Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24520

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_24515 and AO353_24520 are separated by 97 nucleotidesAO353_24520 and AO353_24525 are separated by 198 nucleotides AO353_24515: AO353_24515 - MFS transporter permease, at 5,389,770 to 5,391,068 _24515 AO353_24520: AO353_24520 - short-chain dehydrogenase, at 5,391,166 to 5,391,915 _24520 AO353_24525: AO353_24525 - LysR family transcriptional regulator, at 5,392,114 to 5,393,028 _24525 Position (kb) 5391 5392Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5390.192 kb on - strand, within AO353_24515at 5390.192 kb on - strand, within AO353_24515at 5390.192 kb on - strand, within AO353_24515at 5390.192 kb on - strand, within AO353_24515at 5390.302 kb on + strand, within AO353_24515at 5390.303 kb on - strand, within AO353_24515at 5390.458 kb on + strand, within AO353_24515at 5390.458 kb on + strand, within AO353_24515at 5390.458 kb on + strand, within AO353_24515at 5390.459 kb on - strand, within AO353_24515at 5390.609 kb on + strand, within AO353_24515at 5390.656 kb on + strand, within AO353_24515at 5390.656 kb on + strand, within AO353_24515at 5390.657 kb on - strand, within AO353_24515at 5390.666 kb on - strand, within AO353_24515at 5390.725 kb on + strand, within AO353_24515at 5390.725 kb on + strand, within AO353_24515at 5390.725 kb on + strand, within AO353_24515at 5390.725 kb on + strand, within AO353_24515at 5390.726 kb on - strand, within AO353_24515at 5390.726 kb on - strand, within AO353_24515at 5390.726 kb on - strand, within AO353_24515at 5390.857 kb on + strand, within AO353_24515at 5390.857 kb on + strand, within AO353_24515at 5390.857 kb on + strand, within AO353_24515at 5390.858 kb on - strand, within AO353_24515at 5390.858 kb on - strand, within AO353_24515at 5390.963 kb on - strandat 5390.970 kb on + strandat 5390.970 kb on + strandat 5390.970 kb on + strandat 5390.970 kb on + strandat 5390.970 kb on + strandat 5390.970 kb on + strandat 5390.970 kb on + strandat 5390.971 kb on - strandat 5390.971 kb on - strandat 5390.971 kb on - strandat 5390.974 kb on + strandat 5390.974 kb on + strandat 5390.975 kb on - strandat 5390.975 kb on - strandat 5390.975 kb on - strandat 5391.163 kb on + strandat 5391.163 kb on + strandat 5391.163 kb on + strandat 5391.163 kb on + strandat 5391.163 kb on + strandat 5391.164 kb on - strandat 5391.164 kb on - strandat 5391.215 kb on + strandat 5391.215 kb on + strandat 5391.215 kb on + strandat 5391.215 kb on + strandat 5391.216 kb on - strandat 5391.216 kb on - strandat 5391.216 kb on - strandat 5391.216 kb on - strandat 5391.284 kb on - strand, within AO353_24520at 5391.340 kb on - strand, within AO353_24520at 5391.382 kb on + strand, within AO353_24520at 5391.382 kb on + strand, within AO353_24520at 5391.382 kb on + strand, within AO353_24520at 5391.383 kb on - strandat 5391.383 kb on - strand, within AO353_24520at 5391.452 kb on + strand, within AO353_24520at 5391.452 kb on + strand, within AO353_24520at 5391.452 kb on + strand, within AO353_24520at 5391.453 kb on - strand, within AO353_24520at 5391.592 kb on + strand, within AO353_24520at 5391.592 kb on + strand, within AO353_24520at 5391.840 kb on + strand, within AO353_24520at 5391.840 kb on + strand, within AO353_24520at 5391.840 kb on + strand, within AO353_24520at 5391.840 kb on + strand, within AO353_24520at 5391.939 kb on + strandat 5392.068 kb on - strandat 5392.084 kb on + strandat 5392.103 kb on + strandat 