Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11775 and BWI76_RS11780 are separated by 148 nucleotides BWI76_RS11780 and BWI76_RS11785 are separated by 130 nucleotides BWI76_RS11785 and BWI76_RS11790 are separated by 32 nucleotides
BWI76_RS11775: BWI76_RS11775 - 2-deoxy-D-gluconate 3-dehydrogenase, at 2,477,535 to 2,478,296
_RS11775
BWI76_RS11780: BWI76_RS11780 - 2-deoxyglucose-6-phosphatase, at 2,478,445 to 2,479,113
_RS11780
BWI76_RS11785: BWI76_RS11785 - hypothetical protein, at 2,479,244 to 2,479,780
_RS11785
BWI76_RS11790: BWI76_RS11790 - acyl-CoA thioesterase, at 2,479,813 to 2,480,211
_RS11790
Position (kb)
2478
2479
2480 Strain fitness (log2 ratio)
-1
0
1 at 2477.451 kb on + strand at 2477.575 kb on - strand at 2477.628 kb on - strand, within BWI76_RS11775 at 2477.829 kb on - strand, within BWI76_RS11775 at 2478.275 kb on + strand at 2478.283 kb on - strand at 2478.340 kb on + strand at 2478.613 kb on + strand, within BWI76_RS11780 at 2478.926 kb on + strand, within BWI76_RS11780 at 2479.249 kb on - strand at 2479.249 kb on - strand at 2479.401 kb on + strand, within BWI76_RS11785
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,477,451 + +0.5 2,477,575 - -0.4 2,477,628 - BWI76_RS11775 0.12 +0.2 2,477,829 - BWI76_RS11775 0.39 +0.2 2,478,275 + +0.7 2,478,283 - +0.0 2,478,340 + +0.9 2,478,613 + BWI76_RS11780 0.25 -1.2 2,478,926 + BWI76_RS11780 0.72 -1.0 2,479,249 - -0.5 2,479,249 - -0.9 2,479,401 + BWI76_RS11785 0.29 +0.4
Or see this region's nucleotide sequence