Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18710

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18705 and ABZR87_RS18710 are separated by 88 nucleotidesABZR87_RS18710 and ABZR87_RS18715 are separated by 198 nucleotidesABZR87_RS18715 and ABZR87_RS18720 are separated by 82 nucleotides ABZR87_RS18705: ABZR87_RS18705 - TraB/GumN family protein, at 548,494 to 549,522 _RS18705 ABZR87_RS18710: ABZR87_RS18710 - hypothetical protein, at 549,611 to 550,792 _RS18710 ABZR87_RS18715: ABZR87_RS18715 - DUF2946 domain-containing protein, at 550,991 to 551,392 _RS18715 ABZR87_RS18720: ABZR87_RS18720 - TonB-dependent receptor, at 551,475 to 553,793 _RS18720 Position (kb) 549 550 551Strain fitness (log2 ratio) -1 0 1 2at 548.729 kb on + strand, within ABZR87_RS18705at 548.729 kb on + strand, within ABZR87_RS18705at 548.933 kb on + strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.934 kb on - strand, within ABZR87_RS18705at 548.969 kb on + strand, within ABZR87_RS18705at 549.278 kb on + strand, within ABZR87_RS18705at 549.539 kb on + strandat 549.539 kb on + strandat 549.540 kb on - strandat 549.563 kb on + strandat 549.563 kb on + strandat 549.564 kb on - strandat 549.612 kb on + strandat 549.612 kb on + strandat 549.612 kb on + strandat 549.613 kb on - strandat 549.694 kb on - strandat 549.694 kb on - strandat 549.694 kb on - strandat 549.694 kb on - strandat 549.767 kb on - strand, within ABZR87_RS18710at 549.767 kb on - strand, within ABZR87_RS18710at 549.798 kb on + strand, within ABZR87_RS18710at 549.799 kb on - strand, within ABZR87_RS18710at 549.799 kb on - strand, within ABZR87_RS18710at 549.799 kb on - strand, within ABZR87_RS18710at 549.831 kb on + strand, within ABZR87_RS18710at 549.832 kb on - strand, within ABZR87_RS18710at 549.895 kb on - strand, within ABZR87_RS18710at 549.895 kb on - strand, within ABZR87_RS18710at 550.113 kb on + strand, within ABZR87_RS18710at 550.114 kb on - strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.451 kb on - strand, within ABZR87_RS18710at 550.451 kb on - strand, within ABZR87_RS18710at 550.451 kb on - strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.581 kb on - strand, within ABZR87_RS18710at 550.581 kb on - strand, within ABZR87_RS18710at 550.581 kb on - strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.861 kb on - strandat 550.861 kb on - strandat 550.861 kb on - strandat 550.961 kb on - strandat 550.962 kb on + strandat 550.962 kb on + strandat 550.962 kb on + strandat 550.962 kb on + strandat 550.963 kb on - strandat 550.986 kb on + strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.991 kb on - strandat 551.034 kb on + strand, within ABZR87_RS18715at 551.035 kb on - strand, within ABZR87_RS18715at 551.035 kb on - strand, within ABZR87_RS18715at 