Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22100

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22090 and ABZR87_RS22095 are separated by 10 nucleotidesABZR87_RS22095 and ABZR87_RS22100 overlap by 16 nucleotidesABZR87_RS22100 and ABZR87_RS22105 overlap by 4 nucleotidesABZR87_RS22105 and ABZR87_RS22110 overlap by 4 nucleotides ABZR87_RS22090: ABZR87_RS22090 - glycosyltransferase family 2 protein, at 1,324,796 to 1,325,905 _RS22090 ABZR87_RS22095: ABZR87_RS22095 - glucose-1-phosphate cytidylyltransferase, at 1,325,916 to 1,326,689 _RS22095 ABZR87_RS22100: ABZR87_RS22100 - CDP-glucose 4,6-dehydratase, at 1,326,674 to 1,327,780 _RS22100 ABZR87_RS22105: ABZR87_RS22105 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,327,777 to 1,328,370 _RS22105 ABZR87_RS22110: ABZR87_RS22110 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 1,328,367 to 1,329,518 _RS22110 Position (kb) 1326 1327 1328Strain fitness (log2 ratio) -1 0 1 2at 1325.795 kb on + strandat 1325.795 kb on + strandat 1325.796 kb on - strandat 1325.796 kb on - strandat 1325.810 kb on + strandat 1325.907 kb on + strandat 1326.036 kb on + strand, within ABZR87_RS22095at 1326.036 kb on + strand, within ABZR87_RS22095at 1326.037 kb on - strand, within ABZR87_RS22095at 1326.037 kb on - strand, within ABZR87_RS22095at 1326.037 kb on - strand, within ABZR87_RS22095at 1326.078 kb on + strand, within ABZR87_RS22095at 1326.079 kb on - strand, within ABZR87_RS22095at 1326.079 kb on - strand, within ABZR87_RS22095at 1326.087 kb on + strand, within ABZR87_RS22095at 1326.087 kb on + strand, within ABZR87_RS22095at 1326.088 kb on - strand, within ABZR87_RS22095at 1326.088 kb on - strand, within ABZR87_RS22095at 1326.102 kb on + strand, within ABZR87_RS22095at 1326.102 kb on + strand, within ABZR87_RS22095at 1326.102 kb on + strand, within ABZR87_RS22095at 1326.103 kb on - strand, within ABZR87_RS22095at 1326.103 kb on - strand, within ABZR87_RS22095at 1326.103 kb on - strand, within ABZR87_RS22095at 1326.114 kb on + strand, within ABZR87_RS22095at 1326.114 kb on + strand, within ABZR87_RS22095at 1326.115 kb on - strand, within ABZR87_RS22095at 1326.115 kb on - strand, within ABZR87_RS22095at 1326.115 kb on - strand, within ABZR87_RS22095at 1326.146 kb on + strand, within ABZR87_RS22095at 1326.146 kb on + strand, within ABZR87_RS22095at 1326.147 kb on - strand, within ABZR87_RS22095at 1326.261 kb on + strand, within ABZR87_RS22095at 1326.262 kb on - strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.514 kb on - strand, within ABZR87_RS22095at 1326.514 kb on - strand, within ABZR87_RS22095at 1326.514 kb on - strand, within ABZR87_RS22095at 1326.804 kb on - strand, within ABZR87_RS22100at 1326.838 kb on + strand, within ABZR87_RS22100at 1326.838 kb on + strand, within ABZR87_RS22100at 1326.980 kb on + strand, within ABZR87_RS22100at 1326.981 kb on - strand, within ABZR87_RS22100at 1326.981 kb on - strand, within ABZR87_RS22100at 1327.001 kb on + strand, within ABZR87_RS22100at 1327.001 kb on + strand, within ABZR87_RS22100at 1327.001 kb on + strand, within ABZR87_RS22100at 1327.001 kb on + strand, within ABZR87_RS22100at 1327.002 kb on - strand, within ABZR87_RS22100at 1327.098 kb on - strand, within ABZR87_RS22100at 1327.160 kb on + strand, within ABZR87_RS22100at 1327.160 kb on + strand, within ABZR87_RS22100at 1327.161 kb on - strand, within ABZR87_RS22100at 1327.161 kb on - strand, within ABZR87_RS22100at 1327.294 kb on + strand, within ABZR87_RS22100at 1327.295 kb on - strand, within ABZR87_RS22100at 1327.295 kb on - strand, within ABZR87_RS22100at 1327.397 kb on + strand, within ABZR87_RS22100at 1327.398 kb on - strand, within ABZR87_RS22100at 1327.398 kb on - strand, within ABZR87_RS22100at 1327.673 kb on + strandat 1327.838 kb on + strand, within ABZR87_RS22105at 1328.179 kb on + strand, within ABZR87_RS22105at 1328.180 kb on - strand, within ABZR87_RS22105at 1328.180 kb on - strand, within ABZR87_RS22105at 1328.180 kb on - strand, within ABZR87_RS22105at 1328.180 kb on - strand, within ABZR87_RS22105at 1328.385 kb on + strandat 1328.422 kb on - strandat 1328.422 kb on - strandat 1328.463 kb on + strandat 1328.463 kb on + strandat 1328.463 kb on + strandat 1328.463 kb on + strandat 1328.464 kb on - strandat 1328.469 kb on + strandat 1328.469 kb on + strandat 1328.470 kb on - strandat 1328.470 kb on - strandat 1328.492 kb on - strand, within ABZR87_RS22110at 1328.517 kb on + strand, within ABZR87_RS22110at 1328.517 kb on + strand, within ABZR87_RS22110at 1328.518 kb on - strand, within ABZR87_RS22110at 1328.518 kb on - strand, within ABZR87_RS22110at 1328.643 kb on + strand, within ABZR87_RS22110at 1328.643 kb on + strand, within ABZR87_RS22110at 1328.643 kb on + strand, within ABZR87_RS22110at 1328.643 kb on + strand, within ABZR87_RS22110at 1328.644 kb on - strand, within ABZR87_RS22110at 1328.644 kb on - strand, within ABZR87_RS22110at 1328.644 kb on - strand, within ABZR87_RS22110at 1328.761 kb on - strand, within ABZR87_RS22110

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,325,795 + +0.5
1,325,795 + -0.4
1,325,796 - -0.1
1,325,796 - +0.3
1,325,810 + -0.7
1,325,907 + -0.1
1,326,036 + ABZR87_RS22095 0.16 +0.3
1,326,036 + ABZR87_RS22095 0.16 +0.8
1,326,037 - ABZR87_RS22095 0.16 +0.3
1,326,037 - ABZR87_RS22095 0.16 -0.6
1,326,037 - ABZR87_RS22095 0.16 +0.1
1,326,078 + ABZR87_RS22095 0.21 +0.8
1,326,079 - ABZR87_RS22095 0.21 -0.7
1,326,079 - ABZR87_RS22095 0.21 -0.1
1,326,087 + ABZR87_RS22095 0.22 -0.1
1,326,087 + ABZR87_RS22095 0.22 -0.1
