Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24765

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24755 and AO353_24760 are separated by 12 nucleotidesAO353_24760 and AO353_24765 are separated by 108 nucleotidesAO353_24765 and AO353_24770 are separated by 36 nucleotides AO353_24755: AO353_24755 - ATP-dependent DNA helicase, at 5,455,964 to 5,458,228 _24755 AO353_24760: AO353_24760 - glutamine amidotransferase, at 5,458,241 to 5,459,038 _24760 AO353_24765: AO353_24765 - GCN5 family acetyltransferase, at 5,459,147 to 5,459,644 _24765 AO353_24770: AO353_24770 - FAD-dependent oxidoreductase, at 5,459,681 to 5,460,991 _24770 Position (kb) 5459 5460Strain fitness (log2 ratio) -2 -1 0 1at 5458.382 kb on - strand, within AO353_24760at 5458.494 kb on + strand, within AO353_24760at 5458.494 kb on + strand, within AO353_24760at 5458.495 kb on - strand, within AO353_24760at 5458.504 kb on - strandat 5458.767 kb on + strand, within AO353_24760at 5458.781 kb on + strand, within AO353_24760at 5458.791 kb on + strand, within AO353_24760at 5458.917 kb on + strand, within AO353_24760at 5459.008 kb on - strandat 5459.008 kb on - strandat 5459.075 kb on + strandat 5459.075 kb on + strandat 5459.076 kb on - strandat 5459.076 kb on - strandat 5459.076 kb on - strandat 5459.076 kb on - strandat 5459.382 kb on + strand, within AO353_24765at 5459.394 kb on + strand, within AO353_24765at 5459.395 kb on - strand, within AO353_24765at 5459.395 kb on - strand, within AO353_24765at 5459.395 kb on - strand, within AO353_24765at 5459.496 kb on + strand, within AO353_24765at 5459.568 kb on + strand, within AO353_24765at 5459.569 kb on - strand, within AO353_24765at 5459.574 kb on + strand, within AO353_24765at 5459.574 kb on + strand, within AO353_24765at 5459.575 kb on - strandat 5459.575 kb on - strand, within AO353_24765at 5459.575 kb on - strand, within AO353_24765at 5459.575 kb on - strand, within AO353_24765at 5459.687 kb on + strandat 5459.688 kb on - strandat 5459.737 kb on + strandat 5459.737 kb on + strandat 5459.737 kb on + strandat 5459.737 kb on + strandat 5459.738 kb on - strandat 5459.738 kb on - strandat 5459.738 kb on - strandat 5459.874 kb on + strand, within AO353_24770at 5459.875 kb on - strand, within AO353_24770at 5459.886 kb on + strandat 5459.886 kb on + strand, within AO353_24770at 5459.886 kb on + strand, within AO353_24770at 5459.886 kb on + strand, within AO353_24770at 5459.887 kb on - strand, within AO353_24770at 5459.887 kb on - strand, within AO353_24770at 5459.887 kb on - strand, within AO353_24770at 5459.967 kb on + strand, within AO353_24770at 5459.968 kb on - strand, within AO353_24770at 5460.024 kb on + strand, within AO353_24770at 5460.024 kb on + strand, within AO353_24770at 5460.024 kb on + strand, within AO353_24770at 5460.025 kb on - strand, within AO353_24770at 5460.025 kb on - strand, within AO353_24770at 5460.108 kb on + strand, within AO353_24770at 5460.108 kb on + strand, within AO353_24770at 5460.108 kb on + strand, within AO353_24770at 5460.108 kb on + strand, within AO353_24770at 5460.109 kb on - strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.201 kb on + strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.202 kb on - strand, within AO353_24770at 5460.459 kb on + strand, within AO353_24770at 5460.460 kb on - strand, within AO353_24770at 5460.460 kb on - strand, within AO353_24770at 5460.580 kb on + strand, within AO353_24770at 5460.580 kb on + strand, within AO353_24770at 5460.580 kb on + strand, within AO353_24770at 5460.581 kb on - strand, within AO353_24770

