Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15125 and BWI76_RS15130 overlap by 4 nucleotides BWI76_RS15130 and BWI76_RS15135 are separated by 300 nucleotides BWI76_RS15135 and BWI76_RS15140 are separated by 35 nucleotides
BWI76_RS15125: BWI76_RS15125 - acetyltransferase, at 3,170,617 to 3,171,195
_RS15125
BWI76_RS15130: BWI76_RS15130 - hypothetical protein, at 3,171,192 to 3,171,638
_RS15130
BWI76_RS15135: BWI76_RS15135 - hypothetical protein, at 3,171,939 to 3,172,229
_RS15135
BWI76_RS15140: BWI76_RS15140 - CusA/CzcA family heavy metal efflux RND transporter, at 3,172,265 to 3,175,378
_RS15140
Position (kb)
3171
3172
3173 Strain fitness (log2 ratio)
-1
0
1 at 3170.991 kb on + strand, within BWI76_RS15125 at 3171.183 kb on - strand at 3171.359 kb on + strand, within BWI76_RS15130 at 3171.413 kb on - strand, within BWI76_RS15130 at 3171.745 kb on - strand at 3171.904 kb on - strand at 3172.060 kb on - strand, within BWI76_RS15135 at 3172.090 kb on - strand, within BWI76_RS15135 at 3172.159 kb on + strand, within BWI76_RS15135 at 3172.167 kb on - strand, within BWI76_RS15135 at 3172.346 kb on + strand at 3172.542 kb on - strand at 3172.695 kb on + strand, within BWI76_RS15140 at 3172.703 kb on - strand, within BWI76_RS15140 at 3172.801 kb on + strand, within BWI76_RS15140
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,170,991 + BWI76_RS15125 0.65 +0.7 3,171,183 - -0.9 3,171,359 + BWI76_RS15130 0.37 +0.3 3,171,413 - BWI76_RS15130 0.49 -0.2 3,171,745 - +0.3 3,171,904 - -1.7 3,172,060 - BWI76_RS15135 0.42 -1.2 3,172,090 - BWI76_RS15135 0.52 -0.5 3,172,159 + BWI76_RS15135 0.76 -0.2 3,172,167 - BWI76_RS15135 0.78 -1.6 3,172,346 + -0.5 3,172,542 - +0.2 3,172,695 + BWI76_RS15140 0.14 -0.0 3,172,703 - BWI76_RS15140 0.14 +0.1 3,172,801 + BWI76_RS15140 0.17 -0.1
Or see this region's nucleotide sequence