Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13080 and BWI76_RS13085 are separated by 190 nucleotides BWI76_RS13085 and BWI76_RS13090 are separated by 286 nucleotides
BWI76_RS13080: BWI76_RS13080 - tyramine oxidase, at 2,727,009 to 2,729,267
_RS13080
BWI76_RS13085: BWI76_RS13085 - bifunctional oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase, at 2,729,458 to 2,731,503
_RS13085
BWI76_RS13090: BWI76_RS13090 - phenylacetate-CoA oxygenase subunit PaaA, at 2,731,790 to 2,732,719
_RS13090
Position (kb)
2729
2730
2731
2732 Strain fitness (log2 ratio)
-1
0
1
2 at 2728.484 kb on + strand, within BWI76_RS13080 at 2728.625 kb on + strand, within BWI76_RS13080 at 2728.857 kb on - strand, within BWI76_RS13080 at 2729.207 kb on - strand at 2729.232 kb on + strand at 2729.240 kb on - strand at 2729.331 kb on + strand at 2729.426 kb on - strand at 2729.426 kb on - strand at 2729.426 kb on - strand at 2729.818 kb on - strand, within BWI76_RS13085 at 2729.949 kb on + strand, within BWI76_RS13085 at 2729.957 kb on - strand, within BWI76_RS13085 at 2730.001 kb on + strand, within BWI76_RS13085 at 2730.009 kb on - strand, within BWI76_RS13085 at 2730.463 kb on - strand, within BWI76_RS13085 at 2730.561 kb on + strand, within BWI76_RS13085 at 2730.775 kb on - strand, within BWI76_RS13085 at 2731.077 kb on - strand, within BWI76_RS13085 at 2731.806 kb on + strand at 2731.992 kb on - strand, within BWI76_RS13090 at 2732.023 kb on - strand, within BWI76_RS13090 at 2732.123 kb on + strand, within BWI76_RS13090 at 2732.224 kb on - strand, within BWI76_RS13090
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,728,484 + BWI76_RS13080 0.65 -0.8 2,728,625 + BWI76_RS13080 0.72 -0.2 2,728,857 - BWI76_RS13080 0.82 -0.3 2,729,207 - -0.1 2,729,232 + -0.5 2,729,240 - -0.4 2,729,331 + +0.1 2,729,426 - +0.4 2,729,426 - +1.1 2,729,426 - -0.0 2,729,818 - BWI76_RS13085 0.18 +1.8 2,729,949 + BWI76_RS13085 0.24 +0.3 2,729,957 - BWI76_RS13085 0.24 +0.9 2,730,001 + BWI76_RS13085 0.27 -0.3 2,730,009 - BWI76_RS13085 0.27 +0.6 2,730,463 - BWI76_RS13085 0.49 +0.5 2,730,561 + BWI76_RS13085 0.54 +0.1 2,730,775 - BWI76_RS13085 0.64 +0.3 2,731,077 - BWI76_RS13085 0.79 -0.7 2,731,806 + +0.6 2,731,992 - BWI76_RS13090 0.22 +0.1 2,732,023 - BWI76_RS13090 0.25 -0.2 2,732,123 + BWI76_RS13090 0.36 -0.6 2,732,224 - BWI76_RS13090 0.47 +0.0
Or see this region's nucleotide sequence