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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5,458,382 - AO353_24760 0.18 +1.7
5,458,494 + AO353_24760 0.32 +0.1
5,458,494 + AO353_24760 0.32 +0.5
5,458,495 - AO353_24760 0.32 -0.8
5,458,504 - +1.5
5,458,767 + AO353_24760 0.66 +0.5
5,458,781 + AO353_24760 0.68 -0.5
5,458,791 + AO353_24760 0.69 -1.1
5,458,917 + AO353_24760 0.85 +0.9
5,459,008 - -0.5
5,459,008 - +0.9
5,459,075 + +0.1
5,459,075 + -0.3
5,459,076 - +0.8
5,459,076 - -0.5
5,459,076 - -0.5
5,459,076 - -1.8
5,459,382 + AO353_24765 0.47 -0.1
5,459,394 + AO353_24765 0.50 +1.5
5,459,395 - AO353_24765 0.50 -0.9
5,459,395 - AO353_24765 0.50 +0.3
5,459,395 - AO353_24765 0.50 -0.0
5,459,496 + AO353_24765 0.70 -0.0
5,459,568 + AO353_24765 0.85 +0.0
5,459,569 - AO353_24765 0.85 +0.9
5,459,574 + AO353_24765 0.86 +0.1
5,459,574 + AO353_24765 0.86 +0.5
5,459,575 - +1.5
5,459,575 - AO353_24765 0.86 -2.0
5,459,575 - AO353_24765 0.86 -1.9
5,459,575 - AO353_24765 0.86 -0.5
5,459,687 + -0.6
5,459,688 - +1.5
5,459,737 + -1.0
5,459,737 + -0.5
5,459,737 + -0.6
5,459,737 + -1.3
5,459,738 - -1.7
5,459,738 - -0.6
5,459,738 - -0.8
5,459,874 + AO353_24770 0.15 +0.0
5,459,875 - AO353_24770 0.15 -0.7
5,459,886 + -0.1
5,459,886 + AO353_24770 0.16 +0.9
5,459,886 + AO353_24770 0.16 -1.0
5,459,886 + AO353_24770 0.16 -0.1
5,459,887 - AO353_24770 0.16 -1.7
5,459,887 - AO353_24770 0.16 +0.1
5,459,887 - AO353_24770 0.16 +0.6
5,459,967 + AO353_24770 0.22 -1.1
5,459,968 - AO353_24770 0.22 +1.5
5,460,024 + AO353_24770 0.26 -1.1
5,460,024 + AO353_24770 0.26 +1.0
5,460,024 + AO353_24770 0.26 -0.5
5,460,025 - AO353_24770 0.26 -0.5
5,460,025 - AO353_24770 0.26 -1.0
5,460,108 + AO353_24770 0.33 -0.1
5,460,108 + AO353_24770 0.33 -0.2
5,460,108 + AO353_24770 0.33 +1.0
5,460,108 + AO353_24770 0.33 -0.7
5,460,109 - AO353_24770 0.33 -2.3
5,460,201 + AO353_24770 0.40 -1.1
5,460,201 + AO353_24770 0.40 -0.6
5,460,201 + AO353_24770 0.40 -0.0
5,460,201 + AO353_24770 0.40 +0.7
5,460,201 + AO353_24770 0.40 +0.3
5,460,201 + AO353_24770 0.40 +1.1
5,460,201 + AO353_24770 0.40 -0.2
5,460,202 - AO353_24770 0.40 -0.9
5,460,202 - AO353_24770 0.40 -1.6
5,460,202 - AO353_24770 0.40 +1.0
5,460,202 - AO353_24770 0.40 +0.3
5,460,202 - AO353_24770 0.40 -0.5
5,460,202 - AO353_24770 0.40 -1.9
5,460,459 + AO353_24770 0.59 -0.5
5,460,460 - AO353_24770 0.59 -0.3
5,460,460 - AO353_24770 0.59 +0.9
5,460,580 + AO353_24770 0.69 -0.3
5,460,580 + AO353_24770 0.69 -0.7
5,460,580 + AO353_24770 0.69 -1.0
5,460,581 - AO353_24770 0.69 +0.1

Or see this region's nucleotide sequence