Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19900

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19895 and AO353_19900 are separated by 302 nucleotidesAO353_19900 and AO353_19905 are separated by 74 nucleotidesAO353_19905 and AO353_19910 overlap by 4 nucleotides AO353_19895: AO353_19895 - ornithine aminotransferase, at 4,373,377 to 4,374,024 _19895 AO353_19900: AO353_19900 - universal stress protein UspA, at 4,374,327 to 4,375,238 _19900 AO353_19905: AO353_19905 - ABC transporter, at 4,375,313 to 4,376,032 _19905 AO353_19910: AO353_19910 - glycosyl hydrolase family 18, at 4,376,029 to 4,376,916 _19910 Position (kb) 4374 4375 4376Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4373.500 kb on + strand, within AO353_19895at 4373.500 kb on + strand, within AO353_19895at 4373.501 kb on - strand, within AO353_19895at 4373.501 kb on - strand, within AO353_19895at 4373.501 kb on - strand, within AO353_19895at 4373.514 kb on + strand, within AO353_19895at 4373.515 kb on - strand, within AO353_19895at 4373.594 kb on + strand, within AO353_19895at 4373.669 kb on + strand, within AO353_19895at 4373.669 kb on + strand, within AO353_19895at 4373.713 kb on + strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strandat 4373.714 kb on - strand, within AO353_19895at 4373.714 kb on - strand, within AO353_19895at 4373.735 kb on - strand, within AO353_19895at 4373.827 kb on + strand, within AO353_19895at 4373.827 kb on + strand, within AO353_19895at 4373.827 kb on + strand, within AO353_19895at 4373.828 kb on - strand, within AO353_19895at 4373.828 kb on - strand, within AO353_19895at 4373.848 kb on + strand, within AO353_19895at 4373.849 kb on - strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.897 kb on + strand, within AO353_19895at 4373.898 kb on - strand, within AO353_19895at 4373.898 kb on - strand, within AO353_19895at 4373.898 kb on - strand, within AO353_19895at 4373.898 kb on - strand, within AO353_19895at 4373.898 kb on - strand, within AO353_19895at 4374.086 kb on + strandat 4374.094 kb on + strandat 4374.115 kb on + strandat 4374.184 kb on + strandat 4374.215 kb on + strandat 4374.347 kb on - strandat 4374.451 kb on - strand, within AO353_19900at 4374.451 kb on - strand, within AO353_19900at 4374.516 kb on + strand, within AO353_19900at 4374.517 kb on - strand, within AO353_19900at 4374.541 kb on + strand, within AO353_19900at 4374.542 kb on - strand, within AO353_19900at 4374.583 kb on + strand, within AO353_19900at 4374.583 kb on + strand, within AO353_19900at 4374.583 kb on + strand, within AO353_19900at 4374.583 kb on + strand, within AO353_19900at 4374.583 kb on + strand, within AO353_19900at 4374.584 kb on - strand, within AO353_19900at 4374.584 kb on - strand, within AO353_19900at 4374.584 kb on - strand, within AO353_19900at 4374.584 kb on - strand, within AO353_19900at 4374.633 kb on + strand, within AO353_19900at 4374.633 kb on + strand, within AO353_19900at 