Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17070

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17065 and BWI76_RS17070 are separated by 342 nucleotidesBWI76_RS17070 and BWI76_RS17075 are separated by 154 nucleotides BWI76_RS17065: BWI76_RS17065 - phosphoenolpyruvate synthase, at 3,540,060 to 3,542,438 _RS17065 BWI76_RS17070: BWI76_RS17070 - phosphoenolpyruvate synthase regulatory protein, at 3,542,781 to 3,543,614 _RS17070 BWI76_RS17075: BWI76_RS17075 - 3-deoxy-7-phosphoheptulonate synthase, at 3,543,769 to 3,544,815 _RS17075 Position (kb) 3542 3543 3544Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3542.225 kb on + strandat 3542.322 kb on + strandat 3542.363 kb on + strandat 3542.368 kb on + strandat 3542.381 kb on - strandat 3542.381 kb on - strandat 3542.381 kb on - strandat 3542.381 kb on - strandat 3542.391 kb on + strandat 3542.396 kb on + strandat 3542.396 kb on + strandat 3542.404 kb on - strandat 3542.404 kb on - strandat 3542.411 kb on - strandat 3542.428 kb on + strandat 3542.430 kb on + strandat 3542.430 kb on + strandat 3542.444 kb on - strandat 3542.496 kb on + strandat 3542.510 kb on + strandat 3542.581 kb on + strandat 3542.600 kb on - strandat 3542.761 kb on + strandat 3542.788 kb on + strandat 3542.788 kb on + strandat 3542.788 kb on + strandat 3542.788 kb on + strandat 3542.796 kb on - strandat 3542.796 kb on - strandat 3542.844 kb on + strandat 3542.844 kb on + strandat 3542.844 kb on + strandat 3542.877 kb on + strand, within BWI76_RS17070at 3542.885 kb on + strand, within BWI76_RS17070at 3542.890 kb on + strand, within BWI76_RS17070at 3542.940 kb on + strand, within BWI76_RS17070at 3543.189 kb on - strand, within BWI76_RS17070at 3543.220 kb on + strand, within BWI76_RS17070at 3543.539 kb on - strandat 3543.670 kb on + strandat 3543.910 kb on + strand, within BWI76_RS17075at 3544.161 kb on + strand, within BWI76_RS17075at 3544.279 kb on - strand, within BWI76_RS17075at 3544.310 kb on - strand, within BWI76_RS17075at 3544.444 kb on - strand, within BWI76_RS17075

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
3,542,225 + -4.3
3,542,322 + -1.2
3,542,363 + -3.6
3,542,368 + -3.6
3,542,381 - -6.5
3,542,381 - -4.4
3,542,381 - -4.1
3,542,381 - -3.6
3,542,391 + -2.1
3,542,396 + -3.6
3,542,396 + -4.7
3,542,404 - -3.4
3,542,404 - -5.0
3,542,411 - -4.7
3,542,428 + -4.0
3,542,430 + -2.7
3,542,430 + -2.8
3,542,444 - -3.5
3,542,496 + -2.4
3,542,510 + -3.5
3,542,581 + -0.1
3,542,600 - -0.1
3,542,761 + +0.7
3,542,788 + -0.3
3,542,788 + -1.1
3,542,788 + -0.1
3,542,788 + +0.4
3,542,796 - -1.0
3,542,796 - -0.4
3,542,844 + -0.4
3,542,844 + -0.6
3,542,844 + -0.8
3,542,877 + BWI76_RS17070 0.12 -0.6
3,542,885 + BWI76_RS17070 0.12 -0.4
3,542,890 + BWI76_RS17070 0.13 +0.2
3,542,940 + BWI76_RS17070 0.19 -0.8
3,543,189 - BWI76_RS17070 0.49 -0.1
3,543,220 + BWI76_RS17070 0.53 -0.3
3,543,539 - -0.0
3,543,670 + +0.9
3,543,910 + BWI76_RS17075 0.13 -0.2
3,544,161 + BWI76_RS17075 0.37 -0.6
3,544,279 - BWI76_RS17075 0.49 +0.0
3,544,310 - BWI76_RS17075 0.52 +0.1
3,544,444 - BWI76_RS17075 0.64 -1.4

Or see this region's nucleotide sequence