Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23085

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23080 and ABZR87_RS23085 are separated by 81 nucleotidesABZR87_RS23085 and ABZR87_RS23090 are separated by 38 nucleotides ABZR87_RS23080: ABZR87_RS23080 - feruloyl-CoA synthase, at 1,537,226 to 1,539,130 _RS23080 ABZR87_RS23085: ABZR87_RS23085 - aldehyde dehydrogenase, at 1,539,212 to 1,540,675 _RS23085 ABZR87_RS23090: ABZR87_RS23090 - p-hydroxycinnamoyl CoA hydratase/lyase, at 1,540,714 to 1,541,547 _RS23090 Position (kb) 1539 1540 1541Strain fitness (log2 ratio) -3 -2 -1 0 1at 1538.226 kb on + strand, within ABZR87_RS23080at 1538.226 kb on + strand, within ABZR87_RS23080at 1538.226 kb on + strand, within ABZR87_RS23080at 1538.227 kb on - strand, within ABZR87_RS23080at 1538.443 kb on + strand, within ABZR87_RS23080at 1538.443 kb on + strand, within ABZR87_RS23080at 1538.535 kb on - strand, within ABZR87_RS23080at 1538.616 kb on + strand, within ABZR87_RS23080at 1538.617 kb on - strand, within ABZR87_RS23080at 1538.686 kb on - strand, within ABZR87_RS23080at 1538.854 kb on - strand, within ABZR87_RS23080at 1539.058 kb on - strandat 1539.058 kb on - strandat 1539.058 kb on - strandat 1539.142 kb on + strandat 1539.175 kb on + strandat 1539.175 kb on + strandat 1539.176 kb on - strandat 1539.235 kb on + strandat 1539.236 kb on - strandat 1539.265 kb on + strandat 1539.304 kb on - strandat 1539.389 kb on - strand, within ABZR87_RS23085at 1539.450 kb on + strand, within ABZR87_RS23085at 1539.450 kb on + strand, within ABZR87_RS23085at 1539.451 kb on - strand, within ABZR87_RS23085at 1539.451 kb on - strand, within ABZR87_RS23085at 1539.451 kb on - strand, within ABZR87_RS23085at 1539.537 kb on + strand, within ABZR87_RS23085at 1539.538 kb on - strand, within ABZR87_RS23085at 1539.538 kb on - strand, within ABZR87_RS23085at 1539.538 kb on - strand, within ABZR87_RS23085at 1539.538 kb on - strand, within ABZR87_RS23085at 1539.598 kb on + strand, within ABZR87_RS23085at 1539.598 kb on + strand, within ABZR87_RS23085at 1539.599 kb on - strand, within ABZR87_RS23085at 1539.674 kb on + strand, within ABZR87_RS23085at 1539.674 kb on + strand, within ABZR87_RS23085at 1539.674 kb on + strand, within ABZR87_RS23085at 1539.674 kb on + strand, within ABZR87_RS23085at 1539.674 kb on + strand, within ABZR87_RS23085at 1539.674 kb on + strand, within ABZR87_RS23085at 1539.674 kb on + strand, within ABZR87_RS23085at 1540.728 kb on - strandat 1540.728 kb on - strandat 1540.728 kb on - strandat 1540.832 kb on + strand, within ABZR87_RS23090at 1540.838 kb on + strand, within ABZR87_RS23090at 1540.839 kb on - strand, within ABZR87_RS23090at 1540.839 kb on - strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.039 kb on + strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.040 kb on - strand, within ABZR87_RS23090at 1541.042 kb on + strand, within ABZR87_RS23090at 1541.042 kb on + strand, within ABZR87_RS23090at 1541.042 kb on + strand, within ABZR87_RS23090at 1541.042 kb on + strand, within ABZR87_RS23090at 1541.043 kb on - strand, within ABZR87_RS23090at 1541.234 kb on + strand, within ABZR87_RS23090at 1541.234 kb on + strand, within ABZR87_RS23090at 1541.234 kb on + strand, within ABZR87_RS23090at 1541.235 kb on - strand, within ABZR87_RS23090at 1541.235 kb on - strand, within ABZR87_RS23090at 1541.235 kb on - strand, within ABZR87_RS23090at 1541.324 kb on + strand, within ABZR87_RS23090at 1541.324 kb on + strand, within ABZR87_RS23090at 1541.324 kb on + strand, within ABZR87_RS23090at 1541.324 kb on + strand, within ABZR87_RS23090at 1541.325 kb on - strand, within ABZR87_RS23090at 1541.325 kb on - strand, within ABZR87_RS23090at 1541.325 kb on - strand, within ABZR87_RS23090at 1541.325 kb on - strand, within ABZR87_RS23090at 1541.537 kb on + strandat 1541.538 kb on - strandat 1541.538 kb on - strandat 1541.656 kb on + strandat 1541.656 kb on + strandat 1541.657 kb on - strandat 1541.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,538,226 + ABZR87_RS23080 0.52 -0.2