4374.633 kb on + strand, within AO353_19900at 4374.633 kb on + strand, within AO353_19900at 4374.634 kb on - strand, within AO353_19900at 4374.634 kb on - strand, within AO353_19900at 4374.637 kb on + strand, within AO353_19900at 4374.637 kb on + strand, within AO353_19900at 4374.637 kb on + strand, within AO353_19900at 4374.638 kb on - strand, within AO353_19900at 4374.638 kb on - strand, within AO353_19900at 4374.638 kb on - strand, within AO353_19900at 4374.638 kb on - strand, within AO353_19900at 4374.673 kb on + strand, within AO353_19900at 4374.673 kb on + strand, within AO353_19900at 4374.673 kb on + strand, within AO353_19900at 4374.673 kb on + strand, within AO353_19900at 4374.673 kb on + strand, within AO353_19900at 4374.673 kb on + strand, within AO353_19900at 4374.673 kb on + strand, within AO353_19900at 4374.673 kb on + strand, within AO353_19900at 4374.673 kb on + strand, within AO353_19900at 4374.674 kb on - strand, within AO353_19900at 4374.674 kb on - strandat 4374.674 kb on - strand, within AO353_19900at 4374.674 kb on - strand, within AO353_19900at 4374.674 kb on - strand, within AO353_19900at 4374.674 kb on - strand, within AO353_19900at 4374.674 kb on - strand, within AO353_19900at 4374.674 kb on - strand, within AO353_19900at 4374.674 kb on - strand, within AO353_19900at 4374.674 kb on - strand, within AO353_19900at 4374.674 kb on - strand, within AO353_19900at 4374.682 kb on + strand, within AO353_19900at 4374.682 kb on + strand, within AO353_19900at 4374.682 kb on + strand, within AO353_19900at 4374.682 kb on + strand, within AO353_19900at 4374.683 kb on - strand, within AO353_19900at 4374.683 kb on - strand, within AO353_19900at 4374.705 kb on + strand, within AO353_19900at 4374.705 kb on + strand, within AO353_19900at 4374.705 kb on + strand, within AO353_19900at 4374.705 kb on + strand, within AO353_19900at 4374.706 kb on - strand, within AO353_19900at 4374.706 kb on - strand, within AO353_19900at 4374.706 kb on - strand, within AO353_19900at 4374.706 kb on - strand, within AO353_19900at 4374.727 kb on + strand, within AO353_19900at 4374.727 kb on + strand, within AO353_19900at 4374.728 kb on - strand, within AO353_19900at 4374.793 kb on + strand, within AO353_19900at 4374.794 kb on - strand, within AO353_19900at 4374.898 kb on + strand, within AO353_19900at 4374.898 kb on + strand, within AO353_19900at 4374.898 kb on + strand, within AO353_19900at 4374.957 kb on + strand, within AO353_19900at 4374.957 kb on + strand, within AO353_19900at 4374.957 kb on + strand, within AO353_19900at 4374.958 kb on - strand, within AO353_19900at 4374.958 kb on - strand, within AO353_19900at 4374.958 kb on - strand, within AO353_19900at 4374.958 kb on - strand, within AO353_19900at 4375.019 kb on + strand, within AO353_19900at 4375.036 kb on - strand, within AO353_19900at 4375.036 kb on - strand, within AO353_19900at 4375.036 kb on - strand, within AO353_19900at 4375.036 kb