Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23295

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23290 and AO353_23295 overlap by 4 nucleotides AO353_23290: AO353_23290 - cystathionine beta-synthase, at 5,107,927 to 5,109,303 _23290 AO353_23295: AO353_23295 - cystathionine beta-lyase, at 5,109,300 to 5,110,478 _23295 Position (kb) 5109 5110 5111Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5108.309 kb on - strand, within AO353_23290at 5108.312 kb on - strand, within AO353_23290at 5108.573 kb on - strand, within AO353_23290at 5108.678 kb on - strand, within AO353_23290at 5108.760 kb on + strand, within AO353_23290at 5108.760 kb on + strand, within AO353_23290at 5108.761 kb on - strand, within AO353_23290at 5108.863 kb on + strand, within AO353_23290at 5108.863 kb on + strand, within AO353_23290at 5108.863 kb on + strand, within AO353_23290at 5108.863 kb on + strand, within AO353_23290at 5108.863 kb on + strand, within AO353_23290at 5108.864 kb on - strand, within AO353_23290at 5108.864 kb on - strand, within AO353_23290at 5108.864 kb on - strand, within AO353_23290at 5109.085 kb on - strand, within AO353_23290at 5109.123 kb on + strand, within AO353_23290at 5109.124 kb on - strand, within AO353_23290at 5109.124 kb on - strand, within AO353_23290at 5109.297 kb on + strandat 5109.297 kb on + strandat 5109.297 kb on + strandat 5109.297 kb on + strandat 5109.297 kb on + strandat 5109.298 kb on - strandat 5109.298 kb on - strandat 5109.406 kb on - strandat 5109.406 kb on - strandat 5109.406 kb on - strandat 5109.420 kb on + strand, within AO353_23295at 5109.420 kb on + strand, within AO353_23295at 5109.420 kb on + strand, within AO353_23295at 5109.420 kb on + strand, within AO353_23295at 5109.442 kb on + strand, within AO353_23295at 5109.443 kb on - strand, within AO353_23295at 5109.460 kb on - strand, within AO353_23295at 5109.621 kb on + strand, within AO353_23295at 5109.622 kb on - strand, within AO353_23295at 5109.622 kb on - strand, within AO353_23295at 5109.622 kb on - strand, within AO353_23295at 5109.866 kb on - strand, within AO353_23295at 5109.918 kb on + strand, within AO353_23295at 5110.152 kb on + strand, within AO353_23295at 5110.152 kb on + strand, within AO353_23295at 5110.153 kb on - strand, within AO353_23295at 5110.153 kb on - strand, within AO353_23295at 5110.405 kb on + strandat 5110.405 kb on + strandat 5110.406 kb on - strandat 5110.539 kb on - strandat 5110.539 kb on - strandat 5110.539 kb on - strandat 5110.543 kb on + strandat 5110.544 kb on - strandat 5110.544 kb on - strandat 5110.544 kb on - strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.660 kb on + strandat 5110.661 kb on - strandat 5110.661 kb on - strandat 5110.661 kb on - strandat 5110.661 kb on - strandat 5110.661 kb on - strandat 5110.661 kb on - strandat 5110.661 kb on - strandat 5110.661 kb on - strandat 5110.661 kb on - strandat 5110.662 kb on + strandat 5110.662 kb on + strandat 5110.662 kb on + strandat 5110.662 kb on + strandat 5110.662 kb on + strandat 5110.663 kb on - strandat 5110.663 kb on - strandat 5110.663 kb on - strandat 5110.663 kb on - strandat 5110.663 kb on - strandat 5110.663 kb on - strandat 5110.663 kb on - strandat 5110.663 kb on - strandat 5110.663 kb on - strandat 5110.663 kb on - strandat 5110.836 kb on - strandat 