Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21705

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21695 and AO353_21700 are separated by 77 nucleotidesAO353_21700 and AO353_21705 are separated by 172 nucleotidesAO353_21705 and AO353_21710 are separated by 433 nucleotides AO353_21695: AO353_21695 - MerR family transcriptional regulator, at 4,758,559 to 4,758,966 _21695 AO353_21700: AO353_21700 - thioredoxin, at 4,759,044 to 4,759,466 _21700 AO353_21705: AO353_21705 - hypothetical protein, at 4,759,639 to 4,760,052 _21705 AO353_21710: AO353_21710 - ABC transporter for D-glucosamine, periplasmic substrate-binding component (from data), at 4,760,486 to 4,761,334 _21710 Position (kb) 4759 4760 4761Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4759.191 kb on - strand, within AO353_21700at 4759.231 kb on + strand, within AO353_21700at 4759.231 kb on + strand, within AO353_21700at 4759.231 kb on + strand, within AO353_21700at 4759.286 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.298 kb on - strand, within AO353_21700at 4759.298 kb on - strand, within AO353_21700at 4759.298 kb on - strand, within AO353_21700at 4759.316 kb on + strand, within AO353_21700at 4759.317 kb on - strand, within AO353_21700at 4759.318 kb on + strand, within AO353_21700at 4759.318 kb on + strand, within AO353_21700at 4759.319 kb on - strand, within AO353_21700at 4759.319 kb on - strand, within AO353_21700at 4759.319 kb on - strand, within AO353_21700at 4759.342 kb on - strand, within AO353_21700at 4759.366 kb on + strand, within AO353_21700at 4759.366 kb on + strand, within AO353_21700at 4759.388 kb on - strand, within AO353_21700at 4759.388 kb on - strand, within AO353_21700at 4759.388 kb on - strand, within AO353_21700at 4759.406 kb on - strand, within AO353_21700at 4759.471 kb on + strandat 4759.472 kb on - strandat 4759.472 kb on - strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.503 kb on - strandat 4759.503 kb on - strandat 4759.503 kb on - strandat 4759.503 kb on - strandat 4759.506 kb on + strandat 4759.506 kb on + strandat 4759.506 kb on + strandat 4759.506 kb on + strandat 4759.507 kb on - strandat 4759.507 kb on - strandat 4759.507 kb on - strandat 4759.562 kb on + strandat 4759.563 kb on - strandat 4759.563 kb on - strandat 4759.563 kb on - strandat 4759.570 kb on - strandat 4759.903 kb on - strand, within AO353_21705at 4759.915 kb on - strand, within AO353_21705at 4759.915 kb on - strand, within AO353_21705at 4759.915 kb on - strand, within AO353_21705at 4759.925 kb on + strand, within AO353_21705at 4759.926 kb on - strand, within AO353_21705at 4759.926 kb on - strand, within AO353_21705at 4759.944 kb on - strand, within AO353_21705at 4759.956 kb on - strand, within AO353_21705at 4759.977 kb on + strand, within AO353_21705at 4759.977 kb on + strand, within AO353_21705at 4759.977 kb on + strand, within AO353_21705at 4759.977 kb on + strand, within AO353_21705at 4759.977 kb on + strand, within AO353_21705at 4759.977 kb on + strand, within AO353_21705at 4759.977 kb on + strand, within AO353_21705at 4759.978 kb on - strand, within AO353_21705at 4759.978 kb on - strand, within AO353_21705at 4759.978 kb on - strand, within AO353_21705at 4759.978 kb on - strand, within AO353_21705at 4759.978 kb on - strand, within AO353_21705at 4760.029 kb on - strandat 4760.044 kb on + strandat 4760.045 kb on - strandat 4760.066 kb on + strandat 4760.066 kb on + strandat 4760.066 kb on + strandat 4760.066 kb on + strandat 4760.066 kb on + strandat 4760.067 kb on - strandat 4760.133 kb on + strandat 4760.191 kb on + strandat 4760.192 kb on - strandat 4760.214 kb on - strandat 4760.510 kb on - strandat 4760.510 kb on - strandat 4760.862 kb on - strand, within AO353_21710at 4760.903 kb on + strand, within AO353_21710at 4760.903 kb on + strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.970 kb on - strand, within AO353_21710at 4761.021 kb on - strand, within AO353_21710at 4761.021 kb on - strand, within AO353_21710at 4761.021 kb on - strand, within AO353_21710at 4761.041 kb on + strand, within AO353_21710at 4761.042 kb on - strand, within AO353_21710at 4761.042 kb on - strand, within AO353_21710at 4761.042 kb on - strand, within AO353_21710