on - strand, within AO353_19900at 4375.036 kb on - strand, within AO353_19900at 4375.162 kb on + strandat 4375.162 kb on + strandat 4375.163 kb on - strandat 4375.163 kb on - strandat 4375.163 kb on - strandat 4375.163 kb on - strandat 4375.163 kb on - strandat 4375.175 kb on + strandat 4375.244 kb on + strandat 4375.244 kb on + strandat 4375.244 kb on + strandat 4375.395 kb on + strand, within AO353_19905at 4375.395 kb on + strand, within AO353_19905at 4375.395 kb on + strand, within AO353_19905at 4375.395 kb on + strand, within AO353_19905at 4375.396 kb on - strand, within AO353_19905at 4375.396 kb on - strand, within AO353_19905at 4375.587 kb on + strand, within AO353_19905at 4375.587 kb on + strand, within AO353_19905at 4375.587 kb on + strand, within AO353_19905at 4375.587 kb on + strand, within AO353_19905at 4375.588 kb on - strand, within AO353_19905at 4375.597 kb on + strand, within AO353_19905at 4375.597 kb on + strand, within AO353_19905at 4375.598 kb on - strand, within AO353_19905at 4375.598 kb on - strand, within AO353_19905at 4375.622 kb on + strand, within AO353_19905at 4375.623 kb on - strand, within AO353_19905at 4375.623 kb on - strand, within AO353_19905at 4375.623 kb on - strand, within AO353_19905at 4375.833 kb on + strand, within AO353_19905at 4375.833 kb on + strand, within AO353_19905at 4375.833 kb on + strand, within AO353_19905at 4375.834 kb on - strand, within AO353_19905at 4375.834 kb on - strand, within AO353_19905at 4375.834 kb on - strand, within AO353_19905at 4375.834 kb on - strand, within AO353_19905at 4375.909 kb on + strand, within AO353_19905at 4375.967 kb on + strandat 4375.967 kb on + strandat 4375.967 kb on + strandat 4375.968 kb on - strandat 4376.069 kb on + strandat 4376.069 kb on + strandat 4376.070 kb on - strandat 4376.070 kb on - strandat 4376.070 kb on - strandat 4376.070 kb on - strandat 4376.093 kb on - strandat 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.152 kb on + strand, within AO353_19910at 4376.153 kb on - strand, within AO353_19910at 4376.153 kb on - strand, within AO353_19910at 4376.153 kb on - strand, within AO353_19910at 4376.153 kb on - strand, within AO353_19910at 4376.153 kb on - strand, within AO353_19910at 4376.153 kb on - strand, within AO353_19910at 4376.153 kb on - strand, within AO353_19910at 4376.167 kb on + strand, within AO353_19910at 4376.168 kb on - strand, within AO353_19910

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,373,500 + AO353_19895 0.19 +1.2
4,373,500 + AO353_19895 0.19 -1.0
4,373,501 - AO353_19895 0.19 -1.8
4,373,501 - AO353_19895 0.19 -1.4
4,373,501 - AO353_19895 0.19 +0.5
4,373,514 + AO353_19895 0.21 +2.0
4,373,515 - AO353_19895 0.21 -1.0
4,373,594 + AO353_19895 0.33 -1.4
4,373,669 + AO353_19895 0.45 +0.4
4,373,669 + AO353_19895 0.45 +0.0
4,373,713 + AO353_19895 0.52 -0.3
4,373,714 - AO353_19895 0.52 -1.2
4,373,714 - AO353_19895 0.52 -1.9
4,373,714 - AO353_19895 0.52 -0.0
