Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03495

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS03490 and AZOBR_RS03495 are separated by 26 nucleotidesAZOBR_RS03495 and AZOBR_RS03500 are separated by 147 nucleotidesAZOBR_RS03500 and AZOBR_RS03505 are separated by 43 nucleotides AZOBR_RS03490: AZOBR_RS03490 - hypothetical protein, at 738,564 to 739,907 _RS03490 AZOBR_RS03495: AZOBR_RS03495 - hypothetical protein, at 739,934 to 740,575 _RS03495 AZOBR_RS03500: AZOBR_RS03500 - hypothetical protein, at 740,723 to 741,418 _RS03500 AZOBR_RS03505: AZOBR_RS03505 - hypothetical protein, at 741,462 to 742,811 _RS03505 Position (kb) 739 740 741Strain fitness (log2 ratio) -2 -1 0 1at 739.820 kb on + strandat 739.820 kb on + strandat 739.820 kb on + strandat 740.229 kb on - strand, within AZOBR_RS03495at 740.478 kb on + strand, within AZOBR_RS03495at 740.479 kb on - strand, within AZOBR_RS03495at 740.479 kb on - strand, within AZOBR_RS03495at 740.479 kb on - strand, within AZOBR_RS03495at 740.519 kb on + strandat 740.519 kb on + strandat 740.520 kb on - strandat 740.520 kb on - strandat 740.685 kb on + strandat 741.291 kb on - strand, within AZOBR_RS03500at 741.424 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 3 days
remove
739,820 + +0.4
739,820 + -0.6
739,820 + +0.2
740,229 - AZOBR_RS03495 0.46 -0.0
740,478 + AZOBR_RS03495 0.85 -0.5
740,479 - AZOBR_RS03495 0.85 +0.4
740,479 - AZOBR_RS03495 0.85 -0.3
740,479 - AZOBR_RS03495 0.85 +1.2
740,519 + -0.1
740,519 + -0.8
740,520 - -0.8
740,520 - +0.2
740,685 + -2.1
741,291 - AZOBR_RS03500 0.82 -0.4
741,424 - +0.2

Or see this region's nucleotide sequence