5110.954 kb on + strandat 5110.955 kb on - strandat 5111.032 kb on + strandat 5111.070 kb on + strandat 5111.070 kb on + strandat 5111.070 kb on + strandat 5111.070 kb on + strandat 5111.070 kb on + strandat 5111.070 kb on + strandat 5111.071 kb on - strandat 5111.071 kb on - strandat 5111.071 kb on - strandat 5111.071 kb on - strandat 5111.071 kb on - strandat 5111.071 kb on - strandat 5111.084 kb on + strandat 5111.084 kb on + strandat 5111.085 kb on - strandat 5111.085 kb on - strandat 5111.085 kb on - strandat 5111.251 kb on - strandat 5111.443 kb on + strandat 5111.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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5,108,309 - AO353_23290 0.28 +0.5
5,108,312 - AO353_23290 0.28 +2.5
5,108,573 - AO353_23290 0.47 +0.1
5,108,678 - AO353_23290 0.55 -0.1
5,108,760 + AO353_23290 0.60 -1.0
5,108,760 + AO353_23290 0.60 -0.0
5,108,761 - AO353_23290 0.61 -0.9
5,108,863 + AO353_23290 0.68 -1.1
5,108,863 + AO353_23290 0.68 -1.2
5,108,863 + AO353_23290 0.68 -0.2
5,108,863 + AO353_23290 0.68 +0.2
5,108,863 + AO353_23290 0.68 -0.8
5,108,864 - AO353_23290 0.68 -0.1
5,108,864 - AO353_23290 0.68 +0.5
5,108,864 - AO353_23290 0.68 +1.2
5,109,085 - AO353_23290 0.84 +1.5
5,109,123 + AO353_23290 0.87 -2.2
5,109,124 - AO353_23290 0.87 -0.4
5,109,124 - AO353_23290 0.87 -0.5
5,109,297 + -0.6
5,109,297 + -0.7
5,109,297 + -0.8
5,109,297 + -0.0
5,109,297 + +0.8
5,109,298 - -0.2
5,109,298 - -1.5
5,109,406 - +0.8
5,109,406 - -1.1
5,109,406 - -0.1
5,109,420 + AO353_23295 0.10 -2.3
5,109,420 + AO353_23295 0.10 +1.4
5,109,420 + AO353_23295 0.10 -1.8
5,109,420 + AO353_23295 0.10 +1.9
5,109,442 + AO353_23295 0.12 -1.5
5,109,443 - AO353_23295 0.12 -1.2
5,109,460 - AO353_23295 0.14 -2.0
5,109,621 + AO353_23295 0.27 -0.4
5,109,622 - AO353_23295 0.27 -2.4
5,109,622 - AO353_23295 0.27 +0.7
5,109,622 - AO353_23295 0.27 -1.9
5,109,866 - AO353_23295 0.48 -0.2
5,109,918 + AO353_23295 0.52 +0.8
5,110,152 + AO353_23295 0.72 -0.3
5,110,152 + AO353_23295 0.72 -2.1
5,110,153 - AO353_23295 0.72 -0.7
5,110,153 - AO353_23295 0.72 +2.5
5,110,405 + -0.3
5,110,405 + +0.4
5,110,406 - +0.5
5,110,539 - -0.1
5,110,539 - +0.4
5,110,539 - +1.1
5,110,543 + -0.3
5,110,544 - -0.5
5,110,544 - +0.5
5,110,544 - -0.8
5,110,660 + -0.3
5,110,660 + +0.5
5,110,660 + -1.5
5,110,660 + -0.8
5,110,660 + +0.2
5,110,660 + -0.2
5,110,660 + -1.2
5,110,660 + +0.6
5,110,660 + -1.7
5,110,660 + +0.5
5,110,660 + -1.2
5,110,660 + -1.6
5,110,661 - -0.9
5,110,661 - -1.1
5,110,661 - -2.1
5,110,661 - +0.0
5,110,661 - +1.5
5,110,661 - -0.3
5,110,661 - -1.4
5,110,661 - +0.2
5,110,661 - -0.4
5,110,662 + -1.6
5,110,662 + +3.5
5,110,662 + -0.3
5,110,662 + -1.1
5,110,662 + -0.1
5,110,663 - -0.3
5,110,663 - -0.6
5,110,663 - +2.7
5,110,663 - -0.7
5,110,663 - -1.3
5,110,663 - -1.2
5,110,663 - +0.1
5,110,663 - +1.3
5,110,663 - +0.9
5,110,663 - -0.4
5,110,836 - -1.2
5,110,954 + +1.2
5,110,955 - +0.6
5,111,032 + -1.1
5,111,070 + -0.8
5,111,070 + +0.9
5,111,070 + -1.0
5,111,070 + -1.5
5,111,070 + -1.1
5,111,070 + -0.8
5,111,071 - +1.0
5,111,071 - -1.4
5,111,071 - -0.7
5,111,071 - +0.9
5,111,071 - -0.5
5,111,071 - +0.9
5,111,084 + +0.2
5,111,084 + +0.0
5,111,085 - -0.6
5,111,085 - -0.4
5,111,085 - +0.0
5,111,251 - -0.8
5,111,443 + -1.0
5,111,444 - -1.2

Or see this region's nucleotide sequence