551.035 kb on - strand, within ABZR87_RS18715at 551.043 kb on + strand, within ABZR87_RS18715at 551.043 kb on + strand, within ABZR87_RS18715at 551.043 kb on + strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.045 kb on - strand, within ABZR87_RS18715at 551.213 kb on + strand, within ABZR87_RS18715at 551.213 kb on + strand, within ABZR87_RS18715at 551.213 kb on + strand, within ABZR87_RS18715at 551.214 kb on - strand, within ABZR87_RS18715at 551.214 kb on - strand, within ABZR87_RS18715at 551.288 kb on + strand, within ABZR87_RS18715at 551.288 kb on + strand, within ABZR87_RS18715at 551.288 kb on + strand, within ABZR87_RS18715at 551.289 kb on - strand, within ABZR87_RS18715at 551.289 kb on - strand, within ABZR87_RS18715at 551.324 kb on + strand, within ABZR87_RS18715at 551.325 kb on - strand, within ABZR87_RS18715at 551.407 kb on + strandat 551.407 kb on + strandat 551.407 kb on + strandat 551.407 kb on + strandat 551.407 kb on + strandat 551.408 kb on - strandat 551.673 kb on - strandat 551.673 kb on - strandat 551.673 kb on - strandat 551.752 kb on - strand, within ABZR87_RS18720at 551.752 kb on - strand, within ABZR87_RS18720at 551.752 kb on - strand, within ABZR87_RS18720

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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548,729 + ABZR87_RS18705 0.23 +0.6
548,729 + ABZR87_RS18705 0.23 +0.9
548,933 + ABZR87_RS18705 0.43 +1.9
548,934 - ABZR87_RS18705 0.43 +0.3
548,934 - ABZR87_RS18705 0.43 +0.7
548,934 - ABZR87_RS18705 0.43 -1.4
548,934 - ABZR87_RS18705 0.43 -0.1
548,969 + ABZR87_RS18705 0.46 +0.2
549,278 + ABZR87_RS18705 0.76 +0.1
549,539 + +1.6
549,539 + -0.9
549,540 - -1.1
549,563 + -1.0
549,563 + -0.4
549,564 - -0.3
549,612 + +0.3
549,612 + +0.8
549,612 + +0.9
549,613 - -0.1
549,694 - +0.6
549,694 - -1.3
549,694 - -1.2
549,694 - +1.8
549,767 - ABZR87_RS18710 0.13 +0.4
549,767 - ABZR87_RS18710 0.13 +0.0
549,798 + ABZR87_RS18710 0.16 -0.3
549,799 - ABZR87_RS18710 0.16 -0.4
549,799 - ABZR87_RS18710 0.16 -0.6
549,799 - ABZR87_RS18710 0.16 -0.8
549,831 + ABZR87_RS18710 0.19 -0.8
549,832 - ABZR87_RS18710 0.19 -0.3
549,895 - ABZR87_RS18710 0.24 -0.7
549,895 - ABZR87_RS18710 0.24 -0.7
550,113 + ABZR87_RS18710 0.42 +1.5
550,114 - ABZR87_RS18710 0.43 +1.0
550,125 + ABZR87_RS18710 0.43 -0.5
550,125 + ABZR87_RS18710 0.43 -0.1
550,125 + ABZR87_RS18710 0.43 -0.3
550,125 + ABZR87_RS18710 0.43 -0.1
550,125 + ABZR87_RS18710 0.43 -0.6
550,125 + ABZR87_RS18710 0.43 +0.7
550,125 + ABZR87_RS18710 0.43 +0.1
550,125 + ABZR87_RS18710 0.43 +0.5
550,125 + ABZR87_RS18710 0.43 -0.2
550,125 + ABZR87_RS18710 0.43 +0.1
550,125 + ABZR87_RS18710 0.43 -0.3
550,125 + ABZR87_RS18710 0.43 -0.2
550,126 - ABZR87_RS18710 0.44 +0.0
550,126 - ABZR87_RS18710 0.44 -0.2
550,126 - ABZR87_RS18710 0.44 -0.2