5392.104 kb on - strandat 5392.109 kb on + strandat 5392.109 kb on + strandat 5392.109 kb on + strandat 5392.109 kb on + strandat 5392.110 kb on - strandat 5392.110 kb on - strandat 5392.110 kb on - strandat 5392.110 kb on - strandat 5392.262 kb on + strand, within AO353_24525at 5392.262 kb on + strand, within AO353_24525at 5392.262 kb on + strand, within AO353_24525at 5392.263 kb on - strand, within AO353_24525at 5392.263 kb on - strand, within AO353_24525at 5392.263 kb on - strand, within AO353_24525at 5392.263 kb on - strand, within AO353_24525at 5392.263 kb on - strand, within AO353_24525at 5392.263 kb on - strand, within AO353_24525at 5392.336 kb on + strand, within AO353_24525at 5392.336 kb on + strand, within AO353_24525at 5392.336 kb on + strand, within AO353_24525at 5392.336 kb on + strand, within AO353_24525at 5392.336 kb on + strand, within AO353_24525at 5392.337 kb on - strand, within AO353_24525at 5392.337 kb on - strand, within AO353_24525at 5392.522 kb on + strand, within AO353_24525at 5392.522 kb on + strand, within AO353_24525at 5392.522 kb on + strand, within AO353_24525at 5392.523 kb on - strand, within AO353_24525at 5392.523 kb on - strand, within AO353_24525at 5392.523 kb on - strand, within AO353_24525at 5392.590 kb on + strand, within AO353_24525at 5392.590 kb on + strand, within AO353_24525at 5392.591 kb on - strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.595 kb on - strand, within AO353_24525at 5392.595 kb on - strand, within AO353_24525at 5392.695 kb on + strand, within AO353_24525at 5392.695 kb on + strand, within AO353_24525at 5392.696 kb on - strand, within AO353_24525at 5392.696 kb on - strand, within AO353_24525at 5392.696 kb on - strand, within AO353_24525at 5392.724 kb on + strand, within AO353_24525at 5392.725 kb on - strand, within AO353_24525at 5392.725 kb on - strand, within AO353_24525at 5392.725 kb on - strand, within AO353_24525at 5392.725 kb on - strand, within AO353_24525at 5392.778 kb on - strand, within AO353_24525at 5392.778 kb on - strand, within AO353_24525at 5392.784 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.804 kb on - strand, within AO353_24525at 5392.804 kb on - strand, within AO353_24525at 5392.870 kb on + strand, within AO353_24525at 5392.871 kb on - strand, within AO353_24525at 5392.871 kb on - strand, within AO353_24525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
5,390,192 - AO353_24515 0.32 -1.1
5,390,192 - AO353_24515 0.32 -1.5
5,390,192 - AO353_24515 0.32 -1.3
5,390,192 - AO353_24515 0.32 -0.4
5,390,302 + AO353_24515 0.41 -0.5
5,390,303 - AO353_24515 0.41 +0.4
5,390,458 + AO353_24515 0.53 -1.1
5,390,458 + AO353_24515 0.53 +0.9
5,390,458 + AO353_24515 0.53 -1.1
5,390,459 - AO353_24515 0.53 -2.1
5,390,609 + AO353_24515 0.65 -0.2
5,390,656 + AO353_24515 0.68 -0.2
5,390,656 + AO353_24515 0.68 -0.9
5,390,657 - AO353_24515 0.68 -1.3
5,390,666 - AO353_24515 0.69 -3.8
5,390,725 + AO353_24515 0.74 -0.8
5,390,725 + AO353_24515 0.74 -0.4
5,390,725 + AO353_24515 0.74 -0.9
5,390,725 + AO353_24515 0.74 +1.8
5,390,726 - AO353_24515 0.74 +0.9
5,390,726 - AO353_24515 0.74 -1.2
5,390,726 - AO353_24515 0.74 -0.6
5,390,857 + AO353_24515 0.84 -1.6
5,390,857 + AO353_24515 0.84 -0.9
5,390,857 + AO353_24515 0.84 +1.5
5,390,858 - AO353_24515 0.84 +0.3
5,390,858 - AO353_24515 0.84 +2.5
5,390,963 - -0.9
5,390,970 + -1.5
5,390,970 + +0.5
5,390,970 + -1.0
5,390,970 + +0.5
5,390,970 + -0.6
5,390,970 + -1.0
5,390,970 + -0.1
5,390,971 - -1.5
5,390,971 - -0.7
