Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04705

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04700 and ABZR87_RS04705 overlap by 4 nucleotidesABZR87_RS04705 and ABZR87_RS04710 are separated by 2 nucleotidesABZR87_RS04710 and ABZR87_RS04715 are separated by 20 nucleotides ABZR87_RS04700: ABZR87_RS04700 - FAD-binding oxidoreductase, at 980,862 to 982,181 _RS04700 ABZR87_RS04705: ABZR87_RS04705 - amino acid ABC transporter ATP-binding protein, at 982,178 to 982,939 _RS04705 ABZR87_RS04710: ABZR87_RS04710 - ectoine/hydroxyectoine ABC transporter permease subunit EhuD, at 982,942 to 983,613 _RS04710 ABZR87_RS04715: ABZR87_RS04715 - ABC transporter substrate-binding protein, at 983,634 to 984,398 _RS04715 Position (kb) 982 983Strain fitness (log2 ratio) -2 -1 0 1 2at 981.277 kb on + strand, within ABZR87_RS04700at 981.277 kb on + strand, within ABZR87_RS04700at 981.368 kb on + strand, within ABZR87_RS04700at 981.368 kb on + strand, within ABZR87_RS04700at 981.368 kb on + strand, within ABZR87_RS04700at 981.369 kb on - strand, within ABZR87_RS04700at 981.369 kb on - strand, within ABZR87_RS04700at 981.424 kb on + strand, within ABZR87_RS04700at 981.425 kb on - strand, within ABZR87_RS04700at 981.425 kb on - strand, within ABZR87_RS04700at 981.425 kb on - strand, within ABZR87_RS04700at 981.751 kb on + strand, within ABZR87_RS04700at 981.752 kb on - strand, within ABZR87_RS04700at 981.752 kb on - strand, within ABZR87_RS04700at 981.752 kb on - strand, within ABZR87_RS04700at 981.822 kb on + strand, within ABZR87_RS04700at 981.822 kb on + strand, within ABZR87_RS04700at 981.823 kb on - strand, within ABZR87_RS04700at 981.823 kb on - strand, within ABZR87_RS04700at 982.030 kb on + strand, within ABZR87_RS04700at 982.030 kb on + strand, within ABZR87_RS04700at 982.030 kb on + strand, within ABZR87_RS04700at 982.031 kb on - strand, within ABZR87_RS04700at 982.031 kb on - strand, within ABZR87_RS04700at 982.542 kb on + strand, within ABZR87_RS04705at 982.543 kb on - strand, within ABZR87_RS04705at 982.629 kb on + strand, within ABZR87_RS04705at 982.629 kb on + strand, within ABZR87_RS04705at 982.629 kb on + strand, within ABZR87_RS04705at 982.630 kb on - strand, within ABZR87_RS04705at 982.630 kb on - strand, within ABZR87_RS04705at 982.630 kb on - strand, within ABZR87_RS04705at 982.630 kb on - strand, within ABZR87_RS04705at 982.630 kb on - strand, within ABZR87_RS04705at 982.782 kb on + strand, within ABZR87_RS04705at 982.782 kb on + strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 983.021 kb on + strand, within ABZR87_RS04710at 983.021 kb on + strand, within ABZR87_RS04710at 983.022 kb on - strand, within ABZR87_RS04710at 983.022 kb on - strand, within ABZR87_RS04710at 983.042 kb on + strand, within ABZR87_RS04710at 983.042 kb on + strand, within ABZR87_RS04710at 983.042 kb on + strand, within ABZR87_RS04710at 983.043 kb on - strand, within ABZR87_RS04710at 983.162 kb on + strand, within ABZR87_RS04710at 983.163 kb on - strand, within ABZR87_RS04710at 983.303 kb on + strand, within ABZR87_RS04710at 983.312 kb on + strand, within ABZR87_RS04710at 983.312 kb on + strand, within ABZR87_RS04710at 983.313 kb on - strand, within ABZR87_RS04710at 983.313 kb on - strand, within ABZR87_RS04710at 983.313 kb on - strand, within ABZR87_RS04710at 983.313 kb on - strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.384 kb on + strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.385 kb on - strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.390 kb on + strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.391 kb on - strand, within ABZR87_RS04710at 983.455 kb on + strand, within ABZR87_RS04710at 983.456 kb on - strand, within ABZR87_RS04710at 983.456 kb on - strand, within ABZR87_RS04710at 983.456 kb on - strand, within ABZR87_RS04710at 983.456 kb on - strand, within ABZR87_RS04710at 983.774 kb on - strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.902 kb on + strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.903 kb on - strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.906 kb on + strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715at 983.907 kb on - strand, within ABZR87_RS04715

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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981,277 + ABZR87_RS04700 0.31 +0.3
981,277 + ABZR87_RS04700 0.31 +0.5
981,368 + ABZR87_RS04700 0.38 +0.0
981,368 + ABZR87_RS04700 0.38 -0.3
981,368 + ABZR87_RS04700 0.38 -0.4
981,369 - ABZR87_RS04700 0.38 -0.5
981,369 - ABZR87_RS04700 0.38 -1.5
981,424 + ABZR87_RS04700 0.43 +0.0
981,425 - ABZR87_RS04700 0.43 +0.5
981,425 - ABZR87_RS04700 0.43 -0.8
981,425 - ABZR87_RS04700 0.43 -2.0
981,751 + ABZR87_RS04700 0.67 +0.1
981,752 - ABZR87_RS04700 0.67 -0.1
981,752 - ABZR87_RS04700 0.67 -0.5
981,752 - ABZR87_RS04700 0.67 -0.8
981,822 + ABZR87_RS04700 0.73 +0.9
981,822 + ABZR87_RS04700 0.73 -0.2
981,823 - ABZR87_RS04700 0.73 -0.6
981,823 - ABZR87_RS04700 0.73 +0.4
982,030 + ABZR87_RS04700 0.88 -0.4
982,030 + ABZR87_RS04700 0.88 +0.4
982,030 + ABZR87_RS04700 0.88 +0.3
982,031 - ABZR87_RS04700 0.89 -0.1
982,031 - ABZR87_RS04700 0.89 +0.0
982,542 + ABZR87_RS04705 0.48 -0.4
982,543 - ABZR87_RS04705 0.48 +0.0
982,629 + ABZR87_RS04705 0.59 +0.1
982,629 + ABZR87_RS04705 0.59 -0.3
982,629 + ABZR87_RS04705 0.59 -0.9
982,630 - ABZR87_RS04705 0.59 +0.6
982,630 - ABZR87_RS04705 0.59 +0.5
982,630 - ABZR87_RS04705 0.59 +1.2
982,630 - ABZR87_RS04705 0.59 +0.2
982,630 - ABZR87_RS04705 0.59 +1.8
982,782 + ABZR87_RS04705 0.79 -0.8
982,782 + ABZR87_RS04705 0.79 -1.7
982,783 - ABZR87_RS04705 0.79 +0.2
982,783 - ABZR87_RS04705 0.79 -0.5
982,783 - ABZR87_RS04705 0.79 +0.5
982,783 - ABZR87_RS04705 0.79 +0.1
