Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20570 and ABZR87_RS20575 are separated by 332 nucleotides ABZR87_RS20575 and ABZR87_RS20580 are separated by 114 nucleotides ABZR87_RS20580 and ABZR87_RS20585 are separated by 265 nucleotides ABZR87_RS20585 and ABZR87_RS20590 are separated by 36 nucleotides ABZR87_RS20590 and ABZR87_RS20595 are separated by 60 nucleotides
ABZR87_RS20570: ABZR87_RS20570 - translesion DNA synthesis-associated protein ImuA, at 1,003,999 to 1,004,955
_RS20570
ABZR87_RS20575: ABZR87_RS20575 - 5S ribosomal RNA, at 1,005,288 to 1,005,400
_RS20575
ABZR87_RS20580: ABZR87_RS20580 - 23S ribosomal RNA, at 1,005,515 to 1,008,393
_RS20580
ABZR87_RS20585: ABZR87_RS20585 - tRNA-Ala, at 1,008,659 to 1,008,734
_RS20585
ABZR87_RS20590: ABZR87_RS20590 - tRNA-Ile, at 1,008,771 to 1,008,847
_RS20590
ABZR87_RS20595: ABZR87_RS20595 - 16S ribosomal RNA, at 1,008,908 to 1,010,447
_RS20595
Position (kb)
1005
1006
1007
1008
1009 Strain fitness (log2 ratio)
-1
0
1 at 1004.643 kb on + strand, within ABZR87_RS20570 at 1004.643 kb on + strand, within ABZR87_RS20570 at 1004.644 kb on - strand, within ABZR87_RS20570 at 1004.644 kb on - strand, within ABZR87_RS20570 at 1004.737 kb on + strand, within ABZR87_RS20570 at 1004.738 kb on - strand, within ABZR87_RS20570 at 1004.738 kb on - strand, within ABZR87_RS20570 at 1004.738 kb on - strand, within ABZR87_RS20570 at 1004.738 kb on - strand, within ABZR87_RS20570 at 1004.760 kb on - strand, within ABZR87_RS20570 at 1004.760 kb on - strand, within ABZR87_RS20570 at 1004.839 kb on + strand, within ABZR87_RS20570 at 1004.839 kb on + strand, within ABZR87_RS20570 at 1004.840 kb on - strand, within ABZR87_RS20570 at 1004.840 kb on - strand, within ABZR87_RS20570 at 1004.840 kb on - strand, within ABZR87_RS20570 at 1004.906 kb on + strand at 1004.999 kb on - strand at 1005.024 kb on + strand at 1005.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,004,643 + ABZR87_RS20570 0.67 -0.3 1,004,643 + ABZR87_RS20570 0.67 +0.8 1,004,644 - ABZR87_RS20570 0.67 +0.0 1,004,644 - ABZR87_RS20570 0.67 +0.4 1,004,737 + ABZR87_RS20570 0.77 -0.6 1,004,738 - ABZR87_RS20570 0.77 -0.3 1,004,738 - ABZR87_RS20570 0.77 +1.1 1,004,738 - ABZR87_RS20570 0.77 -0.7 1,004,738 - ABZR87_RS20570 0.77 -0.3 1,004,760 - ABZR87_RS20570 0.80 -0.4 1,004,760 - ABZR87_RS20570 0.80 -0.1 1,004,839 + ABZR87_RS20570 0.88 -0.8 1,004,839 + ABZR87_RS20570 0.88 +0.0 1,004,840 - ABZR87_RS20570 0.88 -0.5 1,004,840 - ABZR87_RS20570 0.88 -0.8 1,004,840 - ABZR87_RS20570 0.88 -1.7 1,004,906 + -0.5 1,004,999 - +0.4 1,005,024 + +1.7 1,005,153 + +0.6
Or see this region's nucleotide sequence