Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08245

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS08240 and AZOBR_RS08245 overlap by 1 nucleotidesAZOBR_RS08245 and AZOBR_RS08250 are separated by 3 nucleotidesAZOBR_RS08250 and AZOBR_RS08255 overlap by 1 nucleotides AZOBR_RS08240: AZOBR_RS08240 - L-proline and D-alanine ABC transporter, permease component 2 (from data), at 1,735,888 to 1,737,405 _RS08240 AZOBR_RS08245: AZOBR_RS08245 - L-proline and D-alanine ABC transporter, ATPase component 1 (from data), at 1,737,405 to 1,738,289 _RS08245 AZOBR_RS08250: AZOBR_RS08250 - L-proline and D-alanine ABC transporter, ATPase component 2 (from data), at 1,738,293 to 1,739,003 _RS08250 AZOBR_RS08255: AZOBR_RS08255 - membrane protein, at 1,739,003 to 1,739,362 _RS08255 Position (kb) 1737 1738 1739Strain fitness (log2 ratio) -1 0 1 2at 1736.431 kb on + strand, within AZOBR_RS08240at 1736.431 kb on + strand, within AZOBR_RS08240at 1736.431 kb on + strand, within AZOBR_RS08240at 1736.431 kb on + strand, within AZOBR_RS08240at 1736.432 kb on - strand, within AZOBR_RS08240at 1736.432 kb on - strand, within AZOBR_RS08240at 1736.432 kb on - strand, within AZOBR_RS08240at 1736.432 kb on - strand, within AZOBR_RS08240at 1736.432 kb on - strand, within AZOBR_RS08240at 1736.494 kb on + strand, within AZOBR_RS08240at 1736.495 kb on - strand, within AZOBR_RS08240at 1736.522 kb on - strand, within AZOBR_RS08240at 1736.648 kb on - strand, within AZOBR_RS08240at 1736.707 kb on + strand, within AZOBR_RS08240at 1736.863 kb on + strand, within AZOBR_RS08240at 1736.864 kb on - strand, within AZOBR_RS08240at 1736.866 kb on + strand, within AZOBR_RS08240at 1736.866 kb on + strand, within AZOBR_RS08240at 1736.867 kb on - strand, within AZOBR_RS08240at 1736.867 kb on - strand, within AZOBR_RS08240at 1737.223 kb on + strand, within AZOBR_RS08240at 1737.585 kb on + strand, within AZOBR_RS08245at 1737.586 kb on - strand, within AZOBR_RS08245at 1737.816 kb on + strand, within AZOBR_RS08245at 1737.856 kb on - strand, within AZOBR_RS08245at 1738.041 kb on + strand, within AZOBR_RS08245at 1738.041 kb on + strand, within AZOBR_RS08245at 1738.042 kb on - strand, within AZOBR_RS08245at 1738.042 kb on - strand, within AZOBR_RS08245at 1738.042 kb on - strand, within AZOBR_RS08245at 1738.201 kb on - strandat 1738.201 kb on - strandat 1738.201 kb on - strandat 1738.323 kb on + strandat 1738.323 kb on + strandat 1738.503 kb on + strand, within AZOBR_RS08250at 1738.504 kb on - strand, within AZOBR_RS08250at 1738.504 kb on - strand, within AZOBR_RS08250at 1738.504 kb on - strand, within AZOBR_RS08250at 1738.905 kb on + strand, within AZOBR_RS08250at 1738.905 kb on + strand, within AZOBR_RS08250at 1738.905 kb on + strand, within AZOBR_RS08250at 1738.906 kb on - strand, within AZOBR_RS08250at 1739.133 kb on - strand, within AZOBR_RS08255at 1739.256 kb on - strand, within AZOBR_RS08255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 3 days
remove
1,736,431 + AZOBR_RS08240 0.36 +0.7
1,736,431 + AZOBR_RS08240 0.36 -1.1
1,736,431 + AZOBR_RS08240 0.36 -1.0
1,736,431 + AZOBR_RS08240 0.36 -1.1
1,736,432 - AZOBR_RS08240 0.36 +0.7
1,736,432 - AZOBR_RS08240 0.36 +0.7
1,736,432 - AZOBR_RS08240 0.36 +1.0
1,736,432 - AZOBR_RS08240 0.36 +0.3
1,736,432 - AZOBR_RS08240 0.36 +0.8
1,736,494 + AZOBR_RS08240 0.40 +0.9
1,736,495 - AZOBR_RS08240 0.40 +2.3
1,736,522 - AZOBR_RS08240 0.42 -0.8
1,736,648 - AZOBR_RS08240 0.50 +0.6
1,736,707 + AZOBR_RS08240 0.54 +1.4
1,736,863 + AZOBR_RS08240 0.64 -0.9
1,736,864 - AZOBR_RS08240 0.64 +0.5
1,736,866 + AZOBR_RS08240 0.64 +0.7
1,736,866 + AZOBR_RS08240 0.64 +0.7
1,736,867 - AZOBR_RS08240 0.64 +0.1
1,736,867 - AZOBR_RS08240 0.64 +1.3
1,737,223 + AZOBR_RS08240 0.88 +0.5
1,737,585 + AZOBR_RS08245 0.20 +0.3
1,737,586 - AZOBR_RS08245 0.20 +1.0
1,737,816 + AZOBR_RS08245 0.46 +0.7
1,737,856 - AZOBR_RS08245 0.51 +0.8
1,738,041 + AZOBR_RS08245 0.72 +2.2
1,738,041 + AZOBR_RS08245 0.72 +0.8
1,738,042 - AZOBR_RS08245 0.72 +1.0
1,738,042 - AZOBR_RS08245 0.72 +0.3
1,738,042 - AZOBR_RS08245 0.72 +0.0
1,738,201 - +0.7
1,738,201 - +0.9
1,738,201 - -0.6
1,738,323 + -0.5
1,738,323 + +0.3
1,738,503 + AZOBR_RS08250 0.30 +2.3
1,738,504 - AZOBR_RS08250 0.30 +0.6
1,738,504 - AZOBR_RS08250 0.30 +0.0
1,738,504 - AZOBR_RS08250 0.30 +0.4
1,738,905 + AZOBR_RS08250 0.86 +0.2
1,738,905 + AZOBR_RS08250 0.86 +0.4
1,738,905 + AZOBR_RS08250 0.86 +0.4
1,738,906 - AZOBR_RS08250 0.86 +0.6
1,739,133 - AZOBR_RS08255 0.36 +0.7
1,739,256 - AZOBR_RS08255 0.70 +0.3

Or see this region's nucleotide sequence