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,759,191 - AO353_21700 0.35 +1.1
4,759,231 + AO353_21700 0.44 -0.4
4,759,231 + AO353_21700 0.44 -1.8
4,759,231 + AO353_21700 0.44 +0.3
4,759,286 + AO353_21700 0.57 -0.4
4,759,297 + AO353_21700 0.60 +0.5
4,759,297 + AO353_21700 0.60 -0.0
4,759,297 + AO353_21700 0.60 +1.3
4,759,297 + AO353_21700 0.60 -1.2
4,759,297 + AO353_21700 0.60 -0.4
4,759,298 - AO353_21700 0.60 +1.6
4,759,298 - AO353_21700 0.60 -0.9
4,759,298 - AO353_21700 0.60 +0.5
4,759,316 + AO353_21700 0.64 -3.0
4,759,317 - AO353_21700 0.65 -0.2
4,759,318 + AO353_21700 0.65 +0.1
4,759,318 + AO353_21700 0.65 +1.1
4,759,319 - AO353_21700 0.65 -0.2
4,759,319 - AO353_21700 0.65 -0.4
4,759,319 - AO353_21700 0.65 -0.9
4,759,342 - AO353_21700 0.70 +1.4
4,759,366 + AO353_21700 0.76 -0.9
4,759,366 + AO353_21700 0.76 -1.1
4,759,388 - AO353_21700 0.81 +1.2
4,759,388 - AO353_21700 0.81 +0.5
4,759,388 - AO353_21700 0.81 -1.4
4,759,406 - AO353_21700 0.86 -0.5
4,759,471 + -1.1
4,759,472 - +0.3
4,759,472 - -1.5
4,759,502 + +0.1
4,759,502 + +0.2
4,759,502 + +0.5
4,759,502 + +1.3
4,759,502 + -1.1
4,759,502 + +0.3
4,759,502 + -0.8
4,759,502 + -0.1
4,759,502 + +0.1
4,759,503 - -0.4
4,759,503 - +0.6
4,759,503 - -1.3
4,759,503 - -1.6
4,759,506 + +0.6
4,759,506 + -0.0
4,759,506 + +1.1
4,759,506 + +1.2
4,759,507 - +0.4
4,759,507 - +0.6
4,759,507 - -1.1
4,759,562 + -1.8
4,759,563 - -1.8
4,759,563 - -1.6
4,759,563 - +0.5
4,759,570 - +0.1
4,759,903 - AO353_21705 0.64 -0.1
4,759,915 - AO353_21705 0.67 -0.2
4,759,915 - AO353_21705 0.67 -1.2
4,759,915 - AO353_21705 0.67 -0.1
4,759,925 + AO353_21705 0.69 -0.3
4,759,926 - AO353_21705 0.69 -1.0
4,759,926 - AO353_21705 0.69 +0.3
4,759,944 - AO353_21705 0.74 +0.3
4,759,956 - AO353_21705 0.77 -0.7
4,759,977 + AO353_21705 0.82 -1.1
4,759,977 + AO353_21705 0.82 -0.1
4,759,977 + AO353_21705 0.82 +1.6
4,759,977 + AO353_21705 0.82 +0.5
4,759,977 + AO353_21705 0.82 -0.6
4,759,977 + AO353_21705 0.82 +2.3
4,759,977 + AO353_21705 0.82 -2.2
4,759,978 - AO353_21705 0.82 -0.4
4,759,978 - AO353_21705 0.82 -0.4
4,759,978 - AO353_21705 0.82 +0.0
4,759,978 - AO353_21705 0.82 -0.8
4,759,978 - AO353_21705 0.82 -2.0
4,760,029 - -1.5
4,760,044 + +1.6
4,760,045 - -0.3
4,760,066 + -1.3
4,760,066 + +0.0
4,760,066 + -1.4
4,760,066 + -0.1
4,760,066 + -0.4
4,760,067 - +0.9
4,760,133 + -0.4
4,760,191 + -1.0
4,760,192 - +0.6
4,760,214 - -1.2
4,760,510 - +1.3
4,760,510 - +1.3
4,760,862 - AO353_21710 0.44 -1.3
4,760,903 + AO353_21710 0.49 -0.1
4,760,903 + AO353_21710 0.49 -0.4
4,760,904 - AO353_21710 0.49 -2.0
4,760,904 - AO353_21710 0.49 -1.1
4,760,904 - AO353_21710 0.49 -1.3
4,760,904 - AO353_21710 0.49 +1.1
4,760,904 - AO353_21710 0.49 +0.0
4,760,904 - AO353_21710 0.49 +1.4
4,760,904 - AO353_21710 0.49 -0.7
4,760,970 - AO353_21710 0.57 +0.0
4,761,021 - AO353_21710 0.63 -1.3
4,761,021 - AO353_21710 0.63 -0.7
4,761,021 - AO353_21710 0.63 +0.6
4,761,041 + AO353_21710 0.65 -0.8
4,761,042 - AO353_21710 0.65 +1.2
4,761,042 - AO353_21710 0.65 -0.4
4,761,042 - AO353_21710 0.65 -2.4

Or see this region's nucleotide sequence