982,783 - ABZR87_RS04705 0.79 +0.5
982,783 - ABZR87_RS04705 0.79 -0.0
983,021 + ABZR87_RS04710 0.12 +0.1
983,021 + ABZR87_RS04710 0.12 +0.2
983,022 - ABZR87_RS04710 0.12 -0.0
983,022 - ABZR87_RS04710 0.12 +0.3
983,042 + ABZR87_RS04710 0.15 +0.2
983,042 + ABZR87_RS04710 0.15 -0.5
983,042 + ABZR87_RS04710 0.15 -1.2
983,043 - ABZR87_RS04710 0.15 +1.1
983,162 + ABZR87_RS04710 0.33 -0.6
983,163 - ABZR87_RS04710 0.33 +0.2
983,303 + ABZR87_RS04710 0.54 -0.1
983,312 + ABZR87_RS04710 0.55 -1.3
983,312 + ABZR87_RS04710 0.55 +0.1
983,313 - ABZR87_RS04710 0.55 -0.3
983,313 - ABZR87_RS04710 0.55 -0.2
983,313 - ABZR87_RS04710 0.55 -0.8
983,313 - ABZR87_RS04710 0.55 +0.7
983,384 + ABZR87_RS04710 0.66 -0.3
983,384 + ABZR87_RS04710 0.66 +0.1
983,384 + ABZR87_RS04710 0.66 +0.0
983,384 + ABZR87_RS04710 0.66 +1.5
983,384 + ABZR87_RS04710 0.66 -0.8
983,384 + ABZR87_RS04710 0.66 +0.2
983,384 + ABZR87_RS04710 0.66 +0.6
983,384 + ABZR87_RS04710 0.66 -0.5
983,385 - ABZR87_RS04710 0.66 +0.7
983,385 - ABZR87_RS04710 0.66 -0.3
983,385 - ABZR87_RS04710 0.66 -0.7
983,385 - ABZR87_RS04710 0.66 +0.8
983,385 - ABZR87_RS04710 0.66 -0.9
983,385 - ABZR87_RS04710 0.66 +0.2
983,385 - ABZR87_RS04710 0.66 -0.9
983,385 - ABZR87_RS04710 0.66 -1.5
983,390 + ABZR87_RS04710 0.67 +0.5
983,390 + ABZR87_RS04710 0.67 -0.5
983,390 + ABZR87_RS04710 0.67 +0.3
983,390 + ABZR87_RS04710 0.67 +0.1
983,390 + ABZR87_RS04710 0.67 +1.1
983,390 + ABZR87_RS04710 0.67 -0.0
983,390 + ABZR87_RS04710 0.67 +0.0
983,390 + ABZR87_RS04710 0.67 -0.4
983,390 + ABZR87_RS04710 0.67 +0.4
983,390 + ABZR87_RS04710 0.67 -0.5
983,390 + ABZR87_RS04710 0.67 +0.0
983,391 - ABZR87_RS04710 0.67 +0.5
983,391 - ABZR87_RS04710 0.67 +0.9
983,391 - ABZR87_RS04710 0.67 +0.1
983,391 - ABZR87_RS04710 0.67 +0.4
983,391 - ABZR87_RS04710 0.67 -0.0
983,391 - ABZR87_RS04710 0.67 +0.6
983,391 - ABZR87_RS04710 0.67 -0.4
983,455 + ABZR87_RS04710 0.76 +1.5
983,456 - ABZR87_RS04710 0.76 +0.1
983,456 - ABZR87_RS04710 0.76 -0.2
983,456 - ABZR87_RS04710 0.76 -0.6
983,456 - ABZR87_RS04710 0.76 -0.6
983,774 - ABZR87_RS04715 0.18 -0.1
983,902 + ABZR87_RS04715 0.35 -1.0
983,902 + ABZR87_RS04715 0.35 -0.1
983,902 + ABZR87_RS04715 0.35 +0.2
983,902 + ABZR87_RS04715 0.35 +0.8
983,902 + ABZR87_RS04715 0.35 +0.4
983,903 - ABZR87_RS04715 0.35 -0.8
983,903 - ABZR87_RS04715 0.35 +0.1
983,903 - ABZR87_RS04715 0.35 -0.4
983,903 - ABZR87_RS04715 0.35 -1.2
983,903 - ABZR87_RS04715 0.35 +0.5
983,906 + ABZR87_RS04715 0.36 +0.1
983,906 + ABZR87_RS04715 0.36 -0.6
983,906 + ABZR87_RS04715 0.36 +0.9
983,906 + ABZR87_RS04715 0.36 -0.4
983,906 + ABZR87_RS04715 0.36 +0.1
983,906 + ABZR87_RS04715 0.36 -1.5
983,907 - ABZR87_RS04715 0.36 +0.9
983,907 - ABZR87_RS04715 0.36 +0.6
983,907 - ABZR87_RS04715 0.36 -0.3
983,907 - ABZR87_RS04715 0.36 +0.1
983,907 - ABZR87_RS04715 0.36 +0.7

Or see this region's nucleotide sequence