Experiment: L-Malic (C) with ammonium chloride; anaerobic; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28695 and AZOBR_RS28700 are separated by 9 nucleotides AZOBR_RS28700 and AZOBR_RS28705 are separated by 295 nucleotides AZOBR_RS28705 and AZOBR_RS28710 overlap by 4 nucleotides AZOBR_RS28710 and AZOBR_RS28715 are separated by 3 nucleotides
AZOBR_RS28695: AZOBR_RS28695 - hypothetical protein, at 604,611 to 605,465
_RS28695
AZOBR_RS28700: AZOBR_RS28700 - hypothetical protein, at 605,475 to 606,137
_RS28700
AZOBR_RS28705: AZOBR_RS28705 - putative bacteriophage protein, at 606,433 to 607,686
_RS28705
AZOBR_RS28710: AZOBR_RS28710 - hypothetical protein, at 607,683 to 608,054
_RS28710
AZOBR_RS28715: AZOBR_RS28715 - hypothetical protein, at 608,058 to 608,789
_RS28715
Position (kb) 606
607
608 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 605.552 kb on - strand at 605.581 kb on + strand, within AZOBR_RS28700 at 605.620 kb on + strand, within AZOBR_RS28700 at 605.621 kb on - strand, within AZOBR_RS28700 at 605.719 kb on + strand, within AZOBR_RS28700 at 605.918 kb on - strand, within AZOBR_RS28700 at 606.088 kb on - strand at 606.127 kb on + strand at 606.127 kb on + strand at 606.127 kb on + strand at 606.128 kb on - strand at 606.128 kb on - strand at 606.173 kb on - strand at 606.173 kb on - strand at 606.173 kb on - strand at 606.328 kb on + strand at 606.328 kb on + strand at 606.329 kb on - strand at 606.329 kb on - strand at 606.329 kb on - strand at 606.329 kb on - strand at 606.329 kb on - strand at 606.350 kb on - strand at 606.350 kb on - strand at 606.554 kb on + strand at 606.669 kb on - strand, within AZOBR_RS28705 at 606.669 kb on - strand, within AZOBR_RS28705 at 606.669 kb on - strand, within AZOBR_RS28705 at 606.728 kb on + strand, within AZOBR_RS28705 at 606.749 kb on + strand, within AZOBR_RS28705 at 606.782 kb on + strand, within AZOBR_RS28705 at 606.782 kb on + strand, within AZOBR_RS28705 at 606.866 kb on + strand, within AZOBR_RS28705 at 607.044 kb on - strand, within AZOBR_RS28705 at 607.044 kb on - strand, within AZOBR_RS28705 at 607.427 kb on + strand, within AZOBR_RS28705 at 607.428 kb on - strand, within AZOBR_RS28705 at 607.428 kb on - strand, within AZOBR_RS28705 at 607.428 kb on - strand, within AZOBR_RS28705 at 607.428 kb on - strand, within AZOBR_RS28705 at 607.472 kb on + strand, within AZOBR_RS28705 at 607.472 kb on + strand, within AZOBR_RS28705 at 607.472 kb on + strand, within AZOBR_RS28705 at 607.473 kb on - strand, within AZOBR_RS28705 at 607.559 kb on + strand, within AZOBR_RS28705 at 607.559 kb on + strand, within AZOBR_RS28705 at 607.607 kb on + strand at 607.607 kb on + strand at 607.607 kb on + strand at 607.607 kb on + strand at 607.607 kb on + strand at 607.608 kb on - strand at 607.608 kb on - strand at 607.608 kb on - strand at 607.608 kb on - strand at 607.619 kb on + strand at 607.619 kb on + strand at 607.619 kb on + strand at 607.619 kb on + strand at 607.620 kb on - strand at 607.620 kb on - strand at 607.676 kb on + strand at 607.676 kb on + strand at 607.677 kb on - strand at 607.677 kb on - strand at 607.855 kb on + strand, within AZOBR_RS28710 at 608.177 kb on - strand, within AZOBR_RS28715 at 608.324 kb on - strand, within AZOBR_RS28715 at 608.324 kb on - strand, within AZOBR_RS28715 at 608.324 kb on - strand, within AZOBR_RS28715 at 608.324 kb on - strand, within AZOBR_RS28715 at 608.324 kb on - strand, within AZOBR_RS28715
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 3 days remove 605,552 - -0.4 605,581 + AZOBR_RS28700 0.16 +1.7 605,620 + AZOBR_RS28700 0.22 -0.0 605,621 - AZOBR_RS28700 0.22 -0.1 605,719 + AZOBR_RS28700 0.37 +1.1 605,918 - AZOBR_RS28700 0.67 +3.0 606,088 - -0.0 606,127 + -0.0 606,127 + -1.6 606,127 + +1.0 606,128 - +1.5 606,128 - +1.7 606,173 - +2.5 606,173 - +1.7 606,173 - +0.8 606,328 + -2.6 606,328 + -0.1 606,329 - +1.5 606,329 - +0.9 606,329 - +0.5 606,329 - +0.9 606,329 - +1.3 606,350 - -0.4 606,350 - +1.4 606,554 + -0.5 606,669 - AZOBR_RS28705 0.19 +3.7 606,669 - AZOBR_RS28705 0.19 +2.6 606,669 - AZOBR_RS28705 0.19 +3.1 606,728 + AZOBR_RS28705 0.24 +0.2 606,749 + AZOBR_RS28705 0.25 +0.3 606,782 + AZOBR_RS28705 0.28 +0.6 606,782 + AZOBR_RS28705 0.28 +0.2 606,866 + AZOBR_RS28705 0.35 +0.6 607,044 - AZOBR_RS28705 0.49 -0.1 607,044 - AZOBR_RS28705 0.49 +0.0 607,427 + AZOBR_RS28705 0.79 +0.2 607,428 - AZOBR_RS28705 0.79 +0.2 607,428 - AZOBR_RS28705 0.79 +1.2 607,428 - AZOBR_RS28705 0.79 +0.2 607,428 - AZOBR_RS28705 0.79 -0.1 607,472 + AZOBR_RS28705 0.83 -0.6 607,472 + AZOBR_RS28705 0.83 +0.6 607,472 + AZOBR_RS28705 0.83 -0.0 607,473 - AZOBR_RS28705 0.83 -1.2 607,559 + AZOBR_RS28705 0.90 -1.8 607,559 + AZOBR_RS28705 0.90 -1.0 607,607 + +0.5 607,607 + -0.0 607,607 + -0.2 607,607 + +0.3 607,607 + +0.1 607,608 - +0.2 607,608 - +0.7 607,608 - -0.3 607,608 - -0.0 607,619 + +0.1 607,619 + -0.4 607,619 + -0.1 607,619 + +0.0 607,620 - +0.5 607,620 - +0.1 607,676 + +0.2 607,676 + -0.4 607,677 - +0.8 607,677 - -0.0 607,855 + AZOBR_RS28710 0.46 +0.1 608,177 - AZOBR_RS28715 0.16 +0.9 608,324 - AZOBR_RS28715 0.36 +1.8 608,324 - AZOBR_RS28715 0.36 +1.4 608,324 - AZOBR_RS28715 0.36 +1.5 608,324 - AZOBR_RS28715 0.36 -1.0 608,324 - AZOBR_RS28715 0.36 +0.8
Or see this region's nucleotide sequence