Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23560 and AO353_23565 are separated by 14 nucleotides AO353_23565 and AO353_23570 overlap by 35 nucleotides AO353_23570 and AO353_23575 are separated by 89 nucleotides AO353_23575 and AO353_23580 are separated by 184 nucleotides
AO353_23560: AO353_23560 - lysine decarboxylase, at 5,159,218 to 5,161,473
_23560
AO353_23565: AO353_23565 - GNAT family acetyltransferase, at 5,161,488 to 5,162,102
_23565
AO353_23570: AO353_23570 - LysR family transcriptional regulator, at 5,162,068 to 5,162,961
_23570
AO353_23575: AO353_23575 - hypothetical protein, at 5,163,051 to 5,163,287
_23575
AO353_23580: AO353_23580 - ACP phosphodiesterase, at 5,163,472 to 5,164,029
_23580
Position (kb) 5162
5163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5161.146 kb on + strand, within AO353_23560 at 5161.146 kb on + strand, within AO353_23560 at 5161.147 kb on - strand, within AO353_23560 at 5161.156 kb on + strand, within AO353_23560 at 5161.156 kb on + strand, within AO353_23560 at 5161.157 kb on - strand, within AO353_23560 at 5161.157 kb on - strand, within AO353_23560 at 5161.157 kb on - strand, within AO353_23560 at 5161.157 kb on - strand, within AO353_23560 at 5161.157 kb on - strand, within AO353_23560 at 5161.157 kb on - strand, within AO353_23560 at 5161.351 kb on + strand at 5161.447 kb on + strand at 5161.447 kb on + strand at 5161.447 kb on + strand at 5161.447 kb on + strand at 5161.447 kb on + strand at 5161.448 kb on - strand at 5161.448 kb on - strand at 5161.487 kb on + strand at 5161.488 kb on - strand at 5161.557 kb on + strand, within AO353_23565 at 5161.557 kb on + strand, within AO353_23565 at 5161.557 kb on + strand, within AO353_23565 at 5161.557 kb on + strand, within AO353_23565 at 5161.558 kb on - strand, within AO353_23565 at 5161.558 kb on - strand, within AO353_23565 at 5161.558 kb on - strand, within AO353_23565 at 5161.558 kb on - strand, within AO353_23565 at 5161.558 kb on - strand, within AO353_23565 at 5161.558 kb on - strand, within AO353_23565 at 5161.558 kb on - strand, within AO353_23565 at 5161.558 kb on - strand, within AO353_23565 at 5161.558 kb on - strand, within AO353_23565 at 5161.559 kb on + strand, within AO353_23565 at 5161.559 kb on + strand, within AO353_23565 at 5161.559 kb on + strand, within AO353_23565 at 5161.559 kb on + strand, within AO353_23565 at 5161.559 kb on + strand, within AO353_23565 at 5161.560 kb on - strand, within AO353_23565 at 5161.560 kb on - strand, within AO353_23565 at 5161.560 kb on - strand, within AO353_23565 at 5161.560 kb on - strand, within AO353_23565 at 5161.560 kb on - strand, within AO353_23565 at 5161.775 kb on + strand, within AO353_23565 at 5161.919 kb on + strand, within AO353_23565 at 5161.920 kb on - strand, within AO353_23565 at 5161.944 kb on + strand, within AO353_23565 at 5161.959 kb on + strand, within