550,126 - ABZR87_RS18710 0.44 +1.1
550,126 - ABZR87_RS18710 0.44 +0.7
550,126 - ABZR87_RS18710 0.44 -0.7
550,378 - ABZR87_RS18710 0.65 -0.1
550,378 - ABZR87_RS18710 0.65 -0.8
550,378 - ABZR87_RS18710 0.65 +0.7
550,378 - ABZR87_RS18710 0.65 +0.6
550,378 - ABZR87_RS18710 0.65 +0.2
550,450 + ABZR87_RS18710 0.71 -0.3
550,450 + ABZR87_RS18710 0.71 +0.4
550,450 + ABZR87_RS18710 0.71 -0.4
550,450 + ABZR87_RS18710 0.71 +0.1
550,451 - ABZR87_RS18710 0.71 -0.6
550,451 - ABZR87_RS18710 0.71 +1.8
550,451 - ABZR87_RS18710 0.71 +0.5
550,580 + ABZR87_RS18710 0.82 +0.3
550,580 + ABZR87_RS18710 0.82 +0.1
550,580 + ABZR87_RS18710 0.82 -0.1
550,580 + ABZR87_RS18710 0.82 -0.0
550,580 + ABZR87_RS18710 0.82 +0.5
550,581 - ABZR87_RS18710 0.82 +0.2
550,581 - ABZR87_RS18710 0.82 +0.5
550,581 - ABZR87_RS18710 0.82 +0.4
550,590 + ABZR87_RS18710 0.83 +0.5
550,590 + ABZR87_RS18710 0.83 +0.1
550,590 + ABZR87_RS18710 0.83 +0.0
550,590 + ABZR87_RS18710 0.83 +0.3
550,590 + ABZR87_RS18710 0.83 -0.5
550,590 + ABZR87_RS18710 0.83 -0.2
550,590 + ABZR87_RS18710 0.83 +1.1
550,591 - ABZR87_RS18710 0.83 -0.7
550,591 - ABZR87_RS18710 0.83 +0.0
550,591 - ABZR87_RS18710 0.83 -0.3
550,591 - ABZR87_RS18710 0.83 -1.4
550,591 - ABZR87_RS18710 0.83 -0.1
550,591 - ABZR87_RS18710 0.83 +1.0
550,591 - ABZR87_RS18710 0.83 -0.1
550,591 - ABZR87_RS18710 0.83 +0.6
550,591 - ABZR87_RS18710 0.83 +0.3
550,591 - ABZR87_RS18710 0.83 +0.8
550,861 - -0.7
550,861 - -1.4
550,861 - +0.4
550,961 - -0.7
550,962 + -0.9
550,962 + -1.2
550,962 + -0.2
550,962 + -0.3
550,963 - +0.1
550,986 + -0.4
550,987 - +0.0
550,987 - -0.1
550,987 - +0.3
550,987 - +0.0
550,987 - -0.8
550,991 - -0.8
551,034 + ABZR87_RS18715 0.11 -0.4
551,035 - ABZR87_RS18715 0.11 -0.0
551,035 - ABZR87_RS18715 0.11 +0.6
551,035 - ABZR87_RS18715 0.11 -0.6
551,043 + ABZR87_RS18715 0.13 -0.4
551,043 + ABZR87_RS18715 0.13 -1.0
551,043 + ABZR87_RS18715 0.13 +0.1
551,044 - ABZR87_RS18715 0.13 -0.2
551,044 - ABZR87_RS18715 0.13 -1.2
551,044 - ABZR87_RS18715 0.13 +0.8
551,044 - ABZR87_RS18715 0.13 +0.2
551,045 - ABZR87_RS18715 0.13 +1.5
551,213 + ABZR87_RS18715 0.55 +0.1
551,213 + ABZR87_RS18715 0.55 -0.5
551,213 + ABZR87_RS18715 0.55 +0.3
551,214 - ABZR87_RS18715 0.55 +0.5
551,214 - ABZR87_RS18715 0.55 -0.1
551,288 + ABZR87_RS18715 0.74 +1.2
551,288 + ABZR87_RS18715 0.74 +0.6
551,288 + ABZR87_RS18715 0.74 -0.5
551,289 - ABZR87_RS18715 0.74 -0.3
551,289 - ABZR87_RS18715 0.74 -0.7
551,324 + ABZR87_RS18715 0.83 +0.4
551,325 - ABZR87_RS18715 0.83 -1.2
551,407 + -0.0
551,407 + +0.2
551,407 + -0.3
551,407 + +0.2
551,407 + +1.1
551,408 - -1.5
551,673 - -0.7
551,673 - -1.0
551,673 - +1.7
551,752 - ABZR87_RS18720 0.12 -0.1
551,752 - ABZR87_RS18720 0.12 -0.7
551,752 - ABZR87_RS18720 0.12 -0.3

Or see this region's nucleotide sequence