1,538,226 + ABZR87_RS23080 0.52 +0.7
1,538,226 + ABZR87_RS23080 0.52 +0.3
1,538,227 - ABZR87_RS23080 0.53 -1.2
1,538,443 + ABZR87_RS23080 0.64 +0.2
1,538,443 + ABZR87_RS23080 0.64 -0.1
1,538,535 - ABZR87_RS23080 0.69 +0.8
1,538,616 + ABZR87_RS23080 0.73 +0.4
1,538,617 - ABZR87_RS23080 0.73 +0.2
1,538,686 - ABZR87_RS23080 0.77 +0.3
1,538,854 - ABZR87_RS23080 0.85 -0.7
1,539,058 - -3.2
1,539,058 - -0.6
1,539,058 - -0.3
1,539,142 + +0.3
1,539,175 + +0.2
1,539,175 + +0.1
1,539,176 - +0.2
1,539,235 + -0.7
1,539,236 - -0.2
1,539,265 + -0.3
1,539,304 - +1.3
1,539,389 - ABZR87_RS23085 0.12 +0.6
1,539,450 + ABZR87_RS23085 0.16 -0.8
1,539,450 + ABZR87_RS23085 0.16 +0.7
1,539,451 - ABZR87_RS23085 0.16 +0.4
1,539,451 - ABZR87_RS23085 0.16 +1.5
1,539,451 - ABZR87_RS23085 0.16 +0.1
1,539,537 + ABZR87_RS23085 0.22 -0.9
1,539,538 - ABZR87_RS23085 0.22 +0.5
1,539,538 - ABZR87_RS23085 0.22 +1.2
1,539,538 - ABZR87_RS23085 0.22 +1.2
1,539,538 - ABZR87_RS23085 0.22 +0.1
1,539,598 + ABZR87_RS23085 0.26 -0.1
1,539,598 + ABZR87_RS23085 0.26 +1.0
1,539,599 - ABZR87_RS23085 0.26 +0.1
1,539,674 + ABZR87_RS23085 0.32 -0.6
1,539,674 + ABZR87_RS23085 0.32 -0.7
1,539,674 + ABZR87_RS23085 0.32 +1.0
1,539,674 + ABZR87_RS23085 0.32 -1.1
1,539,674 + ABZR87_RS23085 0.32 +1.2
1,539,674 + ABZR87_RS23085 0.32 +1.5
1,539,674 + ABZR87_RS23085 0.32 +0.2
1,540,728 - -1.1
1,540,728 - +1.5
1,540,728 - +0.3
1,540,832 + ABZR87_RS23090 0.14 -0.8
1,540,838 + ABZR87_RS23090 0.15 -0.4
1,540,839 - ABZR87_RS23090 0.15 +0.0
1,540,839 - ABZR87_RS23090 0.15 +0.5
1,541,039 + ABZR87_RS23090 0.39 -0.0
1,541,039 + ABZR87_RS23090 0.39 +0.1
1,541,039 + ABZR87_RS23090 0.39 -0.1
1,541,039 + ABZR87_RS23090 0.39 +0.3
1,541,039 + ABZR87_RS23090 0.39 -1.1
1,541,039 + ABZR87_RS23090 0.39 -0.8
1,541,039 + ABZR87_RS23090 0.39 -0.1
1,541,039 + ABZR87_RS23090 0.39 -1.6
1,541,039 + ABZR87_RS23090 0.39 -0.1
1,541,039 + ABZR87_RS23090 0.39 -0.0
1,541,039 + ABZR87_RS23090 0.39 +0.8
1,541,039 + ABZR87_RS23090 0.39 -1.2
1,541,040 - ABZR87_RS23090 0.39 +0.1
1,541,040 - ABZR87_RS23090 0.39 -0.3
1,541,040 - ABZR87_RS23090 0.39 -0.7
1,541,040 - ABZR87_RS23090 0.39 +0.2
1,541,040 - ABZR87_RS23090 0.39 -0.2
1,541,040 - ABZR87_RS23090 0.39 -0.1
1,541,040 - ABZR87_RS23090 0.39 -0.5
1,541,040 - ABZR87_RS23090 0.39 +1.0
1,541,040 - ABZR87_RS23090 0.39 -0.7
1,541,040 - ABZR87_RS23090 0.39 +0.1
1,541,040 - ABZR87_RS23090 0.39 +0.3
1,541,042 + ABZR87_RS23090 0.39 -0.7
1,541,042 + ABZR87_RS23090 0.39 -2.6
1,541,042 + ABZR87_RS23090 0.39 -0.5
1,541,042 + ABZR87_RS23090 0.39 -0.5
1,541,043 - ABZR87_RS23090 0.39 +0.3
1,541,234 + ABZR87_RS23090 0.62 -0.7
1,541,234 + ABZR87_RS23090 0.62 -0.4
1,541,234 + ABZR87_RS23090 0.62 +0.5
1,541,235 - ABZR87_RS23090 0.62 -0.4
1,541,235 - ABZR87_RS23090 0.62 +1.0
1,541,235 - ABZR87_RS23090 0.62 -0.8
1,541,324 + ABZR87_RS23090 0.73 -0.3
1,541,324 + ABZR87_RS23090 0.73 +1.2
1,541,324 + ABZR87_RS23090 0.73 -0.1
1,541,324 + ABZR87_RS23090 0.73 +0.6
1,541,325 - ABZR87_RS23090 0.73 +0.3
1,541,325 - ABZR87_RS23090 0.73 -0.1
1,541,325 - ABZR87_RS23090 0.73 +0.2
1,541,325 - ABZR87_RS23090 0.73 +0.4
1,541,537 + +0.1
1,541,538 - -0.5
1,541,538 - +0.7
1,541,656 + -0.0
1,541,656 + +0.1
1,541,657 - +1.0
1,541,657 - +1.2

Or see this region's nucleotide sequence