1,326,088 - ABZR87_RS22095 0.22 +0.4
1,326,088 - ABZR87_RS22095 0.22 +0.5
1,326,102 + ABZR87_RS22095 0.24 +0.2
1,326,102 + ABZR87_RS22095 0.24 +1.0
1,326,102 + ABZR87_RS22095 0.24 +0.5
1,326,103 - ABZR87_RS22095 0.24 +0.7
1,326,103 - ABZR87_RS22095 0.24 -0.6
1,326,103 - ABZR87_RS22095 0.24 +0.7
1,326,114 + ABZR87_RS22095 0.26 -0.1
1,326,114 + ABZR87_RS22095 0.26 +0.9
1,326,115 - ABZR87_RS22095 0.26 +0.2
1,326,115 - ABZR87_RS22095 0.26 +0.5
1,326,115 - ABZR87_RS22095 0.26 +1.8
1,326,146 + ABZR87_RS22095 0.30 +0.4
1,326,146 + ABZR87_RS22095 0.30 -0.1
1,326,147 - ABZR87_RS22095 0.30 -0.1
1,326,261 + ABZR87_RS22095 0.45 -0.3
1,326,262 - ABZR87_RS22095 0.45 +0.5
1,326,513 + ABZR87_RS22095 0.77 +0.5
1,326,513 + ABZR87_RS22095 0.77 +1.1
1,326,513 + ABZR87_RS22095 0.77 +0.5
1,326,513 + ABZR87_RS22095 0.77 +0.0
1,326,513 + ABZR87_RS22095 0.77 +0.9
1,326,513 + ABZR87_RS22095 0.77 +0.8
1,326,514 - ABZR87_RS22095 0.77 -0.2
1,326,514 - ABZR87_RS22095 0.77 +0.3
1,326,514 - ABZR87_RS22095 0.77 -0.1
1,326,804 - ABZR87_RS22100 0.12 +0.6
1,326,838 + ABZR87_RS22100 0.15 +0.6
1,326,838 + ABZR87_RS22100 0.15 +0.6
1,326,980 + ABZR87_RS22100 0.28 -0.4
1,326,981 - ABZR87_RS22100 0.28 -0.5
1,326,981 - ABZR87_RS22100 0.28 -1.4
1,327,001 + ABZR87_RS22100 0.30 +0.3
1,327,001 + ABZR87_RS22100 0.30 +0.9
1,327,001 + ABZR87_RS22100 0.30 +1.2
1,327,001 + ABZR87_RS22100 0.30 +0.8
1,327,002 - ABZR87_RS22100 0.30 -1.2
1,327,098 - ABZR87_RS22100 0.38 +0.8
1,327,160 + ABZR87_RS22100 0.44 -0.2
1,327,160 + ABZR87_RS22100 0.44 +1.0
1,327,161 - ABZR87_RS22100 0.44 -0.8
1,327,161 - ABZR87_RS22100 0.44 +0.1
1,327,294 + ABZR87_RS22100 0.56 -0.1
1,327,295 - ABZR87_RS22100 0.56 +0.4
1,327,295 - ABZR87_RS22100 0.56 +1.0
1,327,397 + ABZR87_RS22100 0.65 -0.3
1,327,398 - ABZR87_RS22100 0.65 -0.1
1,327,398 - ABZR87_RS22100 0.65 +1.1
1,327,673 + -0.6
1,327,838 + ABZR87_RS22105 0.10 +2.3
1,328,179 + ABZR87_RS22105 0.68 -0.4
1,328,180 - ABZR87_RS22105 0.68 +0.8
1,328,180 - ABZR87_RS22105 0.68 +1.8
1,328,180 - ABZR87_RS22105 0.68 +0.8
1,328,180 - ABZR87_RS22105 0.68 +0.1
1,328,385 + +1.9
1,328,422 - +0.6
1,328,422 - -0.8
1,328,463 + -0.2
1,328,463 + +0.3
1,328,463 + -0.3
1,328,463 + -0.2
1,328,464 - +0.2
1,328,469 + +0.2
1,328,469 + +0.7
1,328,470 - +0.3
1,328,470 - +0.3
1,328,492 - ABZR87_RS22110 0.11 -0.4
1,328,517 + ABZR87_RS22110 0.13 +0.9
1,328,517 + ABZR87_RS22110 0.13 +0.5
1,328,518 - ABZR87_RS22110 0.13 +0.5
1,328,518 - ABZR87_RS22110 0.13 -0.1
1,328,643 + ABZR87_RS22110 0.24 -0.0
1,328,643 + ABZR87_RS22110 0.24 -0.1
1,328,643 + ABZR87_RS22110 0.24 +0.2
1,328,643 + ABZR87_RS22110 0.24 -0.9
1,328,644 - ABZR87_RS22110 0.24 +1.5
1,328,644 - ABZR87_RS22110 0.24 +0.5
1,328,644 - ABZR87_RS22110 0.24 +0.3
1,328,761 - ABZR87_RS22110 0.34 +0.6

Or see this region's nucleotide sequence