Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11425

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11420 and ABZR87_RS11425 are separated by 40 nucleotidesABZR87_RS11425 and ABZR87_RS11430 are separated by 126 nucleotides ABZR87_RS11420: ABZR87_RS11420 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 2,420,382 to 2,421,542 _RS11420 ABZR87_RS11425: ABZR87_RS11425 - SMR family transporter, at 2,421,583 to 2,421,954 _RS11425 ABZR87_RS11430: ABZR87_RS11430 - glycosyltransferase family 39 protein, at 2,422,081 to 2,423,751 _RS11430 Position (kb) 2421 2422Strain fitness (log2 ratio) -2 -1 0 1 2at 2420.670 kb on - strand, within ABZR87_RS11420at 2420.670 kb on - strand, within ABZR87_RS11420at 2420.676 kb on - strand, within ABZR87_RS11420at 2421.098 kb on - strand, within ABZR87_RS11420at 2421.098 kb on - strand, within ABZR87_RS11420at 2421.098 kb on - strand, within ABZR87_RS11420at 2421.386 kb on - strand, within ABZR87_RS11420at 2421.386 kb on - strand, within ABZR87_RS11420at 2421.996 kb on - strandat 2422.082 kb on + strandat 2422.082 kb on + strandat 2422.083 kb on + strandat 2422.083 kb on - strandat 2422.083 kb on - strandat 2422.083 kb on - strandat 2422.755 kb on - strand, within ABZR87_RS11430

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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2,420,670 - ABZR87_RS11420 0.25 -0.7
2,420,670 - ABZR87_RS11420 0.25 +1.2
2,420,676 - ABZR87_RS11420 0.25 -0.6
2,421,098 - ABZR87_RS11420 0.62 +1.4
2,421,098 - ABZR87_RS11420 0.62 -1.7
2,421,098 - ABZR87_RS11420 0.62 +1.2
2,421,386 - ABZR87_RS11420 0.86 -1.7
2,421,386 - ABZR87_RS11420 0.86 +2.5
2,421,996 - +0.1
2,422,082 + -0.5
2,422,082 + -0.5
2,422,083 + -0.1
2,422,083 - -0.4
2,422,083 - +0.9
2,422,083 - -0.2
2,422,755 - ABZR87_RS11430 0.40 -2.1

Or see this region's nucleotide sequence