5,390,971 - -1.9
5,390,974 + -2.0
5,390,974 + -0.7
5,390,975 - +1.6
5,390,975 - +1.3
5,390,975 - -0.7
5,391,163 + -0.2
5,391,163 + +0.5
5,391,163 + +2.2
5,391,163 + -0.6
5,391,163 + +1.0
5,391,164 - -0.1
5,391,164 - -0.7
5,391,215 + -0.3
5,391,215 + -0.6
5,391,215 + -1.5
5,391,215 + -1.0
5,391,216 - +0.7
5,391,216 - -1.3
5,391,216 - -0.3
5,391,216 - +1.6
5,391,284 - AO353_24520 0.16 +0.5
5,391,340 - AO353_24520 0.23 +0.8
5,391,382 + AO353_24520 0.29 -0.8
5,391,382 + AO353_24520 0.29 +0.7
5,391,382 + AO353_24520 0.29 -1.1
5,391,383 - +0.9
5,391,383 - AO353_24520 0.29 -1.2
5,391,452 + AO353_24520 0.38 -1.1
5,391,452 + AO353_24520 0.38 -1.0
5,391,452 + AO353_24520 0.38 -1.2
5,391,453 - AO353_24520 0.38 -2.9
5,391,592 + AO353_24520 0.57 -0.7
5,391,592 + AO353_24520 0.57 +0.0
5,391,840 + AO353_24520 0.90 -0.3
5,391,840 + AO353_24520 0.90 -0.5
5,391,840 + AO353_24520 0.90 -2.0
5,391,840 + AO353_24520 0.90 -0.3
5,391,939 + +0.4
5,392,068 - -0.3
5,392,084 + -0.1
5,392,103 + -1.0
5,392,104 - +0.7
5,392,109 + +0.3
5,392,109 + -0.8
5,392,109 + +0.2
5,392,109 + +0.1
5,392,110 - -0.1
5,392,110 - -0.7
5,392,110 - -0.1
5,392,110 - -0.9
5,392,262 + AO353_24525 0.16 -0.5
5,392,262 + AO353_24525 0.16 +0.1
5,392,262 + AO353_24525 0.16 +0.3
5,392,263 - AO353_24525 0.16 +1.5
5,392,263 - AO353_24525 0.16 -0.6
5,392,263 - AO353_24525 0.16 +0.8
5,392,263 - AO353_24525 0.16 +0.6
5,392,263 - AO353_24525 0.16 -0.9
5,392,263 - AO353_24525 0.16 +1.2
5,392,336 + AO353_24525 0.24 -0.9
5,392,336 + AO353_24525 0.24 -0.9
5,392,336 + AO353_24525 0.24 +2.5
5,392,336 + AO353_24525 0.24 +0.7
5,392,336 + AO353_24525 0.24 -1.5
5,392,337 - AO353_24525 0.24 -0.5
5,392,337 - AO353_24525 0.24 +0.7
5,392,522 + AO353_24525 0.45 -0.4
5,392,522 + AO353_24525 0.45 +0.6
5,392,522 + AO353_24525 0.45 -1.7
5,392,523 - AO353_24525 0.45 -0.9
5,392,523 - AO353_24525 0.45 +0.2
5,392,523 - AO353_24525 0.45 +1.9
5,392,590 + AO353_24525 0.52 +0.8
5,392,590 + AO353_24525 0.52 -0.9
5,392,591 - AO353_24525 0.52 +0.9
5,392,594 + AO353_24525 0.52 +1.3
5,392,594 + AO353_24525 0.52 -0.2
5,392,594 + AO353_24525 0.52 -1.2
5,392,594 + AO353_24525 0.52 -1.9
5,392,594 + AO353_24525 0.52 +0.8
5,392,594 + AO353_24525 0.52 +0.5
5,392,595 - AO353_24525 0.53 -0.0
5,392,595 - AO353_24525 0.53 -0.6
5,392,695 + AO353_24525 0.63 -0.9
5,392,695 + AO353_24525 0.63 -0.7
5,392,696 - AO353_24525 0.64 -1.9
5,392,696 - AO353_24525 0.64 +0.1
5,392,696 - AO353_24525 0.64 -0.5
5,392,724 + AO353_24525 0.67 -1.9
5,392,725 - AO353_24525 0.67 -0.9
5,392,725 - AO353_24525 0.67 -0.2
5,392,725 - AO353_24525 0.67 -1.2
5,392,725 - AO353_24525 0.67 +1.5
5,392,778 - AO353_24525 0.73 -3.0
5,392,778 - AO353_24525 0.73 -0.4
5,392,784 + AO353_24525 0.73 -0.1
5,392,801 + AO353_24525 0.75 -0.5
5,392,801 + AO353_24525 0.75 +0.5
5,392,801 + AO353_24525 0.75 -1.0
5,392,801 + AO353_24525 0.75 -1.1
5,392,801 + AO353_24525 0.75 -0.0
5,392,801 + AO353_24525 0.75 +0.1
5,392,802 - AO353_24525 0.75 +1.3
5,392,802 - AO353_24525 0.75 +0.0
5,392,802 - AO353_24525 0.75 -2.7
5,392,802 - AO353_24525 0.75 -0.9
5,392,802 - AO353_24525 0.75 -1.0
5,392,802 - AO353_24525 0.75 +1.5
5,392,802 - AO353_24525 0.75 +0.3
5,392,802 - AO353_24525 0.75 -0.1
5,392,802 - AO353_24525 0.75 -1.2
5,392,802 - AO353_24525 0.75 +1.9
5,392,802 - AO353_24525 0.75 -0.4
5,392,804 - AO353_24525 0.75 -1.3
5,392,804 - AO353_24525 0.75 -0.5
5,392,870 + AO353_24525 0.83 -0.8
5,392,871 - AO353_24525 0.83 -0.6
5,392,871 - AO353_24525 0.83 -0.6

Or see this region's nucleotide sequence