb on - strand, within Dsui_0882 at 895.049 kb on + strand, within Dsui_0882 at 895.051 kb on - strand, within Dsui_0882 at 895.134 kb on - strand, within Dsui_0882 at 895.184 kb on + strand, within Dsui_0882 at 895.205 kb on - strand, within Dsui_0882 at 895.244 kb on + strand, within Dsui_0882 at 895.279 kb on - strand, within Dsui_0882 at 895.282 kb on + strand, within Dsui_0882 at 895.282 kb on + strand, within Dsui_0882 at 895.282 kb on + strand at 895.852 kb on + strand at 895.950 kb on - strand at 895.954 kb on + strand at 895.955 kb on + strand at 896.037 kb on - strand at 896.040 kb on + strand at 896.050 kb on - strand at 896.050 kb on - strand at 896.050 kb on - strand at 896.075 kb on + strand at 896.132 kb on + strand at 896.224 kb on + strand, within Dsui_0883 at 896.227 kb on - strand, within Dsui_0883 at 896.232 kb on - strand, within Dsui_0883 at 896.232 kb on - strand, within Dsui_0883 at 896.251 kb on + strand, within Dsui_0883 at 896.274 kb on + strand, within Dsui_0883 at 896.282 kb on - strand, within Dsui_0883 at 896.282 kb on - strand, within Dsui_0883 at 896.339 kb on + strand at 896.451 kb on - strand, within Dsui_0883 at 896.463 kb on - strand, within Dsui_0883 at 896.526 kb on - strand, within Dsui_0883 at 896.526 kb on - strand, within Dsui_0883 at 896.559 kb on - strand at 896.559 kb on - strand, within Dsui_0883 at 896.559 kb on - strand, within Dsui_0883 at 896.574 kb on + strand at 896.574 kb on + strand at 896.683 kb on - strand, within Dsui_0883 at 896.742 kb on - strand, within Dsui_0883 at 896.771 kb on - strand, within Dsui_0883 at 896.776 kb on - strand, within Dsui_0883 at 896.821 kb on + strand, within Dsui_0883
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 892,575 - Dsui_0880 0.86 -0.3 892,590 + +0.7 892,686 - -0.9 892,693 + -1.9 892,719 + Dsui_0881 0.11 +0.7 892,743 + Dsui_0881 0.14 -0.9 892,751 - Dsui_0881 0.16 -0.3 892,758 + Dsui_0881 0.17 -1.6 892,771 - +0.7 892,787 - Dsui_0881 0.21 -1.6 892,821 - Dsui_0881 0.25 +0.7 892,876 - Dsui_0881 0.33 -0.3 892,900 - Dsui_0881 0.37 -0.9 892,921 + Dsui_0881 0.40 -1.6 892,929 + Dsui_0881 0.41 -0.3 893,065 - Dsui_0881 0.60 -0.3 893,147 + Dsui_0881 0.71 -1.3 893,155 - Dsui_0881 0.73 -1.6 893,171 + Dsui_0881 0.75 -0.9 893,227 + Dsui_0881 0.83 +0.7 893,252 + Dsui_0881 0.86 -1.6 893,260 - Dsui_0881 0.87 +0.7 893,284 - +0.7 893,291 - +0.7 893,323 + -0.3 893,331 - -0.3 893,342 + -1.6 893,343 + -0.3 893,350 - +0.7 893,351 - +0.7 893,351 - -1.3 893,395 - -0.9 893,486 + +0.7 893,526 + -0.3 893,580 - -0.3 893,645 - -0.3 893,694 - -1.9 893,724 + -0.9 893,854 - Dsui_0882 0.14 +0.7 893,867 + Dsui_0882 0.14 -0.3 894,074 + +0.7 894,074 + Dsui_0882 0.23 +0.7 894,082 - +0.7 894,082 - +0.7 894,142 + Dsui_0882 0.26 -0.3 894,150 - Dsui_0882 0.27 -0.3 894,160 - Dsui_0882 0.27 -1.6 894,474 - Dsui_0882 0.41 +0.7 894,691 + Dsui_0882 0.50 +0.7 894,707 + Dsui_0882 0.51 -0.3 894,707 + Dsui_0882 0.51 -0.9 894,707 + Dsui_0882 0.51 +0.7 894,715 - Dsui_0882 0.51 +0.7 894,715 - Dsui_0882 0.51 -0.9 894,757 - Dsui_0882 0.53 -0.9 894,771 + Dsui_0882 0.54 -0.9 894,771 + +0.7 894,771 + Dsui_0882 0.54 -2.3 894,789 - Dsui_0882 0.54 +0.7 894,789 - Dsui_0882 0.54 +0.7 894,812 + Dsui_0882 0.55 +0.7 894,834 - Dsui_0882 0.56 -0.3 894,851 + Dsui_0882 0.57 -0.9 894,869 + +0.7 894,956 + Dsui_0882 0.62 -2.3 894,960 - Dsui_0882 0.62 -0.9 895,049 + Dsui_0882 0.66 +0.7 895,051 - Dsui_0882 0.66 +0.7 895,134 - Dsui_0882 0.69 -0.9 895,184 + Dsui_0882 0.72 +0.7 895,205 - Dsui_0882 0.73 +0.7 895,244 + Dsui_0882 0.74 +0.4 895,279 - Dsui_0882 0.76 +0.7 895,282 + Dsui_0882 0.76 -1.9 895,282 + Dsui_0882 0.76 -1.6 895,282 + +0.7 895,852 + +0.7 895,950 - -0.3 895,954 + -0.9 895,955 + +0.7 896,037 - -0.9 896,040 + +0.7 896,050 - -2.3 896,050 - +0.7 896,050 - +0.7 896,075 + -2.1 896,132 + -1.6 896,224 + Dsui_0883 0.12 -0.3 896,227 - Dsui_0883 0.12 -1.6 896,232 - Dsui_0883 0.13 -2.0 896,232 - Dsui_0883 0.13 -1.3 896,251 + Dsui_0883 0.14 +0.7 896,274 + Dsui_0883 0.16 -2.1 896,282 - Dsui_0883 0.16 +0.7 896,282 - Dsui_0883 0.16 +0.7 896,339 + +0.7 896,451 - Dsui_0883 0.28 -0.9 896,463 - Dsui_0883 0.29 +0.7 896,526 - Dsui_0883 0.33 -1.3 896,526 - Dsui_0883 0.33 -0.3 896,559 - +0.7 896,559 - Dsui_0883 0.36 -0.9 896,559 - Dsui_0883 0.36 -0.9 896,574 + +0.7 896,574 + +0.7 896,683 - Dsui_0883 0.44 -2.3 896,742 - Dsui_0883 0.48 -3.0 896,771 - Dsui_0883 0.50 -3.0 896,776 - Dsui_0883 0.51 -0.5 896,821 + Dsui_0883 0.54 +0.7
Or see this region's nucleotide sequence