Experiment: ALP with Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0035 and Dsui_0036 are separated by 115 nucleotides Dsui_0036 and Dsui_0037 are separated by 86 nucleotides
Dsui_0035: Dsui_0035 - ankyrin repeat-containing protein, at 31,805 to 32,854
_0035
Dsui_0036: Dsui_0036 - TonB family protein, at 32,970 to 33,542
_0036
Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840
_0037
Position (kb)
32
33
34 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 32.118 kb on - strand, within Dsui_0035 at 32.129 kb on - strand, within Dsui_0035 at 32.187 kb on - strand, within Dsui_0035 at 32.206 kb on + strand, within Dsui_0035 at 32.207 kb on + strand at 32.210 kb on - strand, within Dsui_0035 at 32.210 kb on - strand, within Dsui_0035 at 32.215 kb on - strand at 32.215 kb on - strand, within Dsui_0035 at 32.215 kb on - strand, within Dsui_0035 at 32.230 kb on - strand, within Dsui_0035 at 32.280 kb on - strand, within Dsui_0035 at 32.282 kb on + strand, within Dsui_0035 at 32.332 kb on - strand, within Dsui_0035 at 32.433 kb on + strand at 32.477 kb on + strand at 32.486 kb on + strand, within Dsui_0035 at 32.618 kb on - strand, within Dsui_0035 at 32.660 kb on + strand at 32.671 kb on + strand at 32.671 kb on + strand at 32.758 kb on - strand at 32.834 kb on - strand at 33.188 kb on + strand, within Dsui_0036 at 33.188 kb on + strand, within Dsui_0036 at 33.261 kb on - strand, within Dsui_0036 at 33.273 kb on - strand, within Dsui_0036 at 33.332 kb on + strand, within Dsui_0036 at 33.353 kb on - strand, within Dsui_0036 at 33.551 kb on + strand at 33.559 kb on - strand at 33.671 kb on + strand at 33.715 kb on + strand at 33.786 kb on - strand, within Dsui_0037 at 33.851 kb on + strand at 33.871 kb on + strand, within Dsui_0037 at 33.895 kb on + strand at 33.918 kb on + strand, within Dsui_0037 at 33.930 kb on - strand, within Dsui_0037 at 33.962 kb on - strand, within Dsui_0037 at 34.171 kb on - strand, within Dsui_0037 at 34.182 kb on + strand, within Dsui_0037 at 34.190 kb on + strand, within Dsui_0037 at 34.225 kb on - strand, within Dsui_0037 at 34.225 kb on - strand, within Dsui_0037 at 34.237 kb on - strand, within Dsui_0037 at 34.238 kb on - strand, within Dsui_0037 at 34.242 kb on + strand, within Dsui_0037 at 34.275 kb on + strand, within Dsui_0037 at 34.297 kb on + strand, within Dsui_0037 at 34.306 kb on - strand at 34.428 kb on + strand, within Dsui_0037 at 34.436 kb on - strand, within Dsui_0037 at 34.461 kb on - strand, within Dsui_0037 at 34.476 kb on - strand, within Dsui_0037 at 34.482 kb on - strand, within Dsui_0037
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.2 mM remove 32,118 - Dsui_0035 0.30 -1.2 32,129 - Dsui_0035 0.31 -0.6 32,187 - Dsui_0035 0.36 +0.2 32,206 + Dsui_0035 0.38 -0.8 32,207 + +0.8 32,210 - Dsui_0035 0.39 -2.0 32,210 - Dsui_0035 0.39 -1.4 32,215 - -1.8 32,215 - Dsui_0035 0.39 -1.3 32,215 - Dsui_0035 0.39 -0.8 32,230 - Dsui_0035 0.40 -0.4 32,280 - Dsui_0035 0.45 -2.4 32,282 + Dsui_0035 0.45 -1.8 32,332 - Dsui_0035 0.50 -4.0 32,433 + +0.8 32,477 + +0.8 32,486 + Dsui_0035 0.65 -0.2 32,618 - Dsui_0035 0.77 -1.1 32,660 + -1.2 32,671 + +0.8 32,671 + -1.2 32,758 - +1.8 32,834 - -2.5 33,188 + Dsui_0036 0.38 -0.9 33,188 + Dsui_0036 0.38 -1.7 33,261 - Dsui_0036 0.51 -0.8 33,273 - Dsui_0036 0.53 +0.8 33,332 + Dsui_0036 0.63 -2.8 33,353 - Dsui_0036 0.67 -1.2 33,551 + +0.8 33,559 - -0.8 33,671 + -0.2 33,715 + +0.8 33,786 - Dsui_0037 0.13 -1.5 33,851 + +0.8 33,871 + Dsui_0037 0.20 -2.4 33,895 + +0.8 33,918 + Dsui_0037 0.24 -0.2 33,930 - Dsui_0037 0.25 -2.0 33,962 - Dsui_0037 0.27 -1.5 34,171 - Dsui_0037 0.45 -0.8 34,182 + Dsui_0037 0.46 -3.0 34,190 + Dsui_0037 0.46 -2.0 34,225 - Dsui_0037 0.49 +0.8 34,225 - Dsui_0037 0.49 +0.8 34,237 - Dsui_0037 0.50 -0.2 34,238 - Dsui_0037 0.50 -2.0 34,242 + Dsui_0037 0.51 -1.2 34,275 + Dsui_0037 0.53 -1.2 34,297 + Dsui_0037 0.55 -0.2 34,306 - +0.8 34,428 + Dsui_0037 0.66 -0.8 34,436 - Dsui_0037 0.67 +0.8 34,461 - Dsui_0037 0.69 -0.2 34,476 - Dsui_0037 0.70 +0.0 34,482 - Dsui_0037 0.70 -0.1
Or see this region's nucleotide sequence