Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14855

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14845 and AZOBR_RS14850 overlap by 4 nucleotidesAZOBR_RS14850 and AZOBR_RS14855 are separated by 23 nucleotidesAZOBR_RS14855 and AZOBR_RS14860 are separated by 16 nucleotides AZOBR_RS14845: AZOBR_RS14845 - cysteine desulfurase, at 103,768 to 105,030 _RS14845 AZOBR_RS14850: AZOBR_RS14850 - nitrogen fixation protein NifU, at 105,027 to 105,494 _RS14850 AZOBR_RS14855: AZOBR_RS14855 - hypothetical protein, at 105,518 to 105,925 _RS14855 AZOBR_RS14860: AZOBR_RS14860 - hypothetical protein, at 105,942 to 106,298 _RS14860 Position (kb) 105 106Strain fitness (log2 ratio) -1 0 1at 105.601 kb on + strand, within AZOBR_RS14855at 105.665 kb on + strand, within AZOBR_RS14855at 105.665 kb on + strand, within AZOBR_RS14855at 105.710 kb on + strand, within AZOBR_RS14855at 105.710 kb on + strand, within AZOBR_RS14855at 105.711 kb on - strand, within AZOBR_RS14855at 105.916 kb on + strandat 106.042 kb on - strand, within AZOBR_RS14860at 106.422 kb on - strandat 106.514 kb on + strandat 106.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 3 days
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105,601 + AZOBR_RS14855 0.20 -0.8
105,665 + AZOBR_RS14855 0.36 -1.6
105,665 + AZOBR_RS14855 0.36 -0.5
105,710 + AZOBR_RS14855 0.47 +0.3
105,710 + AZOBR_RS14855 0.47 -0.8
105,711 - AZOBR_RS14855 0.47 -0.1
105,916 + +0.1
106,042 - AZOBR_RS14860 0.28 +0.5
106,422 - +0.5
106,514 + +0.1
106,830 - -0.9

Or see this region's nucleotide sequence