Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20045 and BWI76_RS20050 are separated by 105 nucleotides BWI76_RS20050 and BWI76_RS20055 overlap by 24 nucleotides BWI76_RS20055 and BWI76_RS20060 overlap by 4 nucleotides BWI76_RS20060 and BWI76_RS20065 overlap by 1 nucleotides
BWI76_RS20045: BWI76_RS20045 - hypothetical protein, at 4,198,990 to 4,200,510
_RS20045
BWI76_RS20050: BWI76_RS20050 - hypothetical protein, at 4,200,616 to 4,201,239
_RS20050
BWI76_RS20055: BWI76_RS20055 - 2-succinylbenzoate-CoA ligase, at 4,201,216 to 4,202,607
_RS20055
BWI76_RS20060: BWI76_RS20060 - o-succinylbenzoate synthase, at 4,202,604 to 4,203,569
_RS20060
BWI76_RS20065: BWI76_RS20065 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 4,203,569 to 4,204,426
_RS20065
Position (kb) 4201
4202
4203 Strain fitness (log2 ratio) -1
0
1 at 4200.844 kb on + strand, within BWI76_RS20050 at 4201.569 kb on - strand, within BWI76_RS20055 at 4201.754 kb on - strand, within BWI76_RS20055 at 4202.020 kb on - strand, within BWI76_RS20055 at 4202.519 kb on - strand at 4202.549 kb on + strand at 4202.602 kb on + strand at 4202.610 kb on - strand at 4202.632 kb on - strand at 4202.687 kb on + strand at 4202.728 kb on - strand, within BWI76_RS20060 at 4202.798 kb on + strand, within BWI76_RS20060 at 4202.935 kb on - strand, within BWI76_RS20060 at 4203.063 kb on - strand, within BWI76_RS20060 at 4203.151 kb on + strand, within BWI76_RS20060 at 4203.174 kb on - strand, within BWI76_RS20060 at 4203.306 kb on - strand, within BWI76_RS20060
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 4,200,844 + BWI76_RS20050 0.37 -0.6 4,201,569 - BWI76_RS20055 0.25 +0.4 4,201,754 - BWI76_RS20055 0.39 +0.4 4,202,020 - BWI76_RS20055 0.58 +0.3 4,202,519 - +0.6 4,202,549 + -0.1 4,202,602 + -0.1 4,202,610 - -0.4 4,202,632 - +0.1 4,202,687 + +0.2 4,202,728 - BWI76_RS20060 0.13 +0.1 4,202,798 + BWI76_RS20060 0.20 +0.2 4,202,935 - BWI76_RS20060 0.34 -0.1 4,203,063 - BWI76_RS20060 0.48 +0.4 4,203,151 + BWI76_RS20060 0.57 -0.6 4,203,174 - BWI76_RS20060 0.59 -0.8 4,203,306 - BWI76_RS20060 0.73 -0.4
Or see this region's nucleotide sequence