Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17065 and BWI76_RS17070 are separated by 342 nucleotides BWI76_RS17070 and BWI76_RS17075 are separated by 154 nucleotides
BWI76_RS17065: BWI76_RS17065 - phosphoenolpyruvate synthase, at 3,540,060 to 3,542,438
_RS17065
BWI76_RS17070: BWI76_RS17070 - phosphoenolpyruvate synthase regulatory protein, at 3,542,781 to 3,543,614
_RS17070
BWI76_RS17075: BWI76_RS17075 - 3-deoxy-7-phosphoheptulonate synthase, at 3,543,769 to 3,544,815
_RS17075
Position (kb)
3542
3543
3544 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3542.225 kb on + strand at 3542.322 kb on + strand at 3542.363 kb on + strand at 3542.368 kb on + strand at 3542.381 kb on - strand at 3542.381 kb on - strand at 3542.381 kb on - strand at 3542.381 kb on - strand at 3542.391 kb on + strand at 3542.396 kb on + strand at 3542.396 kb on + strand at 3542.404 kb on - strand at 3542.404 kb on - strand at 3542.411 kb on - strand at 3542.428 kb on + strand at 3542.430 kb on + strand at 3542.430 kb on + strand at 3542.444 kb on - strand at 3542.496 kb on + strand at 3542.510 kb on + strand at 3542.581 kb on + strand at 3542.600 kb on - strand at 3542.761 kb on + strand at 3542.788 kb on + strand at 3542.788 kb on + strand at 3542.788 kb on + strand at 3542.788 kb on + strand at 3542.796 kb on - strand at 3542.796 kb on - strand at 3542.844 kb on + strand at 3542.844 kb on + strand at 3542.844 kb on + strand at 3542.877 kb on + strand, within BWI76_RS17070 at 3542.885 kb on + strand, within BWI76_RS17070 at 3542.890 kb on + strand, within BWI76_RS17070 at 3542.940 kb on + strand, within BWI76_RS17070 at 3543.189 kb on - strand, within BWI76_RS17070 at 3543.220 kb on + strand, within BWI76_RS17070 at 3543.539 kb on - strand at 3543.670 kb on + strand at 3543.910 kb on + strand, within BWI76_RS17075 at 3544.161 kb on + strand, within BWI76_RS17075 at 3544.279 kb on - strand, within BWI76_RS17075 at 3544.310 kb on - strand, within BWI76_RS17075 at 3544.444 kb on - strand, within BWI76_RS17075
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,542,225 + -4.3 3,542,322 + -1.2 3,542,363 + -3.6 3,542,368 + -3.6 3,542,381 - -6.5 3,542,381 - -4.4 3,542,381 - -4.1 3,542,381 - -3.6 3,542,391 + -2.1 3,542,396 + -3.6 3,542,396 + -4.7 3,542,404 - -3.4 3,542,404 - -5.0 3,542,411 - -4.7 3,542,428 + -4.0 3,542,430 + -2.7 3,542,430 + -2.8 3,542,444 - -3.5 3,542,496 + -2.4 3,542,510 + -3.5 3,542,581 + -0.1 3,542,600 - -0.1 3,542,761 + +0.7 3,542,788 + -0.3 3,542,788 + -1.1 3,542,788 + -0.1 3,542,788 + +0.4 3,542,796 - -1.0 3,542,796 - -0.4 3,542,844 + -0.4 3,542,844 + -0.6 3,542,844 + -0.8 3,542,877 + BWI76_RS17070 0.12 -0.6 3,542,885 + BWI76_RS17070 0.12 -0.4 3,542,890 + BWI76_RS17070 0.13 +0.2 3,542,940 + BWI76_RS17070 0.19 -0.8 3,543,189 - BWI76_RS17070 0.49 -0.1 3,543,220 + BWI76_RS17070 0.53 -0.3 3,543,539 - -0.0 3,543,670 + +0.9 3,543,910 + BWI76_RS17075 0.13 -0.2 3,544,161 + BWI76_RS17075 0.37 -0.6 3,544,279 - BWI76_RS17075 0.49 +0.0 3,544,310 - BWI76_RS17075 0.52 +0.1 3,544,444 - BWI76_RS17075 0.64 -1.4
Or see this region's nucleotide sequence