4,373,714 - AO353_19895 0.52 -1.6
4,373,714 - AO353_19895 0.52 -0.2
4,373,714 - +0.2
4,373,714 - AO353_19895 0.52 -0.1
4,373,714 - AO353_19895 0.52 +1.6
4,373,735 - AO353_19895 0.55 -1.2
4,373,827 + AO353_19895 0.69 -0.6
4,373,827 + AO353_19895 0.69 -0.7
4,373,827 + AO353_19895 0.69 +0.6
4,373,828 - AO353_19895 0.70 -0.7
4,373,828 - AO353_19895 0.70 +0.4
4,373,848 + AO353_19895 0.73 -1.3
4,373,849 - AO353_19895 0.73 +1.2
4,373,897 + AO353_19895 0.80 +0.8
4,373,897 + AO353_19895 0.80 -1.8
4,373,897 + AO353_19895 0.80 -0.9
4,373,897 + AO353_19895 0.80 -1.3
4,373,897 + AO353_19895 0.80 +0.0
4,373,897 + AO353_19895 0.80 +0.8
4,373,898 - AO353_19895 0.80 -0.2
4,373,898 - AO353_19895 0.80 -0.5
4,373,898 - AO353_19895 0.80 +0.2
4,373,898 - AO353_19895 0.80 +1.2
4,373,898 - AO353_19895 0.80 +1.0
4,374,086 + -0.8
4,374,094 + -0.6
4,374,115 + +0.7
4,374,184 + +1.1
4,374,215 + +1.1
4,374,347 - +2.1
4,374,451 - AO353_19900 0.14 +0.6
4,374,451 - AO353_19900 0.14 -1.0
4,374,516 + AO353_19900 0.21 -0.4
4,374,517 - AO353_19900 0.21 -0.0
4,374,541 + AO353_19900 0.23 +0.1
4,374,542 - AO353_19900 0.24 +0.7
4,374,583 + AO353_19900 0.28 -1.2
4,374,583 + AO353_19900 0.28 -0.6
4,374,583 + AO353_19900 0.28 -1.5
4,374,583 + AO353_19900 0.28 -2.0
4,374,583 + AO353_19900 0.28 -1.9
4,374,584 - AO353_19900 0.28 -1.1
4,374,584 - AO353_19900 0.28 -0.6
4,374,584 - AO353_19900 0.28 -0.9
4,374,584 - AO353_19900 0.28 +1.2
4,374,633 + AO353_19900 0.34 +1.1
4,374,633 + AO353_19900 0.34 +0.9
4,374,633 + AO353_19900 0.34 +0.4
4,374,633 + AO353_19900 0.34 -2.9
4,374,634 - AO353_19900 0.34 -0.4
4,374,634 - AO353_19900 0.34 +0.2
4,374,637 + AO353_19900 0.34 +0.4
4,374,637 + AO353_19900 0.34 -0.3
4,374,637 + AO353_19900 0.34 -0.8
4,374,638 - AO353_19900 0.34 -0.2
4,374,638 - AO353_19900 0.34 -1.4
4,374,638 - AO353_19900 0.34 -0.6
4,374,638 - AO353_19900 0.34 -0.5
4,374,673 + AO353_19900 0.38 +0.3
4,374,673 + AO353_19900 0.38 -0.9
4,374,673 + AO353_19900 0.38 +0.5
4,374,673 + AO353_19900 0.38 +1.5
4,374,673 + AO353_19900 0.38 +0.4
4,374,673 + AO353_19900 0.38 +2.1
4,374,673 + AO353_19900 0.38 +1.7
4,374,673 + AO353_19900 0.38 -0.1
4,374,673 + AO353_19900 0.38 +0.4
4,374,674 - AO353_19900 0.38 +1.6
4,374,674 - +1.8
4,374,674 - AO353_19900 0.38 -0.8
4,374,674 - AO353_19900 0.38 +0.1
4,374,674 - AO353_19900 0.38 +0.5
4,374,674 - AO353_19900 0.38 +1.6
4,374,674 - AO353_19900 0.38 -0.5
4,374,674 - AO353_19900 0.38 -0.9
4,374,674 - AO353_19900 0.38 +1.3
4,374,674 - AO353_19900 0.38 +0.2
4,374,674 - AO353_19900 0.38 +1.1
4,374,682 + AO353_19900 0.39 -0.8
4,374,682 + AO353_19900 0.39 -0.8
4,374,682 + AO353_19900 0.39 -1.1
4,374,682 + AO353_19900 0.39 +2.4
4,374,683 - AO353_19900 0.39 -0.9
4,374,683 - AO353_19900 0.39 -3.2
4,374,705 + AO353_19900 0.41 -1.3
4,374,705 + AO353_19900 0.41 +0.4
4,374,705 + AO353_19900 0.41 -0.0
4,374,705 + AO353_19900 0.41 +0.5
4,374,706 - AO353_19900 0.42 -0.5
4,374,706 - AO353_19900 0.42 -0.7
4,374,706 - AO353_19900 0.42 +0.2