AO353_23565 at 5161.959 kb on + strand, within AO353_23565 at 5161.959 kb on + strand, within AO353_23565 at 5162.103 kb on + strand at 5162.104 kb on - strand at 5162.162 kb on + strand, within AO353_23570 at 5162.233 kb on - strand, within AO353_23570 at 5162.700 kb on - strand, within AO353_23570 at 5162.700 kb on - strand, within AO353_23570 at 5162.707 kb on + strand, within AO353_23570 at 5162.707 kb on + strand, within AO353_23570 at 5162.748 kb on - strand, within AO353_23570 at 5162.748 kb on - strand, within AO353_23570 at 5162.953 kb on + strand at 5162.954 kb on - strand at 5162.954 kb on - strand at 5163.027 kb on - strand at 5163.027 kb on - strand at 5163.027 kb on - strand at 5163.041 kb on + strand at 5163.053 kb on - strand at 5163.109 kb on - strand, within AO353_23575 at 5163.109 kb on - strand, within AO353_23575 at 5163.158 kb on + strand, within AO353_23575 at 5163.158 kb on + strand, within AO353_23575 at 5163.158 kb on + strand, within AO353_23575 at 5163.159 kb on - strand, within AO353_23575 at 5163.159 kb on - strand, within AO353_23575 at 5163.159 kb on - strand, within AO353_23575 at 5163.160 kb on + strand, within AO353_23575 at 5163.160 kb on + strand, within AO353_23575 at 5163.161 kb on - strand, within AO353_23575 at 5163.161 kb on - strand, within AO353_23575 at 5163.161 kb on - strand, within AO353_23575 at 5163.161 kb on - strand, within AO353_23575 at 5163.161 kb on - strand, within AO353_23575 at 5163.233 kb on - strand, within AO353_23575 at 5163.276 kb on + strand at 5163.276 kb on + strand at 5163.277 kb on - strand at 5163.294 kb on - strand at 5163.308 kb on + strand at 5163.308 kb on + strand at 5163.308 kb on + strand at 5163.308 kb on + strand at 5163.308 kb on + strand at 5163.308 kb on + strand at 5163.308 kb on + strand at 5163.309 kb on - strand at 5163.344 kb on - strand at 5163.352 kb on + strand at 5163.353 kb on - strand at 5163.353 kb on - strand at 5163.362 kb on + strand at 5163.378 kb on + strand at 5163.378 kb on + strand at 5163.378 kb on + strand at 5163.379 kb on - strand at 5163.379 kb on - strand at 5163.390 kb on - strand at 5163.390 kb on - strand at 5163.411 kb on + strand at 5163.411 kb on + strand at 5163.412 kb on - strand at 5163.412 kb on - strand at 5163.412 kb on - strand at 5163.412 kb on - strand at 5163.430 kb on + strand at 5163.430 kb on + strand at 5163.430 kb on + strand at 5163.430 kb on + strand at 5163.430 kb on + strand at 5163.430 kb on + strand at 5163.431 kb on - strand at 5163.431 kb on - strand at 5163.431 kb on - strand at 5163.431 kb on - strand at 5163.431 kb on - strand at 5163.431 kb on - strand at 5163.431 kb on - strand at 5163.431 kb on - strand at 5163.431 kb on - strand at 5163.432 kb on + strand at 5163.432 kb on + strand at 5163.432 kb on + strand at 5163.432 kb on + strand at 5163.432 kb on + strand at 5163.433 kb on - strand at 