Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_13725 and AO353_13730 overlap by 4 nucleotides AO353_13730 and AO353_13735 are separated by 226 nucleotides
AO353_13725: AO353_13725 - type VI secretion protein, at 3,050,354 to 3,051,736
_13725
AO353_13730: AO353_13730 - hypothetical protein, at 3,051,733 to 3,052,518
_13730
AO353_13735: AO353_13735 - MATE family efflux transporter, at 3,052,745 to 3,054,085
_13735
Position (kb)
3051
3052
3053 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3050.733 kb on + strand, within AO353_13725 at 3050.733 kb on + strand, within AO353_13725 at 3050.733 kb on + strand, within AO353_13725 at 3050.733 kb on + strand, within AO353_13725 at 3050.733 kb on + strand, within AO353_13725 at 3050.733 kb on + strand, within AO353_13725 at 3050.733 kb on + strand, within AO353_13725 at 3050.799 kb on - strand, within AO353_13725 at 3050.885 kb on + strand, within AO353_13725 at 3050.886 kb on - strand, within AO353_13725 at 3050.886 kb on - strand, within AO353_13725 at 3051.167 kb on + strand, within AO353_13725 at 3051.168 kb on - strand, within AO353_13725 at 3051.332 kb on + strand, within AO353_13725 at 3051.332 kb on + strand, within AO353_13725 at 3051.480 kb on + strand, within AO353_13725 at 3051.480 kb on + strand, within AO353_13725 at 3051.480 kb on + strand, within AO353_13725 at 3051.481 kb on - strand, within AO353_13725 at 3051.773 kb on + strand at 3051.773 kb on + strand at 3051.773 kb on + strand at 3051.774 kb on - strand at 3051.774 kb on - strand at 3051.774 kb on - strand at 3051.774 kb on - strand at 3051.824 kb on + strand, within AO353_13730 at 3051.824 kb on + strand, within AO353_13730 at 3051.824 kb on + strand, within AO353_13730 at 3051.824 kb on + strand, within AO353_13730 at 3051.825 kb on - strand, within AO353_13730 at 3051.825 kb on - strand, within AO353_13730 at 3051.832 kb on + strand, within AO353_13730 at 3051.832 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.008 kb on + strand, within AO353_13730 at 3052.009 kb on - strand, within AO353_13730 at 3052.009 kb on - strand, within AO353_13730 at 3052.009 kb on - strand, within AO353_13730 at 3052.009 kb on - strand, within AO353_13730 at 3052.036 kb on + strand, within AO353_13730 at 3052.036 kb on + strand, within AO353_13730 at 3052.036 kb on + strand, within AO353_13730 at 3052.036 kb on + strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.037 kb on - strand, within AO353_13730 at 3052.054 kb on + strand, within AO353_13730 at 3052.054 kb on + strand, within AO353_13730 at 3052.054 kb on + strand, within AO353_13730 at 3052.055 kb on - strand, within AO353_13730 at 3052.055 kb on - strand, within AO353_13730 at 3052.055 kb on - strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.057 kb on + strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.058 kb on - strand, within AO353_13730 at 3052.078 kb on + strand, within AO353_13730 at 3052.135 kb on - strand, within AO353_13730 at 3052.141 kb on + strand, within AO353_13730 at 3052.141 kb on + strand, within AO353_13730 at 3052.142 kb on - strand, within AO353_13730 at 3052.142 kb on - strand, within AO353_13730 at 3052.142 kb on - strand, within AO353_13730 at 3052.412 kb on + strand, within AO353_13730 at 3052.413 kb on - strand, within AO353_13730 at 3052.507 kb on + strand at 3052.508 kb on - strand at 3052.565 kb on + strand at 3052.566 kb on - strand at 3052.566 kb on - strand at 3052.566 kb on - strand at 3052.626 kb on + strand