4,374,706 - AO353_19900 0.42 -0.4
4,374,727 + AO353_19900 0.44 -0.5
4,374,727 + AO353_19900 0.44 -1.0
4,374,728 - AO353_19900 0.44 +0.4
4,374,793 + AO353_19900 0.51 -0.9
4,374,794 - AO353_19900 0.51 -0.9
4,374,898 + AO353_19900 0.63 +0.4
4,374,898 + AO353_19900 0.63 -0.8
4,374,898 + AO353_19900 0.63 +1.7
4,374,957 + AO353_19900 0.69 +0.4
4,374,957 + AO353_19900 0.69 -1.4
4,374,957 + AO353_19900 0.69 +0.9
4,374,958 - AO353_19900 0.69 -0.1
4,374,958 - AO353_19900 0.69 -0.7
4,374,958 - AO353_19900 0.69 -0.8
4,374,958 - AO353_19900 0.69 -0.5
4,375,019 + AO353_19900 0.76 -0.6
4,375,036 - AO353_19900 0.78 +0.2
4,375,036 - AO353_19900 0.78 -0.2
4,375,036 - AO353_19900 0.78 -1.7
4,375,036 - AO353_19900 0.78 -1.0
4,375,036 - AO353_19900 0.78 -0.0
4,375,162 + +0.6
4,375,162 + -1.7
4,375,163 - +1.5
4,375,163 - -0.1
4,375,163 - +0.7
4,375,163 - -0.7
4,375,163 - -1.2
4,375,175 + -0.4
4,375,244 + -0.4
4,375,244 + -1.3
4,375,244 + -1.1
4,375,395 + AO353_19905 0.11 -0.3
4,375,395 + AO353_19905 0.11 -0.4
4,375,395 + AO353_19905 0.11 -0.4
4,375,395 + AO353_19905 0.11 +0.6
4,375,396 - AO353_19905 0.12 -1.7
4,375,396 - AO353_19905 0.12 -0.9
4,375,587 + AO353_19905 0.38 -0.2
4,375,587 + AO353_19905 0.38 +0.7
4,375,587 + AO353_19905 0.38 -0.3
4,375,587 + AO353_19905 0.38 -1.9
4,375,588 - AO353_19905 0.38 +1.5
4,375,597 + AO353_19905 0.39 -0.5
4,375,597 + AO353_19905 0.39 +0.5
4,375,598 - AO353_19905 0.40 -2.0
4,375,598 - AO353_19905 0.40 +0.3
4,375,622 + AO353_19905 0.43 -0.5
4,375,623 - AO353_19905 0.43 -0.0
4,375,623 - AO353_19905 0.43 +0.1
4,375,623 - AO353_19905 0.43 +1.0
4,375,833 + AO353_19905 0.72 +0.8
4,375,833 + AO353_19905 0.72 -0.5
4,375,833 + AO353_19905 0.72 +1.0
4,375,834 - AO353_19905 0.72 -2.0
4,375,834 - AO353_19905 0.72 -0.9
4,375,834 - AO353_19905 0.72 +1.5
4,375,834 - AO353_19905 0.72 -0.2
4,375,909 + AO353_19905 0.83 -0.8
4,375,967 + -0.5
4,375,967 + +0.0
4,375,967 + +1.2
4,375,968 - -0.6
4,376,069 + +0.3
4,376,069 + -2.4
4,376,070 - -0.3
4,376,070 - -0.6
4,376,070 - +0.2
4,376,070 - -1.8
4,376,093 - +0.5
4,376,152 + AO353_19910 0.14 -0.6
4,376,152 + AO353_19910 0.14 +1.2
4,376,152 + AO353_19910 0.14 -1.1
4,376,152 + AO353_19910 0.14 -2.7
4,376,152 + AO353_19910 0.14 -0.1
4,376,152 + AO353_19910 0.14 +0.3
4,376,152 + AO353_19910 0.14 -1.8
4,376,152 + AO353_19910 0.14 +1.0
4,376,152 + AO353_19910 0.14 +0.2
4,376,152 + AO353_19910 0.14 +2.1
4,376,152 + AO353_19910 0.14 -0.6
4,376,152 + AO353_19910 0.14 +0.9
4,376,152 + AO353_19910 0.14 -0.1
4,376,152 + AO353_19910 0.14 -0.2
4,376,152 + AO353_19910 0.14 +1.5
4,376,152 + AO353_19910 0.14 +0.1
4,376,153 - AO353_19910 0.14 -0.0
4,376,153 - AO353_19910 0.14 +0.5
4,376,153 - AO353_19910 0.14 +1.4
4,376,153 - AO353_19910 0.14 -1.5
4,376,153 - AO353_19910 0.14 -0.4
4,376,153 - AO353_19910 0.14 +2.0
4,376,153 - AO353_19910 0.14 -1.7
4,376,167 + AO353_19910 0.16 -1.6
4,376,168 - AO353_19910 0.16 -1.0

Or see this region's nucleotide sequence