5163.433 kb on - strand at 5163.433 kb on - strand at 5163.433 kb on - strand at 5163.436 kb on + strand at 5163.436 kb on + strand at 5163.436 kb on + strand at 5163.436 kb on + strand at 5163.437 kb on - strand at 5163.457 kb on - strand at 5163.486 kb on + strand at 5163.487 kb on - strand at 5163.614 kb on - strand, within AO353_23580 at 5163.614 kb on - strand, within AO353_23580 at 5163.614 kb on - strand, within AO353_23580 at 5163.632 kb on + strand, within AO353_23580 at 5163.633 kb on - strand, within AO353_23580 at 5163.633 kb on - strand, within AO353_23580 at 5163.633 kb on - strand, within AO353_23580 at 5163.649 kb on + strand, within AO353_23580 at 5163.649 kb on + strand, within AO353_23580 at 5163.650 kb on - strand, within AO353_23580 at 5163.650 kb on - strand, within AO353_23580 at 5163.650 kb on - strand, within AO353_23580 at 5163.710 kb on - strand, within AO353_23580 at 5163.710 kb on - strand, within AO353_23580 at 5163.710 kb on - strand, within AO353_23580 at 5163.711 kb on + strand, within AO353_23580 at 5163.712 kb on - strand, within AO353_23580 at 5163.843 kb on + strand, within AO353_23580 at 5163.907 kb on + strand, within AO353_23580 at 5163.907 kb on + strand, within AO353_23580 at 5163.908 kb on - strand, within AO353_23580 at 5163.908 kb on - strand, within AO353_23580
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 5,161,146 + AO353_23560 0.85 -1.2 5,161,146 + AO353_23560 0.85 -1.2 5,161,147 - AO353_23560 0.86 -0.3 5,161,156 + AO353_23560 0.86 -0.9 5,161,156 + AO353_23560 0.86 -0.5 5,161,157 - AO353_23560 0.86 -2.1 5,161,157 - AO353_23560 0.86 +0.1 5,161,157 - AO353_23560 0.86 -1.2 5,161,157 - AO353_23560 0.86 +1.1 5,161,157 - AO353_23560 0.86 -1.8 5,161,157 - AO353_23560 0.86 -0.9 5,161,351 + -0.6 5,161,447 + -0.3 5,161,447 + -1.5 5,161,447 + +2.5 5,161,447 + +1.4 5,161,447 + -0.6 5,161,448 - +0.4 5,161,448 - +0.6 5,161,487 + -0.1 5,161,488 - +0.5 5,161,557 + AO353_23565 0.11 -0.7 5,161,557 + AO353_23565 0.11 -1.4 5,161,557 + AO353_23565 0.11 +2.8 5,161,557 + AO353_23565 0.11 +0.7 5,161,558 - AO353_23565 0.11 +0.5 5,161,558 - AO353_23565 0.11 +1.1 5,161,558 - AO353_23565 0.11 -0.8 5,161,558 - AO353_23565 0.11 -0.5 5,161,558 - AO353_23565 0.11 +0.4 5,161,558 - AO353_23565 0.11 +0.7 5,161,558 - AO353_23565 0.11 +0.5 5,161,558 - AO353_23565 0.11 +0.2 5,161,558 - AO353_23565 0.11 -1.0 5,161,559 + AO353_23565 0.12 -1.0 5,161,559 + AO353_23565 0.12 -0.8 5,161,559 + AO353_23565 0.12 -0.8 5,161,559 + AO353_23565 0.12 -1.6 5,161,559 + AO353_23565 0.12 +0.4 5,161,560 - AO353_23565 0.12 +0.4 5,161,560 - AO353_23565 0.12 -0.1 5,161,560 - AO353_23565 0.12 -0.3 5,161,560 - AO353_23565 0.12 -0.9 5,161,560 - AO353_23565 0.12 -1.7 5,161,775 + AO353_23565 0.47 -0.6 5,161,919 + AO353_23565 0.70 +0.1 5,161,920 - AO353_23565 0.70 +0.7 5,161,944 + AO353_23565 0.74 +0.5 5,161,959 + AO353_23565 0.77 -2.1 5,161,959 + AO353_23565 0.77 +1.5 5,161,959 + AO353_23565 0.77 +1.0 5,162,103 + -0.2 5,162,104 - +0.5 5,162,162 + AO353_23570 0.11 -1.2 5,162,233 - AO353_23570 0.18 -1.9 5,162,700 - AO353_23570 0.71 -2.3 5,162,700 - AO353_23570 0.71 -0.8 5,162,707 + AO353_23570 0.71 -0.7 5,162,707 + AO353_23570 0.71 -1.2 5,162,748 - AO353_23570 0.76 +0.5 5,162,748 - AO353_23570 0.76 -0.9 5,162,953 + -0.4 5,162,954 - -0.7 5,162,954 - +0.0 5,163,027 - +1.4 5,163,027 - -0.3 5,163,027 - +1.6 5,163,041 + +1.0 5,163,053 - -2.0 5,163,109 - AO353_23575 0.24 -1.6 5,163,109 - AO353_23575 0.24 -1.6 5,163,158 + AO353_23575 0.45 -1.9 5,163,158 + AO353_23575 0.45 -0.4 5,163,158 + AO353_23575 0.45 +1.1 5,163,159 - AO353_23575 0.46 -0.1 5,163,159 - AO353_23575 0.46 -0.7 5,163,159 - AO353_23575 0.46 +0.1 5,163,160 + AO353_23575 0.46 +0.0 5,163,160 + AO353_23575 0.46 -0.1 5,163,161 - AO353_23575 0.46 -1.2 5,163,161 - AO353_23575 0.46 -1.4 5,163,161 - AO353_23575 0.46 -0.4 5,163,161 - AO353_23575 0.46 -0.1 5,163,161 - AO353_23575 0.46 -0.4 5,163,233 - AO353_23575 0.77 -0.7 5,163,276 + +1.1 5,163,276 + -2.4 5,163,277 - +0.8 5,163,294 - +0.1 5,163,308 + +0.7 5,163,308 + -0.3 5,163,308 + +0.1 5,163,308 + -0.6 5,163,308 + -1.1 5,163,308 + -0.3 5,163,308 + +4.1 5,163,309 - -1.8 5,163,344 - +0.9 5,163,352 + +1.1 5,163,353 - -1.9 5,163,353 - +0.2 5,163,362 + +0.5 5,163,378 + +1.0 5,163,378 + -0.9 5,163,378 + -1.2 5,163,379 - -0.3 5,163,379 - +0.7 5,163,390 - +1.1 5,163,390 - -0.5 5,163,411 + -0.3 5,163,411 + -1.5 5,163,412 - -0.7 5,163,412 - -0.7 5,163,412 - +1.2 5,163,412 - -0.9 5,163,430 + -0.3 5,163,430 + -1.0 5,163,430 + +1.1 5,163,430 + +1.9 5,163,430 + -0.9 5,163,430 + -1.0 5,163,431 - +1.5 5,163,431 - -0.1 5,163,431 - -0.9 5,163,431 - -1.4 5,163,431 - -0.5 5,163,431 - +0.0 5,163,431 - -2.9 5,163,431 - -0.3 5,163,431 - -0.7 5,163,432 + +0.7 5,163,432 + -0.1 5,163,432 + -0.4 5,163,432 + -0.3 5,163,432 + -1.0 5,163,433 - -0.1 5,163,433 - +1.1 5,163,433 - -1.3 5,163,433 - +0.2 5,163,436 + -0.1 5,163,436 + -0.3 5,163,436 + -0.1 5,163,436 + +0.5 5,163,437 - +0.3 5,163,457 - +0.5 5,163,486 + -0.2 5,163,487 - -1.4 5,163,614 - AO353_23580 0.25 +0.5 5,163,614 - AO353_23580 0.25 +0.1 5,163,614 - AO353_23580 0.25 +0.2 5,163,632 + AO353_23580 0.29 +0.3 5,163,633 - AO353_23580 0.29 -0.0 5,163,633 - AO353_23580 0.29 -1.1 5,163,633 - AO353_23580 0.29 +0.2 5,163,649 + AO353_23580 0.32 +0.1 5,163,649 + AO353_23580 0.32 +0.5 5,163,650 - AO353_23580 0.32 -3.1 5,163,650 - AO353_23580 0.32 -1.0 5,163,650 - AO353_23580 0.32 +0.7 5,163,710 - AO353_23580 0.43 -0.3 5,163,710 - AO353_23580 0.43 +0.5 5,163,710 - AO353_23580 0.43 -0.3 5,163,711 + AO353_23580 0.43 -0.9 5,163,712 - AO353_23580 0.43 -1.1 5,163,843 + AO353_23580 0.66 -0.8 5,163,907 + AO353_23580 0.78 -1.2 5,163,907 + AO353_23580 0.78 -0.6 5,163,908 - AO353_23580 0.78 -2.1 5,163,908 - AO353_23580 0.78 +0.1
Or see this region's nucleotide sequence