at 3052.626 kb on + strand at 3052.637 kb on + strand at 3052.720 kb on + strand at 3052.720 kb on + strand at 3052.841 kb on + strand at 3052.842 kb on - strand at 3052.842 kb on - strand at 3052.889 kb on + strand, within AO353_13735 at 3052.889 kb on + strand, within AO353_13735 at 3052.889 kb on + strand, within AO353_13735 at 3052.889 kb on + strand, within AO353_13735 at 3052.890 kb on - strand, within AO353_13735 at 3052.890 kb on - strand, within AO353_13735 at 3052.890 kb on - strand, within AO353_13735 at 3052.890 kb on - strand, within AO353_13735 at 3052.890 kb on - strand, within AO353_13735 at 3052.965 kb on + strand, within AO353_13735 at 3052.965 kb on + strand, within AO353_13735 at 3052.965 kb on + strand, within AO353_13735 at 3052.965 kb on + strand, within AO353_13735 at 3052.965 kb on + strand, within AO353_13735 at 3052.965 kb on + strand, within AO353_13735 at 3052.965 kb on + strand, within AO353_13735 at 3052.965 kb on + strand, within AO353_13735 at 3052.965 kb on + strand, within AO353_13735 at 3052.966 kb on - strand, within AO353_13735 at 3053.001 kb on + strand, within AO353_13735 at 3053.001 kb on + strand, within AO353_13735 at 3053.010 kb on + strand, within AO353_13735 at 3053.010 kb on + strand, within AO353_13735 at 3053.010 kb on + strand, within AO353_13735 at 3053.011 kb on - strand, within AO353_13735 at 3053.057 kb on + strand, within AO353_13735 at 3053.057 kb on + strand, within AO353_13735 at 3053.058 kb on - strand, within AO353_13735 at 3053.252 kb on + strand, within AO353_13735 at 3053.252 kb on + strand, within AO353_13735 at 3053.253 kb on - strand, within AO353_13735 at 3053.253 kb on - strand, within AO353_13735 at 3053.253 kb on - strand, within AO353_13735 at 3053.411 kb on - strand, within AO353_13735 at 3053.438 kb on - strand, within AO353_13735
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 3,050,733 + AO353_13725 0.27 -0.9 3,050,733 + AO353_13725 0.27 +0.4 3,050,733 + AO353_13725 0.27 +1.7 3,050,733 + AO353_13725 0.27 -1.1 3,050,733 + AO353_13725 0.27 -0.7 3,050,733 + AO353_13725 0.27 -1.6 3,050,733 + AO353_13725 0.27 -2.0 3,050,799 - AO353_13725 0.32 -0.2 3,050,885 + AO353_13725 0.38 -1.3 3,050,886 - AO353_13725 0.38 +0.1 3,050,886 - AO353_13725 0.38 -1.0 3,051,167 + AO353_13725 0.59 -0.7 3,051,168 - AO353_13725 0.59 -0.6 3,051,332 + AO353_13725 0.71 -0.0 3,051,332 + AO353_13725 0.71 +0.1 3,051,480 + AO353_13725 0.81 -0.2 3,051,480 + AO353_13725 0.81 -0.3 3,051,480 + AO353_13725 0.81 -1.0 3,051,481 - AO353_13725 0.81 -1.9 3,051,773 + -0.7 3,051,773 + +0.7 3,051,773 + -0.8 3,051,774 - -0.0 3,051,774 - +0.7 3,051,774 - +0.1 3,051,774 - +1.0 3,051,824 + AO353_13730 0.12 +0.2 3,051,824 + AO353_13730 0.12 +1.6 3,051,824 + AO353_13730 0.12 -1.2 3,051,824 + AO353_13730 0.12 +1.5 3,051,825 - AO353_13730 0.12 -0.5 3,051,825 - AO353_13730 0.12 -0.6 3,051,832 + AO353_13730 0.13 -0.4 3,051,832 + AO353_13730 0.13 -0.4 3,052,008 + AO353_13730 0.35 +0.3 3,052,008 + AO353_13730 0.35 -0.3 3,052,008 + AO353_13730 0.35 -0.1 3,052,008 + AO353_13730 0.35 -0.9 3,052,008 + AO353_13730 0.35 +0.2 3,052,008 + AO353_13730 0.35 +1.2 3,052,008 + AO353_13730 0.35 +0.9 3,052,008 + AO353_13730 0.35 +0.0 3,052,008 + AO353_13730 0.35 -0.2 3,052,008 + AO353_13730 0.35 -0.7 3,052,008 + AO353_13730 0.35 +1.1 3,052,008 + AO353_13730 0.35 +0.4 3,052,008 + AO353_13730 0.35 -0.4 3,052,008 + AO353_13730 0.35 -1.3 3,052,009 - AO353_13730 0.35 -0.3 3,052,009 - AO353_13730 0.35 -0.3 3,052,009 - AO353_13730 0.35 -0.3 3,052,009 - AO353_13730 0.35 -0.4 3,052,036 + AO353_13730 0.39 +0.5 3,052,036 + AO353_13730 0.39 -0.6 3,052,036 + AO353_13730 0.39 -0.6 3,052,036 + AO353_13730 0.39 -0.6 3,052,037 - AO353_13730 0.39 +0.5 3,052,037 - AO353_13730 0.39 +1.7 3,052,037 - AO353_13730 0.39 -0.8 3,052,037 - AO353_13730 0.39 -2.1 3,052,037 - AO353_13730 0.39 -1.2 3,052,037 - AO353_13730 0.39 -0.2 3,052,037 - AO353_13730 0.39 +0.6 3,052,037 - AO353_13730 0.39 -0.5 3,052,037 - AO353_13730 0.39 +0.4 3,052,037 - AO353_13730 0.39 +1.2 3,052,037 - AO353_13730 0.39 -0.0 3,052,037 - AO353_13730 0.39 +0.8 3,052,037 - AO353_13730 0.39 -0.5 3,052,054 + AO353_13730 0.41 +0.0 3,052,054 + AO353_13730 0.41 -0.4 3,052,054 + AO353_13730 0.41 +0.7 3,052,055 - AO353_13730 0.41 -1.7 3,052,055 - AO353_13730 0.41 -0.4 3,052,055 - AO353_13730 0.41 +0.1 3,052,057 + AO353_13730 0.41 -0.5 3,052,057 + AO353_13730 0.41 -2.1 3,052,057 + AO353_13730 0.41 -0.3 3,052,057 + AO353_13730 0.41 -0.7 3,052,057 + AO353_13730 0.41 -1.2 3,052,057 + AO353_13730 0.41 -0.0 3,052,057 + AO353_13730 0.41 +0.6 3,052,057 + AO353_13730 0.41 -1.1 3,052,057 + AO353_13730 0.41 -0.4 3,052,057 + AO353_13730 0.41 +0.4 3,052,057 + AO353_13730 0.41 -0.9 3,052,057 + AO353_13730 0.41 +2.2 3,052,057 + AO353_13730 0.41 -0.2 3,052,058 - AO353_13730 0.41 -1.3 3,052,058 - AO353_13730 0.41 +2.1 3,052,058 - AO353_13730 0.41 +1.0 3,052,058 - AO353_13730 0.41 -0.7 3,052,058 - AO353_13730 0.41 -0.7 3,052,058 - AO353_13730 0.41 +0.9 3,052,058 - AO353_13730 0.41 +0.2 3,052,058 - AO353_13730 0.41 +0.5 3,052,058 - AO353_13730 0.41 +0.3 3,052,058 - AO353_13730 0.41 -1.0 3,052,058 - AO353_13730 0.41 -0.3 3,052,058 - AO353_13730 0.41 -1.4 3,052,058 - AO353_13730 0.41 -1.7 3,052,078 + AO353_13730 0.44 -0.0 3,052,135 - AO353_13730 0.51 -0.5 3,052,141 + AO353_13730 0.52 -1.2 3,052,141 + AO353_13730 0.52 +0.8 3,052,142 - AO353_13730 0.52 -0.3 3,052,142 - AO353_13730 0.52 -2.2 3,052,142 - AO353_13730 0.52 -0.1 3,052,412 + AO353_13730 0.86 -0.5 3,052,413 - AO353_13730 0.87 -0.8 3,052,507 + -0.6 3,052,508 - +1.3 3,052,565 + -0.8 3,052,566 - -1.0 3,052,566 - -2.6 3,052,566 - +0.1 3,052,626 + -0.3 3,052,626 + -0.0 3,052,637 + -0.2 3,052,720 + -0.7 3,052,720 + -0.5 3,052,841 + -1.1 3,052,842 - -2.3 3,052,842 - +0.9 3,052,889 + AO353_13735 0.11 -0.5 3,052,889 + AO353_13735 0.11 -0.4 3,052,889 + AO353_13735 0.11 +0.6 3,052,889 + AO353_13735 0.11 +0.3 3,052,890 - AO353_13735 0.11 -0.9 3,052,890 - AO353_13735 0.11 -0.6 3,052,890 - AO353_13735 0.11 +1.0 3,052,890 - AO353_13735 0.11 -0.7 3,052,890 - AO353_13735 0.11 +0.5 3,052,965 + AO353_13735 0.16 -0.4 3,052,965 + AO353_13735 0.16 +0.1 3,052,965 + AO353_13735 0.16 +0.5 3,052,965 + AO353_13735 0.16 +0.1 3,052,965 + AO353_13735 0.16 +0.5 3,052,965 + AO353_13735 0.16 -1.8 3,052,965 + AO353_13735 0.16 -0.5 3,052,965 + AO353_13735 0.16 +1.0 3,052,965 + AO353_13735 0.16 +0.7 3,052,966 - AO353_13735 0.16 -1.3 3,053,001 + AO353_13735 0.19 +2.1 3,053,001 + AO353_13735 0.19 -0.5 3,053,010 + AO353_13735 0.20 -0.5 3,053,010 + AO353_13735 0.20 -1.2 3,053,010 + AO353_13735 0.20 -0.6 3,053,011 - AO353_13735 0.20 -0.2 3,053,057 + AO353_13735 0.23 +0.6 3,053,057 + AO353_13735 0.23 -0.7 3,053,058 - AO353_13735 0.23 +0.8 3,053,252 + AO353_13735 0.38 +1.8 3,053,252 + AO353_13735 0.38 -0.3 3,053,253 - AO353_13735 0.38 +0.8 3,053,253 - AO353_13735 0.38 -1.0 3,053,253 - AO353_13735 0.38 +0.5 3,053,411 - AO353_13735 0.50 -0.4 3,053,438 - AO353_13735 0.52 +0.1
Or see this region's nucleotide sequence